Wall clock time and date at job start Sat Apr 11 2020 05:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38240 * 119.99947 * 2 1 4 4 C 1.38235 * 119.99838 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.99822 * 180.02562 * 4 3 2 6 6 C 1.38231 * 119.99927 * 359.97438 * 4 3 2 7 7 C 1.50702 * 120.00078 * 180.02562 * 6 4 3 8 8 C 1.38232 * 120.00290 * 0.02562 * 6 4 3 9 9 S 1.76200 * 120.00191 * 179.97438 * 8 6 4 10 10 O 1.42105 * 106.40501 * 196.74910 * 9 8 6 11 11 O 1.42105 * 106.40307 * 329.66212 * 9 8 6 12 12 N 1.65599 * 107.22058 * 83.20630 * 9 8 6 13 13 C 1.46498 * 119.99667 * 64.99940 * 12 9 8 14 14 C 1.50709 * 109.46631 * 165.00295 * 13 12 9 15 15 O 1.21290 * 119.99952 * 0.02562 * 14 13 12 16 16 N 1.34775 * 119.99536 * 179.97438 * 14 13 12 17 17 C 1.37101 * 119.99748 * 180.02562 * 16 14 13 18 18 H 1.07998 * 119.99759 * 359.97438 * 17 16 14 19 19 C 1.38952 * 120.00176 * 180.02562 * 17 16 14 20 20 N 1.31416 * 119.99725 * 359.97438 * 19 17 16 21 21 Si 1.86790 * 120.00215 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47286 * 59.99302 * 21 19 17 23 23 H 1.48497 * 109.47352 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46961 * 299.99432 * 21 19 17 25 25 C 1.38236 * 119.99855 * 179.72521 * 2 1 3 26 26 C 1.50697 * 119.99860 * 0.02562 * 25 2 1 27 27 H 1.09001 * 109.46832 * 90.00199 * 1 2 3 28 28 H 1.08996 * 109.47103 * 330.00316 * 1 2 3 29 29 H 1.08995 * 109.47128 * 209.99868 * 1 2 3 30 30 H 1.08003 * 119.99891 * 359.97438 * 3 2 1 31 31 H 1.09008 * 109.46536 * 90.00101 * 5 4 3 32 32 H 1.08994 * 109.47103 * 209.99844 * 5 4 3 33 33 H 1.08997 * 109.47289 * 330.00109 * 5 4 3 34 34 H 1.09004 * 109.46955 * 98.31354 * 7 6 4 35 35 H 1.08999 * 109.47454 * 218.31568 * 7 6 4 36 36 H 1.09003 * 109.46973 * 338.31830 * 7 6 4 37 37 H 0.97003 * 119.99671 * 245.00155 * 12 9 8 38 38 H 1.08996 * 109.47185 * 284.99933 * 13 12 9 39 39 H 1.08993 * 109.47047 * 45.00547 * 13 12 9 40 40 H 0.97001 * 120.00624 * 359.97438 * 16 14 13 41 41 H 0.97000 * 119.99785 * 180.02562 * 20 19 17 42 42 H 1.08994 * 109.47196 * 90.00612 * 26 25 2 43 43 H 1.09005 * 109.46635 * 210.00176 * 26 25 2 44 44 H 1.08992 * 109.47475 * 329.99899 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5806 1.1972 0.0005 5 6 4.3340 2.5023 0.0011 6 6 4.2717 0.0000 0.0016 7 6 5.7787 0.0000 0.0028 8 6 3.5805 -1.1971 0.0016 9 16 4.4615 -2.7231 0.0023 10 8 3.5318 -3.7234 -0.3907 11 8 5.6813 -2.4825 -0.6858 12 7 4.8681 -3.0537 1.5732 13 6 3.8191 -3.3179 2.5611 14 6 4.4314 -3.9407 3.7894 15 8 5.6263 -4.1435 3.8350 16 7 3.6511 -4.2714 4.8374 17 6 4.2081 -4.8375 5.9549 18 1 5.2720 -5.0188 5.9953 19 6 3.4037 -5.1789 7.0353 20 7 2.1090 -4.9587 6.9859 21 14 4.1624 -5.9509 8.5576 22 1 5.1653 -5.0211 9.1366 23 1 3.0993 -6.2181 9.5594 24 1 4.8260 -7.2267 8.1872 25 6 2.1982 -1.1972 0.0057 26 6 1.4446 -2.5022 0.0114 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 0.8900 0.5138 29 1 -0.3633 -0.8900 0.5138 30 1 1.6582 2.1325 -0.0004 31 1 4.5153 2.8166 1.0290 32 1 5.2866 2.3721 -0.5123 33 1 3.7452 3.2620 -0.5127 34 1 6.1412 -0.1482 1.0200 35 1 6.1425 -0.8066 -0.6337 36 1 6.1423 0.9548 -0.3771 37 1 5.8008 -3.0725 1.8391 38 1 3.3320 -2.3815 2.8330 39 1 3.0832 -4.0003 2.1361 40 1 2.6956 -4.1082 4.8013 41 1 1.5475 -5.1967 7.7402 42 1 1.2634 -2.8216 -1.0148 43 1 2.0335 -3.2595 0.5290 44 1 0.4921 -2.3695 0.5242 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352510794.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:41 Heat of formation + Delta-G solvation = -82.475088 kcal Electronic energy + Delta-G solvation = -28179.744742 eV Core-core repulsion = 24224.292777 eV Total energy + Delta-G solvation = -3955.451965 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.12801 -38.45861 -37.55974 -35.87966 -34.96321 -34.67768 -33.73438 -33.07150 -31.36490 -29.70211 -29.26543 -27.16686 -25.96696 -24.42315 -24.32139 -23.06739 -19.76559 -19.66321 -19.34484 -18.17090 -17.72367 -16.83859 -16.81851 -15.80961 -15.54217 -15.43005 -14.84443 -14.79180 -14.50429 -14.31527 -13.95224 -13.72092 -13.62964 -13.40742 -13.30339 -12.92449 -12.80441 -12.77863 -12.51259 -12.43465 -12.32617 -12.26077 -12.00186 -11.90702 -11.65697 -11.51952 -11.45414 -11.11388 -11.04050 -10.52028 -10.50618 -10.30987 -10.29578 -9.63063 -9.40462 -9.22229 -8.60821 -8.43131 -8.09937 -6.51752 -3.93413 0.42716 0.75275 1.14122 3.01487 3.13924 3.21585 3.25488 3.32083 3.71574 3.81347 4.09569 4.29193 4.53489 4.61196 4.64448 4.82854 4.84773 4.99939 5.02581 5.15204 5.24481 5.28205 5.35324 5.40929 5.43531 5.45895 5.56773 5.63851 5.68897 5.76216 5.76905 5.80306 5.88145 5.91355 6.04318 6.19172 6.26325 6.32996 6.37461 6.44896 6.79121 7.25135 7.46140 7.93064 8.45872 9.05170 9.39040 9.87740 10.65190 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013581 B = 0.003259 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.279590 B = 8589.888017 C = 9062.198236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.118 4.118 3 C -0.057 4.057 4 C -0.120 4.120 5 C -0.115 4.115 6 C 0.027 3.973 7 C -0.193 4.193 8 C -0.678 4.678 9 S 2.698 3.302 10 O -0.953 6.953 11 O -0.958 6.958 12 N -1.096 6.096 13 C 0.106 3.894 14 C 0.435 3.565 15 O -0.589 6.589 16 N -0.552 5.552 17 C -0.305 4.305 18 H 0.105 0.895 19 C 0.026 3.974 20 N -0.896 5.896 21 Si 0.933 3.067 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.272 1.272 25 C 0.022 3.978 26 C -0.156 4.156 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.126 0.874 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.134 0.866 36 H 0.079 0.921 37 H 0.427 0.573 38 H 0.079 0.921 39 H 0.094 0.906 40 H 0.395 0.605 41 H 0.274 0.726 42 H 0.089 0.911 43 H 0.103 0.897 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.471 13.357 -14.294 19.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.119 4.119 3 C -0.076 4.076 4 C -0.120 4.120 5 C -0.172 4.172 6 C 0.025 3.975 7 C -0.249 4.249 8 C -0.765 4.765 9 S 2.789 3.211 10 O -0.943 6.943 11 O -0.948 6.948 12 N -0.860 5.860 13 C -0.024 4.024 14 C 0.219 3.781 15 O -0.474 6.474 16 N -0.187 5.187 17 C -0.434 4.434 18 H 0.123 0.877 19 C -0.176 4.176 20 N -0.537 5.537 21 Si 0.760 3.240 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.198 1.198 25 C 0.021 3.979 26 C -0.212 4.212 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.144 0.856 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.101 0.899 35 H 0.152 0.848 36 H 0.097 0.903 37 H 0.267 0.733 38 H 0.097 0.903 39 H 0.112 0.888 40 H 0.229 0.771 41 H 0.084 0.916 42 H 0.107 0.893 43 H 0.121 0.879 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.827 12.650 -14.863 19.721 hybrid contribution -0.396 0.609 1.292 1.483 sum -3.223 13.259 -13.571 19.245 Atomic orbital electron populations 1.20854 0.90626 1.03301 1.02457 1.19832 0.96390 0.92481 1.03156 1.21149 0.93506 0.97647 0.95260 1.19827 0.93785 0.95096 1.03342 1.20853 1.00227 0.93486 1.02616 1.19404 0.95996 0.91061 0.90991 1.22078 0.90282 1.07200 1.05344 1.30478 1.05410 1.19599 1.21018 1.01610 0.73245 0.73902 0.72348 1.93574 1.63340 1.56589 1.80818 1.93391 1.44618 1.85228 1.71597 1.55070 1.16952 1.86751 1.27236 1.20976 0.89838 1.01035 0.90577 1.19583 0.87749 0.85841 0.84903 1.90506 1.15072 1.59908 1.81931 1.41801 1.10017 1.53327 1.13568 1.19689 0.95325 1.36573 0.91835 0.87724 1.25299 0.95244 0.97526 0.99575 1.69601 1.03888 1.47325 1.32855 0.85881 0.78350 0.79624 0.80168 1.19820 1.20880 1.19757 1.19513 0.91168 0.96092 0.91171 1.21675 1.01059 0.93661 1.04816 0.91136 0.91561 0.90564 0.85584 0.90985 0.90802 0.91655 0.89903 0.84849 0.90262 0.73347 0.90292 0.88787 0.77125 0.91588 0.89270 0.87926 0.90614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 9.61 36.01 0.35 -0.63 16 2 C -0.12 -1.32 5.88 -104.62 -0.62 -1.94 16 3 C -0.06 -0.60 9.36 -39.58 -0.37 -0.98 16 4 C -0.12 -1.34 5.88 -104.63 -0.62 -1.96 16 5 C -0.12 -0.96 9.58 36.01 0.35 -0.61 16 6 C 0.03 0.35 5.87 -104.63 -0.61 -0.27 16 7 C -0.19 -2.27 8.97 36.01 0.32 -1.94 16 8 C -0.68 -9.27 5.94 -39.58 -0.24 -9.51 16 9 S 2.70 40.12 5.18 -107.50 -0.56 39.57 16 10 O -0.95 -15.50 13.40 -57.17 -0.77 -16.27 16 11 O -0.96 -15.31 14.24 -57.17 -0.81 -16.13 16 12 N -1.10 -17.46 5.93 -11.66 -0.07 -17.53 16 13 C 0.11 1.80 6.31 -5.19 -0.03 1.76 16 14 C 0.44 9.80 7.85 -10.98 -0.09 9.72 16 15 O -0.59 -15.12 15.30 5.55 0.08 -15.03 16 16 N -0.55 -13.37 5.29 -10.96 -0.06 -13.43 16 17 C -0.30 -8.19 9.68 -14.93 -0.14 -8.34 16 18 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 19 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 20 N -0.90 -23.46 13.05 55.50 0.72 -22.74 16 21 Si 0.93 20.40 29.55 -169.99 -5.02 15.37 16 22 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 23 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 24 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 25 C 0.02 0.28 5.88 -104.62 -0.62 -0.33 16 26 C -0.16 -1.87 8.08 36.00 0.29 -1.58 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 29 H 0.08 0.61 5.94 -51.93 -0.31 0.30 16 30 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 31 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 32 H 0.07 0.56 5.88 -51.93 -0.31 0.26 16 33 H 0.06 0.44 8.09 -51.93 -0.42 0.02 16 34 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.13 1.76 4.55 -52.96 -0.24 1.52 16 36 H 0.08 0.74 5.66 -51.93 -0.29 0.45 16 37 H 0.43 7.02 7.70 -34.47 -0.27 6.76 16 38 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 39 H 0.09 1.44 6.70 -51.93 -0.35 1.10 16 40 H 0.40 9.03 7.90 -40.82 -0.32 8.71 16 41 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 42 H 0.09 1.02 8.12 -51.93 -0.42 0.60 16 43 H 0.10 1.36 3.74 -51.93 -0.19 1.17 16 44 H 0.08 0.74 5.94 -51.93 -0.31 0.44 16 LS Contribution 362.04 15.07 5.46 5.46 Total: -1.00 -32.39 362.04 -8.61 -41.00 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: -5.47 Total: 15.74 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: -2.12 Total: -16.02 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: 0.60 Total: -53.69 kcal Atomic # 8 Polarization: -45.93 SS G_CDS: -1.50 Total: -47.42 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 16 Polarization: 40.12 SS G_CDS: -0.56 Total: 39.57 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.39 -8.61 -41.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352510794.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.473 kcal (2) G-P(sol) polarization free energy of solvation -32.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds