Wall clock time and date at job start Sat Apr 11 2020 05:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38144 * 119.96667 * 2 1 4 4 C 1.38841 * 119.92890 * 180.28007 * 3 2 1 5 5 N 1.39956 * 120.06532 * 179.70268 * 4 3 2 6 6 C 1.34773 * 119.99641 * 213.28294 * 5 4 3 7 7 O 1.21590 * 120.00279 * 5.32099 * 6 5 4 8 8 N 1.34770 * 119.99905 * 185.31471 * 6 5 4 9 9 C 1.46506 * 120.00166 * 180.02562 * 8 6 5 10 10 C 1.52993 * 109.47227 * 180.02562 * 9 8 6 11 11 C 1.53005 * 109.47373 * 180.02562 * 10 9 8 12 12 C 1.50694 * 109.47243 * 180.02562 * 11 10 9 13 13 H 1.08003 * 120.00306 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99988 * 180.02562 * 12 11 10 15 15 N 1.31509 * 120.00435 * 180.02562 * 14 12 11 16 16 Si 1.86802 * 119.99924 * 359.97438 * 14 12 11 17 17 H 1.48495 * 109.47378 * 90.00079 * 16 14 12 18 18 H 1.48501 * 109.47381 * 210.00209 * 16 14 12 19 19 H 1.48510 * 109.46837 * 330.00116 * 16 14 12 20 20 C 1.38880 * 119.86242 * 359.71756 * 4 3 2 21 21 C 1.38093 * 119.93289 * 0.02562 * 20 4 3 22 22 C 1.38259 * 119.96781 * 179.74656 * 2 1 3 23 23 S 1.76199 * 119.92796 * 0.02562 * 22 2 1 24 24 C 1.81401 * 104.44843 * 294.72231 * 23 22 2 25 25 O 1.42095 * 104.27843 * 178.65312 * 23 22 2 26 26 O 1.42099 * 104.27859 * 50.79093 * 23 22 2 27 27 H 1.09005 * 109.46529 * 270.25258 * 1 2 3 28 28 H 1.09000 * 109.47298 * 30.25343 * 1 2 3 29 29 H 1.08998 * 109.47219 * 150.25898 * 1 2 3 30 30 H 1.08003 * 120.03171 * 359.97438 * 3 2 1 31 31 H 0.96992 * 120.00130 * 33.28686 * 5 4 3 32 32 H 0.97001 * 120.00369 * 0.02562 * 8 6 5 33 33 H 1.09008 * 109.46860 * 300.00281 * 9 8 6 34 34 H 1.08997 * 109.47070 * 60.00152 * 9 8 6 35 35 H 1.09002 * 109.47444 * 300.00349 * 10 9 8 36 36 H 1.09002 * 109.47448 * 59.99871 * 10 9 8 37 37 H 1.09008 * 109.46772 * 300.00266 * 11 10 9 38 38 H 1.09002 * 109.46953 * 59.99550 * 11 10 9 39 39 H 0.97001 * 120.00423 * 179.97438 * 15 14 12 40 40 H 1.08005 * 120.03643 * 179.97438 * 20 4 3 41 41 H 1.07997 * 119.96816 * 180.02562 * 21 20 4 42 42 H 1.09007 * 109.47320 * 300.00273 * 24 23 22 43 43 H 1.09000 * 109.47195 * 60.00215 * 24 23 22 44 44 H 1.08999 * 109.47514 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1968 0.0000 4 6 3.5854 1.1959 -0.0059 5 7 4.2873 2.4066 -0.0122 6 6 5.4667 2.4984 -0.6580 7 8 5.8745 1.5604 -1.3154 8 7 6.1940 3.6300 -0.5752 9 6 7.4758 3.7300 -1.2777 10 6 8.0925 5.1062 -1.0200 11 6 9.4309 5.2110 -1.7542 12 6 10.0386 6.5663 -1.4999 13 1 9.5218 7.2817 -0.8773 14 6 11.2539 6.8935 -2.0629 15 7 11.7846 8.0760 -1.8407 16 14 12.1475 5.6564 -3.1403 17 1 11.7259 5.8347 -4.5529 18 1 13.6127 5.8713 -3.0302 19 1 11.8141 4.2797 -2.6942 20 6 4.2761 -0.0090 -0.0058 21 6 3.5806 -1.2020 -0.0004 22 6 2.1976 -1.1977 0.0053 23 16 1.3138 -2.7220 0.0114 24 6 0.4506 -2.7384 1.6067 25 8 2.3291 -3.7159 -0.0164 26 8 0.3854 -2.5931 -1.0566 27 1 -0.3632 0.0045 1.0277 28 1 -0.3634 0.8877 -0.5178 29 1 -0.3633 -0.8923 -0.5098 30 1 1.6570 2.1321 -0.0004 31 1 3.9251 3.1796 0.4482 32 1 5.8689 4.3783 -0.0505 33 1 8.1511 2.9556 -0.9135 34 1 7.3150 3.5980 -2.3476 35 1 7.4174 5.8808 -1.3838 36 1 8.2534 5.2378 0.0500 37 1 10.1062 4.4363 -1.3907 38 1 9.2696 5.0795 -2.8241 39 1 12.6398 8.3061 -2.2364 40 1 5.3562 -0.0130 -0.0108 41 1 4.1172 -2.1392 0.0000 42 1 1.1801 -2.6877 2.4152 43 1 -0.2184 -1.8800 1.6667 44 1 -0.1282 -3.6576 1.6973 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346750513.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:27 Heat of formation + Delta-G solvation = -105.380752 kcal Electronic energy + Delta-G solvation = -26133.373757 eV Core-core repulsion = 22176.928528 eV Total energy + Delta-G solvation = -3956.445229 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.88643 -40.10165 -38.23076 -37.26927 -36.97045 -36.13454 -35.23570 -33.74352 -33.23133 -31.23489 -30.20116 -28.81290 -27.96896 -25.14386 -23.86269 -23.33350 -22.30216 -21.56298 -20.05039 -19.64694 -19.00840 -18.55007 -18.30710 -17.37877 -17.12479 -16.85675 -16.58137 -16.11879 -15.99117 -15.66475 -15.46249 -15.23981 -15.00666 -14.78776 -14.44581 -14.18029 -13.97253 -13.90499 -13.81689 -13.72550 -13.54023 -13.14992 -13.06480 -12.76568 -12.73259 -12.66091 -12.42532 -11.98647 -11.92186 -11.81683 -11.69757 -11.66592 -11.59638 -11.34415 -11.24792 -10.77079 -10.26879 -9.85994 -9.43982 -8.30333 -6.34036 -0.83287 -0.25289 0.26178 1.36045 1.36895 1.38374 1.49222 1.81359 1.95409 2.35229 2.46029 2.96114 3.03775 3.05630 3.26894 3.65834 3.78260 4.04111 4.13131 4.14032 4.18455 4.18999 4.29237 4.38571 4.47780 4.62570 4.74901 4.76222 4.85268 4.86456 4.87272 4.99206 5.02147 5.11527 5.17498 5.28384 5.32508 5.39749 5.47054 5.54719 5.63800 5.81355 5.86223 6.26229 6.74033 6.83788 7.30623 7.30987 8.85846 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.031508 B = 0.001713 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.446473 B =16338.040746 C =16889.172006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.033 3.967 3 C -0.169 4.169 4 C 0.217 3.783 5 N -0.672 5.672 6 C 0.698 3.302 7 O -0.613 6.613 8 N -0.720 5.720 9 C 0.144 3.856 10 C -0.099 4.099 11 C -0.013 4.013 12 C -0.530 4.530 13 H 0.039 0.961 14 C 0.005 3.995 15 N -0.949 5.949 16 Si 0.945 3.055 17 H -0.268 1.268 18 H -0.285 1.285 19 H -0.248 1.248 20 C -0.174 4.174 21 C -0.013 4.013 22 C -0.690 4.690 23 S 2.498 3.502 24 C -0.625 4.625 25 O -0.985 6.985 26 O -0.970 6.970 27 H 0.123 0.877 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.167 0.833 31 H 0.430 0.570 32 H 0.416 0.584 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.021 0.979 38 H 0.019 0.981 39 H 0.266 0.734 40 H 0.122 0.878 41 H 0.143 0.857 42 H 0.154 0.846 43 H 0.161 0.839 44 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.801 -19.730 11.751 38.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.031 3.969 3 C -0.191 4.191 4 C 0.120 3.880 5 N -0.321 5.321 6 C 0.398 3.602 7 O -0.493 6.493 8 N -0.375 5.375 9 C 0.020 3.980 10 C -0.137 4.137 11 C -0.051 4.051 12 C -0.568 4.568 13 H 0.058 0.942 14 C -0.192 4.192 15 N -0.590 5.590 16 Si 0.769 3.231 17 H -0.193 1.193 18 H -0.211 1.211 19 H -0.172 1.172 20 C -0.196 4.196 21 C -0.032 4.032 22 C -0.777 4.777 23 S 2.683 3.317 24 C -0.779 4.779 25 O -0.983 6.983 26 O -0.967 6.967 27 H 0.141 0.859 28 H 0.118 0.882 29 H 0.116 0.884 30 H 0.184 0.816 31 H 0.270 0.730 32 H 0.253 0.747 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.039 0.961 38 H 0.038 0.962 39 H 0.075 0.925 40 H 0.140 0.860 41 H 0.161 0.839 42 H 0.172 0.828 43 H 0.179 0.821 44 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -30.168 -20.965 10.434 38.190 hybrid contribution 1.260 1.493 0.200 1.964 sum -28.907 -19.472 10.634 36.440 Atomic orbital electron populations 1.21855 0.87954 1.07508 1.06211 1.19681 0.97217 0.90584 0.89429 1.21150 0.90860 1.00217 1.06829 1.17951 0.91577 0.84896 0.93573 1.42560 1.20571 1.13336 1.55633 1.16101 0.80668 0.83505 0.79894 1.90956 1.72201 1.39557 1.46540 1.45044 1.21988 1.15968 1.54543 1.21238 0.82542 0.97980 0.96231 1.21476 0.96661 0.94415 1.01148 1.19475 0.94226 0.95171 0.96272 1.21457 1.04811 1.00126 1.30396 0.94249 1.25965 0.98351 0.97072 0.97810 1.70049 1.19424 1.22768 1.46755 0.85729 0.77433 0.80530 0.79399 1.19334 1.21092 1.17155 1.21272 1.00883 0.92057 1.05375 1.20874 0.92700 0.98616 0.91026 1.30344 1.05365 1.19603 1.22413 1.05019 0.74629 0.72956 0.79125 1.30099 1.15231 1.14643 1.17952 1.93510 1.58538 1.58016 1.88192 1.93501 1.64117 1.85820 1.53285 0.85914 0.88195 0.88381 0.81569 0.73049 0.74729 0.92332 0.92395 0.91462 0.91448 0.96073 0.96218 0.92529 0.86032 0.83903 0.82765 0.82136 0.82414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.15 8.47 71.24 0.60 -0.54 16 2 C 0.03 0.44 5.86 -19.88 -0.12 0.33 16 3 C -0.17 -2.40 9.62 22.39 0.22 -2.18 16 4 C 0.22 4.40 6.28 38.14 0.24 4.64 16 5 N -0.67 -12.07 5.35 -317.18 -1.70 -13.77 16 6 C 0.70 18.31 8.30 179.06 1.49 19.80 16 7 O -0.61 -21.89 14.03 -4.00 -0.06 -21.95 16 8 N -0.72 -16.80 5.56 -478.53 -2.66 -19.46 16 9 C 0.14 4.33 5.67 86.38 0.49 4.82 16 10 C -0.10 -3.38 5.27 30.59 0.16 -3.21 16 11 C -0.01 -0.60 4.04 29.85 0.12 -0.48 16 12 C -0.53 -29.56 9.66 25.60 0.25 -29.31 16 13 H 0.04 2.38 7.99 -2.91 -0.02 2.36 16 14 C 0.01 0.29 5.47 84.66 0.46 0.75 16 15 N -0.95 -58.78 13.96 21.45 0.30 -58.48 16 16 Si 0.95 44.13 27.47 68.60 1.88 46.01 16 17 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 18 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 19 H -0.25 -10.83 6.54 99.48 0.65 -10.18 16 20 C -0.17 -4.33 8.65 22.39 0.19 -4.14 16 21 C -0.01 -0.28 9.49 22.25 0.21 -0.07 16 22 C -0.69 -11.82 5.58 22.29 0.12 -11.70 16 23 S 2.50 34.57 5.20 -56.49 -0.29 34.28 16 24 C -0.62 -0.62 10.59 113.37 1.20 0.58 16 25 O -0.99 -21.72 16.73 -127.65 -2.14 -23.86 16 26 O -0.97 -18.95 15.33 -127.65 -1.96 -20.90 16 27 H 0.12 -0.17 7.11 -2.38 -0.02 -0.19 16 28 H 0.10 0.45 8.09 -2.39 -0.02 0.43 16 29 H 0.10 0.87 4.87 -2.39 -0.01 0.86 16 30 H 0.17 1.19 8.06 -2.91 -0.02 1.17 16 31 H 0.43 3.96 8.83 -92.71 -0.82 3.15 16 32 H 0.42 6.77 8.49 -92.71 -0.79 5.98 16 33 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 34 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.02 0.93 7.20 -2.38 -0.02 0.92 16 38 H 0.02 0.86 7.57 -2.39 -0.02 0.84 16 39 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 40 H 0.12 3.56 6.41 -2.91 -0.02 3.54 16 41 H 0.14 3.09 7.20 -2.91 -0.02 3.06 16 42 H 0.15 -0.28 8.14 -2.39 -0.02 -0.30 16 43 H 0.16 -0.62 6.03 -2.39 -0.01 -0.64 16 44 H 0.16 -0.44 8.14 -2.39 -0.02 -0.46 16 Total: -1.00 -87.80 372.36 -1.59 -89.39 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -0.61 Total: 9.46 kcal Atomic # 6 Polarization: -26.36 SS G_CDS: 5.64 Total: -20.72 kcal Atomic # 7 Polarization: -87.65 SS G_CDS: -4.06 Total: -91.71 kcal Atomic # 8 Polarization: -62.57 SS G_CDS: -4.15 Total: -66.72 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.88 Total: 46.01 kcal Atomic # 16 Polarization: 34.57 SS G_CDS: -0.29 Total: 34.28 kcal Total: -87.80 -1.59 -89.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346750513.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.990 kcal (2) G-P(sol) polarization free energy of solvation -87.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds