Wall clock time and date at job start Sat Apr 11 2020 05:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38240 * 119.99947 * 2 1 4 4 C 1.38235 * 119.99838 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.99822 * 180.02562 * 4 3 2 6 6 C 1.38231 * 119.99927 * 359.97438 * 4 3 2 7 7 C 1.50702 * 120.00078 * 180.02562 * 6 4 3 8 8 C 1.38232 * 120.00290 * 0.02562 * 6 4 3 9 9 S 1.76200 * 120.00191 * 179.97438 * 8 6 4 10 10 O 1.42105 * 106.40501 * 196.74910 * 9 8 6 11 11 O 1.42105 * 106.40307 * 329.66212 * 9 8 6 12 12 N 1.65599 * 107.22058 * 83.20630 * 9 8 6 13 13 C 1.46498 * 119.99667 * 64.99940 * 12 9 8 14 14 C 1.50709 * 109.46631 * 165.00295 * 13 12 9 15 15 O 1.21290 * 119.99952 * 0.02562 * 14 13 12 16 16 N 1.34775 * 119.99536 * 179.97438 * 14 13 12 17 17 C 1.37101 * 119.99748 * 180.02562 * 16 14 13 18 18 H 1.07998 * 119.99759 * 359.97438 * 17 16 14 19 19 C 1.38952 * 120.00176 * 180.02562 * 17 16 14 20 20 N 1.31416 * 119.99725 * 359.97438 * 19 17 16 21 21 Si 1.86790 * 120.00215 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47286 * 59.99302 * 21 19 17 23 23 H 1.48497 * 109.47352 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46961 * 299.99432 * 21 19 17 25 25 C 1.38236 * 119.99855 * 179.72521 * 2 1 3 26 26 C 1.50697 * 119.99860 * 0.02562 * 25 2 1 27 27 H 1.09001 * 109.46832 * 90.00199 * 1 2 3 28 28 H 1.08996 * 109.47103 * 330.00316 * 1 2 3 29 29 H 1.08995 * 109.47128 * 209.99868 * 1 2 3 30 30 H 1.08003 * 119.99891 * 359.97438 * 3 2 1 31 31 H 1.09008 * 109.46536 * 90.00101 * 5 4 3 32 32 H 1.08994 * 109.47103 * 209.99844 * 5 4 3 33 33 H 1.08997 * 109.47289 * 330.00109 * 5 4 3 34 34 H 1.09004 * 109.46955 * 98.31354 * 7 6 4 35 35 H 1.08999 * 109.47454 * 218.31568 * 7 6 4 36 36 H 1.09003 * 109.46973 * 338.31830 * 7 6 4 37 37 H 0.97003 * 119.99671 * 245.00155 * 12 9 8 38 38 H 1.08996 * 109.47185 * 284.99933 * 13 12 9 39 39 H 1.08993 * 109.47047 * 45.00547 * 13 12 9 40 40 H 0.97001 * 120.00624 * 359.97438 * 16 14 13 41 41 H 0.97000 * 119.99785 * 180.02562 * 20 19 17 42 42 H 1.08994 * 109.47196 * 90.00612 * 26 25 2 43 43 H 1.09005 * 109.46635 * 210.00176 * 26 25 2 44 44 H 1.08992 * 109.47475 * 329.99899 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5806 1.1972 0.0005 5 6 4.3340 2.5023 0.0011 6 6 4.2717 0.0000 0.0016 7 6 5.7787 0.0000 0.0028 8 6 3.5805 -1.1971 0.0016 9 16 4.4615 -2.7231 0.0023 10 8 3.5318 -3.7234 -0.3907 11 8 5.6813 -2.4825 -0.6858 12 7 4.8681 -3.0537 1.5732 13 6 3.8191 -3.3179 2.5611 14 6 4.4314 -3.9407 3.7894 15 8 5.6263 -4.1435 3.8350 16 7 3.6511 -4.2714 4.8374 17 6 4.2081 -4.8375 5.9549 18 1 5.2720 -5.0188 5.9953 19 6 3.4037 -5.1789 7.0353 20 7 2.1090 -4.9587 6.9859 21 14 4.1624 -5.9509 8.5576 22 1 5.1653 -5.0211 9.1366 23 1 3.0993 -6.2181 9.5594 24 1 4.8260 -7.2267 8.1872 25 6 2.1982 -1.1972 0.0057 26 6 1.4446 -2.5022 0.0114 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 0.8900 0.5138 29 1 -0.3633 -0.8900 0.5138 30 1 1.6582 2.1325 -0.0004 31 1 4.5153 2.8166 1.0290 32 1 5.2866 2.3721 -0.5123 33 1 3.7452 3.2620 -0.5127 34 1 6.1412 -0.1482 1.0200 35 1 6.1425 -0.8066 -0.6337 36 1 6.1423 0.9548 -0.3771 37 1 5.8008 -3.0725 1.8391 38 1 3.3320 -2.3815 2.8330 39 1 3.0832 -4.0003 2.1361 40 1 2.6956 -4.1082 4.8013 41 1 1.5475 -5.1967 7.7402 42 1 1.2634 -2.8216 -1.0148 43 1 2.0335 -3.2595 0.5290 44 1 0.4921 -2.3695 0.5242 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352510794.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:40 Heat of formation + Delta-G solvation = -105.152260 kcal Electronic energy + Delta-G solvation = -28180.728098 eV Core-core repulsion = 24224.292777 eV Total energy + Delta-G solvation = -3956.435321 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.98348 -40.27593 -38.76320 -37.10538 -36.35046 -35.80389 -35.41715 -33.93951 -33.32842 -30.49509 -30.05212 -28.78231 -26.76883 -26.17466 -25.20110 -23.98890 -21.43936 -20.58518 -20.55100 -20.06825 -19.09005 -17.93981 -17.78847 -17.27866 -17.10041 -16.45338 -16.25698 -16.13037 -15.92109 -15.62573 -15.34760 -14.73334 -14.47478 -14.39152 -14.25225 -14.17180 -13.85602 -13.72606 -13.63789 -13.55249 -13.49783 -13.34086 -13.25160 -13.05780 -12.96732 -12.90920 -12.44799 -12.41422 -12.31698 -12.12237 -11.86693 -11.54764 -11.51626 -11.30838 -10.72615 -10.44709 -10.09788 -10.06326 -9.28572 -8.48877 -5.98268 -0.71831 -0.19632 0.27373 1.39234 1.43755 1.53879 1.87099 1.94297 2.29367 2.37004 2.68800 3.05079 3.18021 3.29844 3.70173 3.72842 3.85039 3.96225 4.06551 4.19531 4.28458 4.32359 4.38405 4.46772 4.58910 4.65141 4.67656 4.72437 4.76441 4.78224 4.83708 4.91953 5.05752 5.12247 5.16222 5.22999 5.32598 5.40318 5.50023 5.51212 5.56484 5.87504 5.96433 5.99431 6.52600 7.07151 7.47489 8.00106 8.67695 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013581 B = 0.003259 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.279590 B = 8589.888017 C = 9062.198236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.121 4.121 3 C -0.058 4.058 4 C -0.124 4.124 5 C -0.116 4.116 6 C 0.006 3.994 7 C -0.195 4.195 8 C -0.687 4.687 9 S 2.708 3.292 10 O -0.971 6.971 11 O -0.974 6.974 12 N -1.101 6.101 13 C 0.116 3.884 14 C 0.434 3.566 15 O -0.624 6.624 16 N -0.560 5.560 17 C -0.339 4.339 18 H 0.083 0.917 19 C -0.007 4.007 20 N -0.914 5.914 21 Si 0.993 3.007 22 H -0.271 1.271 23 H -0.270 1.270 24 H -0.273 1.273 25 C 0.005 3.995 26 C -0.159 4.159 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.157 0.843 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.117 0.883 36 H 0.101 0.899 37 H 0.424 0.576 38 H 0.107 0.893 39 H 0.112 0.888 40 H 0.400 0.600 41 H 0.280 0.720 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.939 15.259 -14.336 21.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.122 4.122 3 C -0.076 4.076 4 C -0.125 4.125 5 C -0.172 4.172 6 C 0.005 3.995 7 C -0.251 4.251 8 C -0.777 4.777 9 S 2.802 3.198 10 O -0.961 6.961 11 O -0.964 6.964 12 N -0.863 5.863 13 C -0.014 4.014 14 C 0.220 3.780 15 O -0.511 6.511 16 N -0.197 5.197 17 C -0.468 4.468 18 H 0.101 0.899 19 C -0.208 4.208 20 N -0.554 5.554 21 Si 0.816 3.184 22 H -0.196 1.196 23 H -0.195 1.195 24 H -0.198 1.198 25 C 0.003 3.997 26 C -0.215 4.215 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.175 0.825 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.100 0.900 35 H 0.135 0.865 36 H 0.120 0.880 37 H 0.262 0.738 38 H 0.125 0.875 39 H 0.130 0.870 40 H 0.235 0.765 41 H 0.089 0.911 42 H 0.108 0.892 43 H 0.105 0.895 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.301 14.527 -14.918 21.262 hybrid contribution 0.035 0.110 1.220 1.225 sum -4.266 14.637 -13.698 20.496 Atomic orbital electron populations 1.20933 0.88600 1.04239 1.03499 1.20206 0.97949 0.92057 1.02024 1.21574 0.93442 0.98727 0.93829 1.20213 0.94492 0.95589 1.02228 1.20929 1.00468 0.92441 1.03363 1.19621 0.96421 0.91549 0.91920 1.22074 0.90140 1.07825 1.05078 1.30161 1.05864 1.18634 1.23029 1.01133 0.72829 0.74160 0.71630 1.93555 1.63544 1.58053 1.80958 1.93388 1.45651 1.85640 1.71716 1.55114 1.16539 1.87336 1.27340 1.20943 0.89966 1.02249 0.88218 1.20472 0.87311 0.84433 0.85767 1.90480 1.16809 1.60943 1.82874 1.41833 1.10364 1.53820 1.13640 1.19675 0.94783 1.38725 0.93653 0.89927 1.26033 0.95657 0.97389 1.01702 1.69655 1.04564 1.47404 1.33739 0.84994 0.77862 0.78572 0.76960 1.19628 1.19463 1.19777 1.19696 0.90901 0.97089 0.92030 1.21696 1.01802 0.93093 1.04958 0.89945 0.89922 0.90363 0.82526 0.90357 0.90346 0.89676 0.89960 0.86535 0.88004 0.73802 0.87518 0.87011 0.76498 0.91072 0.89247 0.89464 0.88494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.59 9.61 71.24 0.68 -0.90 16 2 C -0.12 -2.42 5.88 -19.86 -0.12 -2.53 16 3 C -0.06 -1.04 9.36 22.27 0.21 -0.83 16 4 C -0.12 -2.50 5.88 -19.87 -0.12 -2.61 16 5 C -0.12 -1.58 9.58 71.24 0.68 -0.90 16 6 C 0.01 0.16 5.87 -19.87 -0.12 0.04 16 7 C -0.19 -4.49 8.97 71.24 0.64 -3.85 16 8 C -0.69 -18.38 5.94 22.27 0.13 -18.25 16 9 S 2.71 81.65 5.18 -56.49 -0.29 81.35 16 10 O -0.97 -31.97 13.40 -128.00 -1.72 -33.69 16 11 O -0.97 -31.98 14.24 -128.00 -1.82 -33.80 16 12 N -1.10 -35.60 5.93 -190.79 -1.13 -36.73 16 13 C 0.12 3.92 6.31 85.64 0.54 4.46 16 14 C 0.43 19.90 7.85 87.66 0.69 20.58 16 15 O -0.62 -32.96 15.30 -3.06 -0.05 -33.01 16 16 N -0.56 -27.59 5.29 -306.98 -1.62 -29.21 16 17 C -0.34 -18.59 9.68 84.04 0.81 -17.77 16 18 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 19 C -0.01 -0.36 5.50 84.93 0.47 0.11 16 20 N -0.91 -47.43 13.05 21.66 0.28 -47.14 16 21 Si 0.99 41.56 29.55 68.60 2.03 43.58 16 22 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 23 H -0.27 -10.65 7.11 99.48 0.71 -9.95 16 24 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 25 C 0.00 0.11 5.88 -19.87 -0.12 -0.01 16 26 C -0.16 -3.66 8.08 71.23 0.58 -3.09 16 27 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.08 0.86 8.09 -2.39 -0.02 0.84 16 29 H 0.08 1.04 5.94 -2.39 -0.01 1.02 16 30 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16 31 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 32 H 0.08 0.99 5.88 -2.39 -0.01 0.98 16 33 H 0.08 0.83 8.09 -2.39 -0.02 0.81 16 34 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 35 H 0.12 3.12 4.55 -18.74 -0.09 3.04 16 36 H 0.10 1.78 5.66 -2.39 -0.01 1.77 16 37 H 0.42 14.42 7.70 -96.74 -0.75 13.68 16 38 H 0.11 3.02 8.14 -2.39 -0.02 3.00 16 39 H 0.11 3.39 6.70 -2.39 -0.02 3.38 16 40 H 0.40 18.46 7.90 -92.71 -0.73 17.73 16 41 H 0.28 13.62 8.31 -92.71 -0.77 12.85 16 42 H 0.09 2.00 8.12 -2.39 -0.02 1.98 16 43 H 0.09 2.28 3.74 -2.40 -0.01 2.27 16 44 H 0.10 1.73 5.94 -2.39 -0.01 1.72 16 Total: -1.00 -70.12 362.04 0.17 -69.95 By element: Atomic # 1 Polarization: 44.71 SS G_CDS: -0.47 Total: 44.24 kcal Atomic # 6 Polarization: -30.51 SS G_CDS: 4.96 Total: -25.55 kcal Atomic # 7 Polarization: -110.61 SS G_CDS: -2.47 Total: -113.08 kcal Atomic # 8 Polarization: -96.91 SS G_CDS: -3.58 Total: -100.49 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.58 kcal Atomic # 16 Polarization: 81.65 SS G_CDS: -0.29 Total: 81.35 kcal Total: -70.12 0.17 -69.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352510794.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.198 kcal (2) G-P(sol) polarization free energy of solvation -70.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds