Wall clock time and date at job start Sat Apr 11 2020 05:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35346 * 125.69160 * 2 1 4 4 N 1.36157 * 107.14167 * 179.89906 * 3 2 1 5 5 C 1.36219 * 133.92918 * 180.08542 * 4 3 2 6 6 C 1.35489 * 120.52605 * 180.34257 * 5 4 3 7 7 N 1.32689 * 122.11219 * 359.95278 * 6 5 4 8 8 C 1.32293 * 121.18982 * 0.03003 * 7 6 5 9 9 C 1.47800 * 120.59344 * 179.97438 * 8 7 6 10 10 O 1.21562 * 120.00178 * 173.98089 * 9 8 7 11 11 N 1.34775 * 119.99577 * 353.98264 * 9 8 7 12 12 C 1.46502 * 120.00355 * 3.69623 * 11 9 8 13 13 C 1.50699 * 109.46921 * 82.90929 * 12 11 9 14 14 H 1.07999 * 119.99868 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00108 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00079 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00037 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47283 * 89.99695 * 17 15 13 19 19 H 1.48503 * 109.46926 * 209.99249 * 17 15 13 20 20 H 1.48498 * 109.46904 * 329.99460 * 17 15 13 21 21 C 1.46506 * 119.99840 * 183.70397 * 11 9 8 22 22 C 1.50702 * 109.47291 * 89.99590 * 21 11 9 23 23 C 1.34508 * 125.78806 * 89.71744 * 22 21 11 24 24 C 1.41388 * 106.84004 * 179.89014 * 23 22 21 25 25 C 1.34519 * 106.83747 * 0.37132 * 24 23 22 26 26 O 1.34298 * 108.42044 * 359.77356 * 25 24 23 27 27 C 1.37571 * 106.99572 * 0.36137 * 4 3 2 28 28 N 1.31854 * 108.10387 * 359.77161 * 27 4 3 29 29 H 1.09005 * 109.46990 * 269.71319 * 1 2 3 30 30 H 1.09000 * 109.47169 * 149.71353 * 1 2 3 31 31 H 1.08998 * 109.47418 * 29.71183 * 1 2 3 32 32 H 1.08000 * 126.43014 * 0.04145 * 3 2 1 33 33 H 1.07997 * 119.73883 * 0.32255 * 5 4 3 34 34 H 1.07997 * 118.94320 * 179.97438 * 6 5 4 35 35 H 1.09002 * 109.47172 * 202.90700 * 12 11 9 36 36 H 1.08996 * 109.46789 * 322.90782 * 12 11 9 37 37 H 0.96999 * 120.00233 * 180.02562 * 16 15 13 38 38 H 1.09001 * 109.46882 * 209.99775 * 21 11 9 39 39 H 1.09006 * 109.46900 * 329.99635 * 21 11 9 40 40 H 1.08002 * 126.58120 * 0.02562 * 23 22 21 41 41 H 1.07994 * 126.58168 * 180.16280 * 24 23 22 42 42 H 1.08001 * 125.78830 * 179.75297 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2967 1.0992 0.0000 4 7 3.5875 0.6661 0.0023 5 6 4.7955 1.2955 0.0048 6 6 5.9451 0.5785 -0.0002 7 7 5.9488 -0.7484 -0.0069 8 6 4.8190 -1.4366 -0.0094 9 6 4.8385 -2.9145 -0.0174 10 8 3.7998 -3.5367 0.0907 11 7 6.0080 -3.5722 -0.1444 12 6 7.2672 -2.8250 -0.1932 13 6 7.7150 -2.5033 1.2093 14 1 7.1208 -2.8230 2.0525 15 6 8.8826 -1.7999 1.4159 16 7 9.6059 -1.4101 0.3890 17 14 9.4380 -1.4016 3.1544 18 1 10.3011 -2.4984 3.6618 19 1 10.2050 -0.1300 3.1499 20 1 8.2496 -1.2600 4.0334 21 6 6.0200 -5.0345 -0.2340 22 6 5.9185 -5.4502 -1.6790 23 6 6.9535 -5.6482 -2.5150 24 6 6.4058 -6.0275 -3.7621 25 6 5.0686 -6.0307 -3.6157 26 8 4.7793 -5.6802 -2.3519 27 6 3.5502 -0.7091 -0.0046 28 7 2.2863 -1.0847 -0.0059 29 1 -0.3633 -0.0051 1.0277 30 1 -0.3633 -0.8874 -0.5183 31 1 -0.3634 0.8925 -0.5093 32 1 1.9651 2.1271 0.0006 33 1 4.8373 2.3747 0.0106 34 1 6.8887 1.1038 0.0015 35 1 8.0285 -3.4279 -0.6884 36 1 7.1189 -1.8991 -0.7488 37 1 10.4276 -0.9155 0.5343 38 1 6.9486 -5.4168 0.1898 39 1 5.1736 -5.4394 0.3209 40 1 8.0017 -5.5403 -2.2785 41 1 6.9554 -6.2655 -4.6608 42 1 4.3497 -6.2735 -4.3842 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345831941.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:24 Heat of formation + Delta-G solvation = 97.093984 kcal Electronic energy + Delta-G solvation = -29641.436484 eV Core-core repulsion = 25590.620018 eV Total energy + Delta-G solvation = -4050.816466 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -44.00300 -43.45580 -40.84278 -39.27395 -36.89624 -35.46721 -34.53114 -33.84613 -32.77019 -31.92401 -30.59581 -29.15362 -28.78839 -27.25761 -25.49630 -24.53726 -24.28695 -22.59893 -22.08340 -21.60423 -20.79425 -19.30900 -18.88210 -18.64112 -18.01232 -17.44330 -17.28278 -17.03791 -16.61831 -16.36869 -16.22222 -16.06248 -15.42771 -15.20274 -14.81077 -14.39256 -14.30872 -14.17591 -13.95350 -13.82740 -13.68993 -13.58969 -13.41799 -13.18642 -13.07257 -12.94946 -12.66390 -12.52580 -12.34021 -12.08957 -11.66020 -11.25098 -11.08322 -10.82442 -10.59643 -10.11862 -9.81119 -9.52317 -9.39965 -9.15170 -8.02584 -6.08050 -0.88907 0.23926 0.72239 1.34515 1.42089 1.45983 1.52972 1.61876 1.69746 1.81504 2.13812 2.26668 2.49199 2.70197 2.94275 3.14980 3.27407 3.30275 3.67957 3.83046 3.99671 4.14843 4.16387 4.17879 4.24640 4.28647 4.38779 4.55488 4.77540 4.85765 4.89638 4.90560 4.95439 5.04083 5.06785 5.09848 5.20239 5.53488 5.59077 5.64254 5.84015 5.88910 5.90325 6.25048 6.28634 6.44542 6.63500 6.84739 6.96431 7.20449 7.55039 9.04719 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.007098 B = 0.005985 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3943.706997 B = 4677.103313 C = 7747.685058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.028 3.972 3 C -0.070 4.070 4 N -0.357 5.357 5 C 0.057 3.943 6 C 0.004 3.996 7 N -0.368 5.368 8 C 0.120 3.880 9 C 0.565 3.435 10 O -0.558 6.558 11 N -0.575 5.575 12 C 0.244 3.756 13 C -0.506 4.506 14 H 0.033 0.967 15 C 0.041 3.959 16 N -0.909 5.909 17 Si 0.937 3.063 18 H -0.280 1.280 19 H -0.276 1.276 20 H -0.286 1.286 21 C 0.193 3.807 22 C -0.047 4.047 23 C -0.200 4.200 24 C -0.221 4.221 25 C -0.046 4.046 26 O -0.194 6.194 27 C 0.170 3.830 28 N -0.492 5.492 29 H 0.084 0.916 30 H 0.063 0.937 31 H 0.110 0.890 32 H 0.241 0.759 33 H 0.232 0.768 34 H 0.199 0.801 35 H 0.014 0.986 36 H 0.076 0.924 37 H 0.263 0.737 38 H 0.125 0.875 39 H 0.085 0.915 40 H 0.153 0.847 41 H 0.176 0.824 42 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.886 6.401 -5.825 13.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.105 4.105 3 C -0.202 4.202 4 N -0.031 5.031 5 C -0.068 4.068 6 C -0.137 4.137 7 N -0.083 5.083 8 C -0.043 4.043 9 C 0.352 3.648 10 O -0.437 6.437 11 N -0.305 5.305 12 C 0.124 3.876 13 C -0.546 4.546 14 H 0.052 0.948 15 C -0.160 4.160 16 N -0.549 5.549 17 Si 0.764 3.236 18 H -0.206 1.206 19 H -0.202 1.202 20 H -0.212 1.212 21 C 0.070 3.930 22 C -0.098 4.098 23 C -0.220 4.220 24 C -0.240 4.240 25 C -0.113 4.113 26 O -0.090 6.090 27 C -0.078 4.078 28 N -0.214 5.214 29 H 0.103 0.897 30 H 0.082 0.918 31 H 0.128 0.872 32 H 0.257 0.743 33 H 0.248 0.752 34 H 0.216 0.784 35 H 0.032 0.968 36 H 0.093 0.907 37 H 0.073 0.927 38 H 0.143 0.857 39 H 0.104 0.896 40 H 0.171 0.829 41 H 0.193 0.807 42 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -9.946 5.183 -5.676 12.570 hybrid contribution 0.553 1.123 0.947 1.570 sum -9.393 6.306 -4.730 12.262 Atomic orbital electron populations 1.20265 0.83922 1.04319 1.03759 1.22066 0.99054 0.87496 1.01873 1.23252 0.78886 1.02825 1.15285 1.43104 1.07795 1.07848 1.44377 1.23546 0.81481 1.02637 0.99165 1.22889 0.99366 0.89391 1.02075 1.69074 1.24873 1.09389 1.04938 1.21854 0.84855 0.94434 1.03166 1.17658 0.83755 0.85784 0.77598 1.90749 1.32942 1.68102 1.51866 1.48254 1.07841 1.06272 1.68130 1.19839 0.78008 0.92415 0.97307 1.21267 1.06491 1.34883 0.91930 0.94828 1.25206 0.96277 0.95465 0.99004 1.69999 1.15180 1.39057 1.30616 0.85910 0.77833 0.77973 0.81857 1.20555 1.20156 1.21166 1.19835 1.04893 0.80414 0.87840 1.23002 0.83796 1.06357 0.96606 1.21903 1.00055 1.06009 0.94031 1.22153 0.94445 1.07803 0.99584 1.24884 0.98300 1.03477 0.84657 1.84089 1.34645 1.67079 1.23222 1.22415 0.94174 0.82202 1.08960 1.70491 0.98832 1.31199 1.20863 0.89714 0.91841 0.87178 0.74292 0.75158 0.78405 0.96756 0.90745 0.92733 0.85671 0.89649 0.82931 0.80677 0.74598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.26 10.42 71.24 0.74 -0.52 16 2 C 0.03 0.81 7.07 41.63 0.29 1.11 16 3 C -0.07 -1.64 11.70 83.35 0.98 -0.67 16 4 N -0.36 -10.76 2.95 -347.29 -1.02 -11.79 16 5 C 0.06 1.37 11.00 83.38 0.92 2.29 16 6 C 0.00 0.12 11.01 83.93 0.92 1.04 16 7 N -0.37 -15.80 5.23 -181.37 -0.95 -16.75 16 8 C 0.12 5.51 6.83 43.69 0.30 5.81 16 9 C 0.57 28.11 7.59 86.77 0.66 28.76 16 10 O -0.56 -29.81 15.81 -3.91 -0.06 -29.88 16 11 N -0.58 -27.00 2.46 -833.94 -2.05 -29.05 16 12 C 0.24 12.12 4.77 85.63 0.41 12.52 16 13 C -0.51 -26.62 8.09 25.60 0.21 -26.41 16 14 H 0.03 1.87 7.81 -2.91 -0.02 1.84 16 15 C 0.04 2.09 5.46 84.65 0.46 2.56 16 16 N -0.91 -47.97 13.29 21.45 0.28 -47.68 16 17 Si 0.94 41.70 29.54 68.60 2.03 43.73 16 18 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 19 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 20 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 21 C 0.19 7.90 5.93 85.63 0.51 8.41 16 22 C -0.05 -1.81 6.90 24.83 0.17 -1.64 16 23 C -0.20 -6.89 10.81 22.19 0.24 -6.65 16 24 C -0.22 -6.31 10.91 22.19 0.24 -6.07 16 25 C -0.05 -1.32 12.09 66.97 0.81 -0.51 16 26 O -0.19 -7.47 10.65 -2.44 -0.03 -7.50 16 27 C 0.17 7.04 7.66 135.58 1.04 8.07 16 28 N -0.49 -20.44 10.75 -177.72 -1.91 -22.36 16 29 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 30 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.24 2.61 8.06 -2.91 -0.02 2.58 16 33 H 0.23 2.56 8.06 -2.91 -0.02 2.54 16 34 H 0.20 5.44 8.06 -2.91 -0.02 5.42 16 35 H 0.01 0.75 8.02 -2.39 -0.02 0.73 16 36 H 0.08 3.88 5.20 -2.98 -0.02 3.87 16 37 H 0.26 13.21 8.31 -92.71 -0.77 12.44 16 38 H 0.13 4.66 8.07 -2.39 -0.02 4.64 16 39 H 0.09 3.54 7.37 -2.38 -0.02 3.52 16 40 H 0.15 5.03 8.06 -2.91 -0.02 5.00 16 41 H 0.18 3.75 8.06 -2.91 -0.02 3.72 16 42 H 0.24 4.39 8.06 -2.91 -0.02 4.37 16 Total: -1.00 -79.75 367.78 6.24 -73.51 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: 1.06 Total: 19.66 kcal Atomic # 6 Polarization: 19.21 SS G_CDS: 8.90 Total: 28.11 kcal Atomic # 7 Polarization: -121.97 SS G_CDS: -5.65 Total: -127.62 kcal Atomic # 8 Polarization: -37.28 SS G_CDS: -0.09 Total: -37.37 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Total: -79.75 6.24 -73.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345831941.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.600 kcal (2) G-P(sol) polarization free energy of solvation -79.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds