Wall clock time and date at job start Sat Apr 11 2020 05:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38144 * 119.96667 * 2 1 4 4 C 1.38841 * 119.92890 * 180.28007 * 3 2 1 5 5 N 1.39956 * 120.06532 * 179.70268 * 4 3 2 6 6 C 1.34773 * 119.99641 * 213.28294 * 5 4 3 7 7 O 1.21590 * 120.00279 * 5.32099 * 6 5 4 8 8 N 1.34770 * 119.99905 * 185.31471 * 6 5 4 9 9 C 1.46506 * 120.00166 * 180.02562 * 8 6 5 10 10 C 1.52993 * 109.47227 * 180.02562 * 9 8 6 11 11 C 1.53005 * 109.47373 * 180.02562 * 10 9 8 12 12 C 1.50694 * 109.47243 * 180.02562 * 11 10 9 13 13 H 1.08003 * 120.00306 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99988 * 180.02562 * 12 11 10 15 15 N 1.31509 * 120.00435 * 180.02562 * 14 12 11 16 16 Si 1.86802 * 119.99924 * 359.97438 * 14 12 11 17 17 H 1.48495 * 109.47378 * 90.00079 * 16 14 12 18 18 H 1.48501 * 109.47381 * 210.00209 * 16 14 12 19 19 H 1.48510 * 109.46837 * 330.00116 * 16 14 12 20 20 C 1.38880 * 119.86242 * 359.71756 * 4 3 2 21 21 C 1.38093 * 119.93289 * 0.02562 * 20 4 3 22 22 C 1.38259 * 119.96781 * 179.74656 * 2 1 3 23 23 S 1.76199 * 119.92796 * 0.02562 * 22 2 1 24 24 C 1.81401 * 104.44843 * 294.72231 * 23 22 2 25 25 O 1.42095 * 104.27843 * 178.65312 * 23 22 2 26 26 O 1.42099 * 104.27859 * 50.79093 * 23 22 2 27 27 H 1.09005 * 109.46529 * 270.25258 * 1 2 3 28 28 H 1.09000 * 109.47298 * 30.25343 * 1 2 3 29 29 H 1.08998 * 109.47219 * 150.25898 * 1 2 3 30 30 H 1.08003 * 120.03171 * 359.97438 * 3 2 1 31 31 H 0.96992 * 120.00130 * 33.28686 * 5 4 3 32 32 H 0.97001 * 120.00369 * 0.02562 * 8 6 5 33 33 H 1.09008 * 109.46860 * 300.00281 * 9 8 6 34 34 H 1.08997 * 109.47070 * 60.00152 * 9 8 6 35 35 H 1.09002 * 109.47444 * 300.00349 * 10 9 8 36 36 H 1.09002 * 109.47448 * 59.99871 * 10 9 8 37 37 H 1.09008 * 109.46772 * 300.00266 * 11 10 9 38 38 H 1.09002 * 109.46953 * 59.99550 * 11 10 9 39 39 H 0.97001 * 120.00423 * 179.97438 * 15 14 12 40 40 H 1.08005 * 120.03643 * 179.97438 * 20 4 3 41 41 H 1.07997 * 119.96816 * 180.02562 * 21 20 4 42 42 H 1.09007 * 109.47320 * 300.00273 * 24 23 22 43 43 H 1.09000 * 109.47195 * 60.00215 * 24 23 22 44 44 H 1.08999 * 109.47514 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1968 0.0000 4 6 3.5854 1.1959 -0.0059 5 7 4.2873 2.4066 -0.0122 6 6 5.4667 2.4984 -0.6580 7 8 5.8745 1.5604 -1.3154 8 7 6.1940 3.6300 -0.5752 9 6 7.4758 3.7300 -1.2777 10 6 8.0925 5.1062 -1.0200 11 6 9.4309 5.2110 -1.7542 12 6 10.0386 6.5663 -1.4999 13 1 9.5218 7.2817 -0.8773 14 6 11.2539 6.8935 -2.0629 15 7 11.7846 8.0760 -1.8407 16 14 12.1475 5.6564 -3.1403 17 1 11.7259 5.8347 -4.5529 18 1 13.6127 5.8713 -3.0302 19 1 11.8141 4.2797 -2.6942 20 6 4.2761 -0.0090 -0.0058 21 6 3.5806 -1.2020 -0.0004 22 6 2.1976 -1.1977 0.0053 23 16 1.3138 -2.7220 0.0114 24 6 0.4506 -2.7384 1.6067 25 8 2.3291 -3.7159 -0.0164 26 8 0.3854 -2.5931 -1.0566 27 1 -0.3632 0.0045 1.0277 28 1 -0.3634 0.8877 -0.5178 29 1 -0.3633 -0.8923 -0.5098 30 1 1.6570 2.1321 -0.0004 31 1 3.9251 3.1796 0.4482 32 1 5.8689 4.3783 -0.0505 33 1 8.1511 2.9556 -0.9135 34 1 7.3150 3.5980 -2.3476 35 1 7.4174 5.8808 -1.3838 36 1 8.2534 5.2378 0.0500 37 1 10.1062 4.4363 -1.3907 38 1 9.2696 5.0795 -2.8241 39 1 12.6398 8.3061 -2.2364 40 1 5.3562 -0.0130 -0.0108 41 1 4.1172 -2.1392 0.0000 42 1 1.1801 -2.6877 2.4152 43 1 -0.2184 -1.8800 1.6667 44 1 -0.1282 -3.6576 1.6973 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346750513.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:28 Heat of formation + Delta-G solvation = -75.254126 kcal Electronic energy + Delta-G solvation = -26132.067369 eV Core-core repulsion = 22176.928528 eV Total energy + Delta-G solvation = -3955.138840 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 2.58 seconds Orbital eigenvalues (eV) -40.97514 -39.27303 -37.56770 -36.33995 -36.01862 -35.12357 -33.52834 -32.92725 -31.62871 -30.44539 -29.79935 -27.44173 -27.18348 -23.84240 -22.98817 -22.28459 -21.00774 -20.32960 -19.41968 -18.65238 -17.89540 -17.63284 -16.74424 -16.71844 -16.48155 -15.88776 -15.31498 -15.16468 -14.80743 -14.70700 -14.40944 -14.30250 -14.00875 -13.87639 -13.68178 -13.49190 -13.33880 -13.05828 -12.75232 -12.64721 -12.43484 -12.17728 -12.02298 -11.98736 -11.73585 -11.41362 -11.17821 -11.05734 -10.97876 -10.81998 -10.42897 -10.09528 -9.92219 -9.75949 -9.28798 -9.21933 -9.11150 -8.64235 -8.60004 -6.10831 -4.10082 -0.33133 0.47770 0.97034 2.29189 2.50567 2.78532 3.22096 3.28320 3.36229 3.39908 3.48862 3.75985 3.93343 4.21862 4.27239 4.35770 4.40412 4.52638 4.76117 4.90114 4.98892 5.05173 5.13441 5.23177 5.24509 5.36898 5.40980 5.54869 5.55945 5.69970 5.85962 5.89900 5.91685 6.10210 6.18173 6.35102 6.48361 6.59968 6.66733 6.72214 7.15830 7.29220 7.67700 7.72239 8.29366 8.44867 8.92347 9.51175 11.02242 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.031508 B = 0.001713 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.446473 B =16338.040746 C =16889.172006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.033 3.967 3 C -0.176 4.176 4 C 0.236 3.764 5 N -0.691 5.691 6 C 0.699 3.301 7 O -0.569 6.569 8 N -0.732 5.732 9 C 0.130 3.870 10 C -0.113 4.113 11 C -0.011 4.011 12 C -0.524 4.524 13 H 0.072 0.928 14 C 0.067 3.933 15 N -0.902 5.902 16 Si 0.880 3.120 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.264 1.264 20 C -0.149 4.149 21 C 0.004 3.996 22 C -0.687 4.687 23 S 2.503 3.497 24 C -0.655 4.655 25 O -0.941 6.941 26 O -0.937 6.937 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.105 0.895 30 H 0.134 0.866 31 H 0.410 0.590 32 H 0.398 0.602 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.019 0.981 38 H 0.015 0.985 39 H 0.264 0.736 40 H 0.147 0.853 41 H 0.148 0.852 42 H 0.134 0.866 43 H 0.133 0.867 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.682 -18.891 10.535 35.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.031 3.969 3 C -0.198 4.198 4 C 0.139 3.861 5 N -0.338 5.338 6 C 0.399 3.601 7 O -0.445 6.445 8 N -0.385 5.385 9 C 0.007 3.993 10 C -0.151 4.151 11 C -0.049 4.049 12 C -0.562 4.562 13 H 0.090 0.910 14 C -0.135 4.135 15 N -0.541 5.541 16 Si 0.707 3.293 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.189 1.189 20 C -0.171 4.171 21 C -0.016 4.016 22 C -0.775 4.775 23 S 2.683 3.317 24 C -0.805 4.805 25 O -0.938 6.938 26 O -0.934 6.934 27 H 0.102 0.898 28 H 0.106 0.894 29 H 0.123 0.877 30 H 0.152 0.848 31 H 0.246 0.754 32 H 0.232 0.768 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.038 0.962 38 H 0.033 0.967 39 H 0.074 0.926 40 H 0.165 0.835 41 H 0.166 0.834 42 H 0.152 0.848 43 H 0.151 0.849 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -27.023 -20.159 9.218 34.952 hybrid contribution 0.442 1.229 0.458 1.384 sum -26.582 -18.931 9.676 34.038 Atomic orbital electron populations 1.21687 0.90519 1.07239 1.03628 1.19222 0.95407 0.91254 0.91016 1.20802 0.91945 0.98626 1.08385 1.17783 0.90544 0.85380 0.92419 1.42878 1.21909 1.12704 1.56323 1.15996 0.79915 0.84139 0.80060 1.90975 1.70931 1.38032 1.44520 1.45391 1.23030 1.15439 1.54677 1.21643 0.81412 0.99803 0.96422 1.21722 0.98935 0.92945 1.01519 1.19503 0.91866 0.98164 0.95348 1.21072 1.04904 0.98569 1.31628 0.91020 1.25028 0.97182 0.95159 0.96085 1.69904 1.18675 1.20541 1.44945 0.86777 0.78868 0.82472 0.81185 1.20215 1.21326 1.18880 1.21360 1.01815 0.90568 1.03330 1.20847 0.91561 0.99139 0.90025 1.30083 1.06036 1.18104 1.23290 1.04999 0.75260 0.74227 0.77187 1.30311 1.15083 1.11942 1.23153 1.93565 1.56580 1.56948 1.86691 1.93541 1.64148 1.85818 1.49862 0.89817 0.89408 0.87673 0.84786 0.75395 0.76767 0.91531 0.91569 0.92046 0.91997 0.96222 0.96661 0.92646 0.83504 0.83406 0.84761 0.84895 0.84953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.90 8.47 36.01 0.30 -0.60 16 2 C 0.03 0.26 5.86 -104.65 -0.61 -0.35 16 3 C -0.18 -1.46 9.62 -39.39 -0.38 -1.84 16 4 C 0.24 2.48 6.28 -83.69 -0.53 1.95 16 5 N -0.69 -6.63 5.35 -14.23 -0.08 -6.70 16 6 C 0.70 9.31 8.30 -86.93 -0.72 8.59 16 7 O -0.57 -9.88 14.03 5.29 0.07 -9.81 16 8 N -0.73 -8.97 5.56 -65.22 -0.36 -9.34 16 9 C 0.13 2.01 5.67 -4.04 -0.02 1.99 16 10 C -0.11 -1.99 5.27 -26.73 -0.14 -2.13 16 11 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 12 C -0.52 -14.45 9.66 -34.44 -0.33 -14.78 16 13 H 0.07 2.11 7.99 -52.48 -0.42 1.69 16 14 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 15 N -0.90 -27.36 13.96 55.43 0.77 -26.58 16 16 Si 0.88 21.46 27.47 -169.99 -4.67 16.80 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.26 -6.20 6.54 56.52 0.37 -5.83 16 20 C -0.15 -1.76 8.65 -39.40 -0.34 -2.10 16 21 C 0.00 0.04 9.49 -39.61 -0.38 -0.33 16 22 C -0.69 -6.11 5.58 -39.55 -0.22 -6.34 16 23 S 2.50 18.54 5.20 -107.50 -0.56 17.98 16 24 C -0.66 -1.72 10.59 101.05 1.07 -0.65 16 25 O -0.94 -10.05 16.73 -57.54 -0.96 -11.02 16 26 O -0.94 -9.47 15.33 -57.54 -0.88 -10.35 16 27 H 0.08 0.18 7.11 -51.93 -0.37 -0.19 16 28 H 0.09 0.38 8.09 -51.93 -0.42 -0.04 16 29 H 0.10 0.62 4.87 -51.93 -0.25 0.37 16 30 H 0.13 0.76 8.06 -52.48 -0.42 0.34 16 31 H 0.41 2.39 8.83 -40.82 -0.36 2.03 16 32 H 0.40 3.65 8.49 -40.82 -0.35 3.31 16 33 H 0.07 1.08 8.14 -51.92 -0.42 0.66 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.02 0.45 7.20 -51.92 -0.37 0.07 16 38 H 0.02 0.34 7.57 -51.93 -0.39 -0.05 16 39 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 40 H 0.15 1.94 6.41 -52.48 -0.34 1.60 16 41 H 0.15 1.40 7.20 -52.49 -0.38 1.02 16 42 H 0.13 0.19 8.14 -51.92 -0.42 -0.24 16 43 H 0.13 0.13 6.03 -51.92 -0.31 -0.19 16 44 H 0.13 0.14 8.14 -51.92 -0.42 -0.29 16 LS Contribution 372.36 15.07 5.61 5.61 Total: -1.00 -38.35 372.36 -9.65 -48.00 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -6.09 Total: 0.54 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: -2.51 Total: -15.12 kcal Atomic # 7 Polarization: -42.96 SS G_CDS: 0.33 Total: -42.62 kcal Atomic # 8 Polarization: -29.41 SS G_CDS: -1.77 Total: -31.18 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.80 kcal Atomic # 16 Polarization: 18.54 SS G_CDS: -0.56 Total: 17.98 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -38.35 -9.65 -48.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346750513.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.256 kcal (2) G-P(sol) polarization free energy of solvation -38.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.58 seconds