Wall clock time and date at job start Sat Apr 11 2020 05:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38251 * 120.00020 * 2 1 4 4 C 1.38216 * 120.00452 * 179.97438 * 3 2 1 5 5 C 1.38256 * 119.99493 * 359.97438 * 4 3 2 6 6 S 1.76197 * 120.00083 * 180.02562 * 5 4 3 7 7 O 1.42100 * 106.40404 * 203.54089 * 6 5 4 8 8 O 1.42107 * 106.40239 * 336.45686 * 6 5 4 9 9 N 1.65594 * 107.21836 * 89.99654 * 6 5 4 10 10 C 1.46507 * 120.00140 * 65.00715 * 9 6 5 11 11 C 1.50697 * 109.47102 * 164.99953 * 10 9 6 12 12 O 1.21275 * 120.00289 * 359.97438 * 11 10 9 13 13 N 1.34782 * 119.99585 * 179.97438 * 11 10 9 14 14 C 1.46495 * 119.99897 * 179.97438 * 13 11 10 15 15 C 1.53003 * 109.47189 * 179.97438 * 14 13 11 16 16 C 1.50698 * 109.47066 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00201 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99940 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00001 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00251 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47079 * 59.99648 * 20 18 16 22 22 H 1.48501 * 109.47450 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47069 * 299.99970 * 20 18 16 24 24 C 1.38214 * 120.00052 * 0.02562 * 5 4 3 25 25 C 1.38218 * 119.99968 * 179.72146 * 2 1 3 26 26 C 1.50695 * 119.99818 * 0.02562 * 25 2 1 27 27 H 1.09002 * 109.47152 * 90.00315 * 1 2 3 28 28 H 1.09001 * 109.46980 * 330.00416 * 1 2 3 29 29 H 1.09004 * 109.47113 * 210.00397 * 1 2 3 30 30 H 1.08009 * 120.00152 * 359.97438 * 3 2 1 31 31 H 1.07994 * 120.00533 * 180.02562 * 4 3 2 32 32 H 0.97006 * 120.00294 * 244.99787 * 9 6 5 33 33 H 1.09003 * 109.46234 * 284.99704 * 10 9 6 34 34 H 1.08994 * 109.46899 * 44.99186 * 10 9 6 35 35 H 0.97002 * 119.99892 * 0.02562 * 13 11 10 36 36 H 1.08998 * 109.47599 * 300.00212 * 14 13 11 37 37 H 1.09003 * 109.47151 * 60.00316 * 14 13 11 38 38 H 1.08998 * 109.47128 * 300.00628 * 15 14 13 39 39 H 1.09003 * 109.46712 * 60.00175 * 15 14 13 40 40 H 0.97000 * 120.00177 * 180.02562 * 19 18 16 41 41 H 1.08000 * 120.00080 * 180.02562 * 24 5 4 42 42 H 1.08995 * 109.47734 * 90.00064 * 26 25 2 43 43 H 1.09002 * 109.46829 * 210.00009 * 26 25 2 44 44 H 1.09000 * 109.47496 * 329.99322 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0016 6 16 6.0337 0.0000 0.0030 7 8 6.4354 -1.2500 -0.5406 8 8 6.4354 1.2495 -0.5418 9 7 6.5226 0.0008 1.5851 10 6 6.2267 -1.1487 2.4439 11 6 7.0717 -1.0758 3.6895 12 8 7.8452 -0.1547 3.8446 13 7 6.9677 -2.0343 4.6314 14 6 7.7894 -1.9638 5.8421 15 6 7.4794 -3.1636 6.7395 16 6 8.3243 -3.0907 7.9853 17 1 9.0132 -2.2705 8.1233 18 6 8.2178 -4.0711 8.9488 19 7 7.3793 -5.0702 8.7804 20 14 9.2645 -3.9805 10.4933 21 1 8.9602 -2.7243 11.2245 22 1 8.9637 -5.1450 11.3643 23 1 10.7015 -3.9997 10.1192 24 6 3.5806 -1.1969 0.0016 25 6 2.1981 -1.1970 0.0058 26 6 1.4446 -2.5020 0.0116 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 0.8900 0.5138 29 1 -0.3633 -0.8900 0.5139 30 1 1.6583 2.1327 -0.0004 31 1 4.1204 2.1326 0.0010 32 1 7.0051 0.7623 1.9433 33 1 5.1721 -1.1347 2.7188 34 1 6.4500 -2.0705 1.9067 35 1 6.3492 -2.7713 4.5071 36 1 8.8440 -1.9784 5.5669 37 1 7.5668 -1.0418 6.3791 38 1 6.4248 -3.1486 7.0147 39 1 7.7017 -4.0859 6.2027 40 1 7.3041 -5.7598 9.4585 41 1 4.1206 -2.1322 0.0029 42 1 1.2633 -2.8215 -1.0146 43 1 2.0335 -3.2593 0.5292 44 1 0.4920 -2.3694 0.5245 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355559691.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:01 Heat of formation + Delta-G solvation = -103.177606 kcal Electronic energy + Delta-G solvation = -26467.092696 eV Core-core repulsion = 22510.743003 eV Total energy + Delta-G solvation = -3956.349693 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.02653 -39.50361 -37.45495 -36.07157 -35.34439 -34.58124 -33.99553 -32.92463 -32.67288 -30.01448 -28.24877 -27.22292 -27.06795 -24.47005 -22.76478 -21.92966 -21.14398 -20.43723 -19.61767 -18.24126 -17.78526 -16.85649 -16.54612 -16.36438 -15.96508 -15.80080 -15.47944 -15.10568 -14.79268 -14.62582 -14.53835 -14.21722 -13.88750 -13.64438 -13.28097 -13.18855 -13.16789 -12.69909 -12.61801 -12.47844 -12.37493 -12.30576 -12.23218 -12.19503 -12.15515 -11.51805 -11.27583 -11.06405 -11.02033 -10.70433 -10.39701 -10.03890 -9.84936 -9.55673 -9.50272 -9.29174 -9.18035 -8.65551 -8.42913 -6.13519 -4.16656 0.08588 0.44577 0.88039 2.65148 2.77194 3.06706 3.28668 3.32709 3.35215 3.52159 3.54218 4.03631 4.27869 4.35342 4.38039 4.43574 4.65883 4.71397 4.78840 4.96087 5.01811 5.03480 5.09568 5.15904 5.21489 5.23689 5.32574 5.36870 5.43961 5.55582 5.67995 5.68806 5.81903 6.07382 6.24234 6.26642 6.44910 6.64600 6.72987 6.80943 7.44854 7.55201 7.82244 7.85542 8.21211 8.44420 8.88923 9.48485 10.97982 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014163 B = 0.002241 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.546332 B =12493.362155 C =13706.150255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.032 4.032 3 C -0.139 4.139 4 C -0.020 4.020 5 C -0.679 4.679 6 S 2.701 3.299 7 O -0.955 6.955 8 O -0.956 6.956 9 N -1.103 6.103 10 C 0.095 3.905 11 C 0.505 3.495 12 O -0.542 6.542 13 N -0.717 5.717 14 C 0.121 3.879 15 C 0.013 3.987 16 C -0.524 4.524 17 H 0.059 0.941 18 C 0.060 3.940 19 N -0.894 5.894 20 Si 0.898 3.102 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.275 1.275 24 C -0.019 4.019 25 C -0.108 4.108 26 C -0.120 4.120 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.132 0.868 31 H 0.141 0.859 32 H 0.429 0.571 33 H 0.094 0.906 34 H 0.110 0.890 35 H 0.400 0.600 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.023 0.977 39 H 0.024 0.976 40 H 0.263 0.737 41 H 0.142 0.858 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.169 8.322 -20.396 27.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.032 4.032 3 C -0.158 4.158 4 C -0.039 4.039 5 C -0.766 4.766 6 S 2.791 3.209 7 O -0.945 6.945 8 O -0.946 6.946 9 N -0.867 5.867 10 C -0.035 4.035 11 C 0.288 3.712 12 O -0.420 6.420 13 N -0.367 5.367 14 C -0.001 4.001 15 C -0.025 4.025 16 C -0.562 4.562 17 H 0.077 0.923 18 C -0.142 4.142 19 N -0.533 5.533 20 Si 0.725 3.275 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.201 1.201 24 C -0.038 4.038 25 C -0.109 4.109 26 C -0.177 4.177 27 H 0.097 0.903 28 H 0.090 0.910 29 H 0.096 0.904 30 H 0.150 0.850 31 H 0.158 0.842 32 H 0.268 0.732 33 H 0.112 0.888 34 H 0.128 0.872 35 H 0.234 0.766 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.041 0.959 39 H 0.042 0.958 40 H 0.073 0.927 41 H 0.160 0.840 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.220 8.653 -20.956 27.307 hybrid contribution -0.320 -0.052 1.332 1.371 sum -15.540 8.602 -19.624 26.468 Atomic orbital electron populations 1.21020 0.90651 1.03672 1.03013 1.20136 0.96447 0.92786 0.93847 1.21171 0.94151 0.97940 1.02510 1.20904 0.94712 0.96596 0.91670 1.30928 1.27040 0.99549 1.19111 1.01677 0.73578 0.73696 0.71999 1.93594 1.80567 1.44236 1.76099 1.93601 1.81438 1.43748 1.75791 1.55239 1.72589 1.28257 1.30576 1.21123 1.00111 0.90195 0.92073 1.20256 0.83554 0.82939 0.84406 1.90675 1.38580 1.34220 1.78515 1.46280 1.43467 1.26035 1.20932 1.21790 0.93694 1.01517 0.83131 1.19328 0.97781 0.91622 0.93755 1.21000 1.23024 1.09100 1.03095 0.92284 1.24991 0.95484 0.95197 0.98566 1.69937 1.36216 1.11978 1.35148 0.86563 0.80767 0.77547 0.82606 1.20114 1.21229 1.20078 1.20852 0.94067 0.96669 0.92187 1.19910 0.93666 0.95448 1.01856 1.20907 1.00317 0.93609 1.02832 0.90324 0.90959 0.90416 0.85008 0.84160 0.73222 0.88784 0.87242 0.76570 0.92299 0.92355 0.95888 0.95817 0.92740 0.84019 0.90781 0.90855 0.90808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.60 9.61 36.01 0.35 -0.25 16 2 C -0.03 -0.24 5.88 -104.62 -0.62 -0.85 16 3 C -0.14 -1.07 9.70 -39.58 -0.38 -1.46 16 4 C -0.02 -0.18 9.52 -39.58 -0.38 -0.55 16 5 C -0.68 -6.58 5.95 -39.58 -0.24 -6.81 16 6 S 2.70 30.15 5.74 -107.50 -0.62 29.53 16 7 O -0.96 -12.77 16.75 -57.17 -0.96 -13.73 16 8 O -0.96 -12.95 17.28 -57.17 -0.99 -13.94 16 9 N -1.10 -12.15 5.93 -11.65 -0.07 -12.22 16 10 C 0.10 1.01 6.70 -5.19 -0.03 0.98 16 11 C 0.51 7.64 7.90 -10.98 -0.09 7.56 16 12 O -0.54 -10.17 15.73 5.56 0.09 -10.08 16 13 N -0.72 -11.27 5.56 -60.30 -0.33 -11.60 16 14 C 0.12 2.43 5.61 -4.04 -0.02 2.40 16 15 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 16 C -0.52 -14.16 9.11 -34.44 -0.31 -14.47 16 17 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -25.58 13.29 55.43 0.74 -24.84 16 20 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 22 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 C -0.02 -0.16 9.18 -39.58 -0.36 -0.53 16 25 C -0.11 -0.85 5.88 -104.63 -0.62 -1.47 16 26 C -0.12 -0.67 9.60 36.00 0.35 -0.32 16 27 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.28 8.09 -51.93 -0.42 -0.14 16 29 H 0.08 0.30 5.94 -51.93 -0.31 0.00 16 30 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 31 H 0.14 1.10 7.62 -52.49 -0.40 0.70 16 32 H 0.43 4.95 7.70 -34.47 -0.27 4.68 16 33 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.11 0.98 7.75 -51.93 -0.40 0.58 16 35 H 0.40 5.18 8.47 -40.82 -0.35 4.83 16 36 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 38 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 41 H 0.14 1.08 7.62 -52.49 -0.40 0.68 16 42 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 44 H 0.07 0.32 5.94 -51.93 -0.31 0.02 16 LS Contribution 384.65 15.07 5.80 5.80 Total: -1.00 -35.60 384.65 -10.16 -45.76 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -6.19 Total: 3.39 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: -2.60 Total: -14.07 kcal Atomic # 7 Polarization: -49.00 SS G_CDS: 0.33 Total: -48.67 kcal Atomic # 8 Polarization: -35.89 SS G_CDS: -1.86 Total: -37.75 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: 30.15 SS G_CDS: -0.62 Total: 29.53 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.60 -10.16 -45.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355559691.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.422 kcal (2) G-P(sol) polarization free energy of solvation -35.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds