Wall clock time and date at job start Sat Apr 11 2020 05:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38251 * 120.00020 * 2 1 4 4 C 1.38216 * 120.00452 * 179.97438 * 3 2 1 5 5 C 1.38256 * 119.99493 * 359.97438 * 4 3 2 6 6 S 1.76197 * 120.00083 * 180.02562 * 5 4 3 7 7 O 1.42100 * 106.40404 * 203.54089 * 6 5 4 8 8 O 1.42107 * 106.40239 * 336.45686 * 6 5 4 9 9 N 1.65594 * 107.21836 * 89.99654 * 6 5 4 10 10 C 1.46507 * 120.00140 * 65.00715 * 9 6 5 11 11 C 1.50697 * 109.47102 * 164.99953 * 10 9 6 12 12 O 1.21275 * 120.00289 * 359.97438 * 11 10 9 13 13 N 1.34782 * 119.99585 * 179.97438 * 11 10 9 14 14 C 1.46495 * 119.99897 * 179.97438 * 13 11 10 15 15 C 1.53003 * 109.47189 * 179.97438 * 14 13 11 16 16 C 1.50698 * 109.47066 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00201 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99940 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00001 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00251 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47079 * 59.99648 * 20 18 16 22 22 H 1.48501 * 109.47450 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47069 * 299.99970 * 20 18 16 24 24 C 1.38214 * 120.00052 * 0.02562 * 5 4 3 25 25 C 1.38218 * 119.99968 * 179.72146 * 2 1 3 26 26 C 1.50695 * 119.99818 * 0.02562 * 25 2 1 27 27 H 1.09002 * 109.47152 * 90.00315 * 1 2 3 28 28 H 1.09001 * 109.46980 * 330.00416 * 1 2 3 29 29 H 1.09004 * 109.47113 * 210.00397 * 1 2 3 30 30 H 1.08009 * 120.00152 * 359.97438 * 3 2 1 31 31 H 1.07994 * 120.00533 * 180.02562 * 4 3 2 32 32 H 0.97006 * 120.00294 * 244.99787 * 9 6 5 33 33 H 1.09003 * 109.46234 * 284.99704 * 10 9 6 34 34 H 1.08994 * 109.46899 * 44.99186 * 10 9 6 35 35 H 0.97002 * 119.99892 * 0.02562 * 13 11 10 36 36 H 1.08998 * 109.47599 * 300.00212 * 14 13 11 37 37 H 1.09003 * 109.47151 * 60.00316 * 14 13 11 38 38 H 1.08998 * 109.47128 * 300.00628 * 15 14 13 39 39 H 1.09003 * 109.46712 * 60.00175 * 15 14 13 40 40 H 0.97000 * 120.00177 * 180.02562 * 19 18 16 41 41 H 1.08000 * 120.00080 * 180.02562 * 24 5 4 42 42 H 1.08995 * 109.47734 * 90.00064 * 26 25 2 43 43 H 1.09002 * 109.46829 * 210.00009 * 26 25 2 44 44 H 1.09000 * 109.47496 * 329.99322 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0016 6 16 6.0337 0.0000 0.0030 7 8 6.4354 -1.2500 -0.5406 8 8 6.4354 1.2495 -0.5418 9 7 6.5226 0.0008 1.5851 10 6 6.2267 -1.1487 2.4439 11 6 7.0717 -1.0758 3.6895 12 8 7.8452 -0.1547 3.8446 13 7 6.9677 -2.0343 4.6314 14 6 7.7894 -1.9638 5.8421 15 6 7.4794 -3.1636 6.7395 16 6 8.3243 -3.0907 7.9853 17 1 9.0132 -2.2705 8.1233 18 6 8.2178 -4.0711 8.9488 19 7 7.3793 -5.0702 8.7804 20 14 9.2645 -3.9805 10.4933 21 1 8.9602 -2.7243 11.2245 22 1 8.9637 -5.1450 11.3643 23 1 10.7015 -3.9997 10.1192 24 6 3.5806 -1.1969 0.0016 25 6 2.1981 -1.1970 0.0058 26 6 1.4446 -2.5020 0.0116 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 0.8900 0.5138 29 1 -0.3633 -0.8900 0.5139 30 1 1.6583 2.1327 -0.0004 31 1 4.1204 2.1326 0.0010 32 1 7.0051 0.7623 1.9433 33 1 5.1721 -1.1347 2.7188 34 1 6.4500 -2.0705 1.9067 35 1 6.3492 -2.7713 4.5071 36 1 8.8440 -1.9784 5.5669 37 1 7.5668 -1.0418 6.3791 38 1 6.4248 -3.1486 7.0147 39 1 7.7017 -4.0859 6.2027 40 1 7.3041 -5.7598 9.4585 41 1 4.1206 -2.1322 0.0029 42 1 1.2633 -2.8215 -1.0146 43 1 2.0335 -3.2593 0.5292 44 1 0.4920 -2.3694 0.5245 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355559691.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:00 Heat of formation + Delta-G solvation = -129.629090 kcal Electronic energy + Delta-G solvation = -26468.239718 eV Core-core repulsion = 22510.743003 eV Total energy + Delta-G solvation = -3957.496716 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.79870 -40.58879 -38.43297 -37.05288 -36.78113 -35.70980 -34.83014 -34.54382 -33.20349 -31.75568 -28.73188 -28.47302 -27.57427 -26.23595 -23.32776 -22.93361 -22.55279 -21.70978 -20.47261 -19.20538 -18.62358 -18.49139 -17.80124 -17.31976 -16.96736 -16.81282 -16.47576 -16.32864 -16.15863 -15.43532 -15.36207 -15.24410 -15.15062 -14.43288 -14.29430 -14.20564 -13.98443 -13.61594 -13.59779 -13.32857 -13.27683 -13.23140 -13.18978 -13.16323 -13.01483 -12.91205 -12.62325 -12.54264 -12.21649 -12.03981 -11.70594 -11.68125 -11.47237 -11.01775 -10.67498 -10.58728 -10.08980 -10.03535 -9.76152 -8.23170 -6.33043 -0.76046 -0.22396 0.28337 1.42874 1.44415 1.52358 1.55283 1.79724 2.25286 2.41852 2.47277 2.71259 3.11913 3.23869 3.59534 3.74713 3.83030 3.90450 4.18874 4.21173 4.23504 4.29338 4.41810 4.49408 4.52411 4.61559 4.67783 4.71711 4.78890 4.88193 4.91207 4.93371 5.06644 5.14594 5.20523 5.26675 5.34500 5.49435 5.55293 5.61152 5.80205 5.85026 5.90101 6.17660 6.57909 6.80215 7.20253 7.36166 8.88272 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014163 B = 0.002241 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.546332 B =12493.362155 C =13706.150255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.035 4.035 3 C -0.144 4.144 4 C -0.036 4.036 5 C -0.684 4.684 6 S 2.719 3.281 7 O -0.980 6.980 8 O -0.984 6.984 9 N -1.106 6.106 10 C 0.099 3.901 11 C 0.506 3.494 12 O -0.580 6.580 13 N -0.712 5.712 14 C 0.140 3.860 15 C 0.022 3.978 16 C -0.548 4.548 17 H 0.058 0.942 18 C 0.008 3.992 19 N -0.925 5.925 20 Si 0.962 3.038 21 H -0.269 1.269 22 H -0.281 1.281 23 H -0.270 1.270 24 C -0.032 4.032 25 C -0.115 4.115 26 C -0.122 4.122 27 H 0.089 0.911 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.154 0.846 31 H 0.144 0.856 32 H 0.427 0.573 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.416 0.584 36 H 0.046 0.954 37 H 0.049 0.951 38 H 0.012 0.988 39 H 0.010 0.990 40 H 0.266 0.734 41 H 0.151 0.849 42 H 0.081 0.919 43 H 0.076 0.924 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.907 8.261 -20.577 28.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.035 4.035 3 C -0.163 4.163 4 C -0.055 4.055 5 C -0.774 4.774 6 S 2.812 3.188 7 O -0.970 6.970 8 O -0.975 6.975 9 N -0.869 5.869 10 C -0.030 4.030 11 C 0.291 3.709 12 O -0.461 6.461 13 N -0.363 5.363 14 C 0.016 3.984 15 C -0.015 4.015 16 C -0.586 4.586 17 H 0.076 0.924 18 C -0.191 4.191 19 N -0.565 5.565 20 Si 0.786 3.214 21 H -0.194 1.194 22 H -0.206 1.206 23 H -0.195 1.195 24 C -0.051 4.051 25 C -0.116 4.116 26 C -0.178 4.178 27 H 0.107 0.893 28 H 0.100 0.900 29 H 0.105 0.895 30 H 0.171 0.829 31 H 0.162 0.838 32 H 0.265 0.735 33 H 0.149 0.851 34 H 0.149 0.851 35 H 0.252 0.748 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.030 0.970 39 H 0.029 0.971 40 H 0.075 0.925 41 H 0.168 0.832 42 H 0.100 0.900 43 H 0.095 0.905 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -16.946 8.580 -21.159 28.434 hybrid contribution 0.123 -0.021 1.343 1.349 sum -16.823 8.559 -19.816 27.367 Atomic orbital electron populations 1.21098 0.88612 1.04653 1.03940 1.20536 0.98030 0.92463 0.92503 1.21486 0.93723 0.99238 1.01863 1.21108 0.95625 0.96572 0.92241 1.30548 1.25304 1.00433 1.21066 1.00858 0.74019 0.72449 0.71480 1.93553 1.81670 1.45076 1.76711 1.93555 1.82539 1.44892 1.76482 1.55188 1.72992 1.28291 1.30408 1.21287 1.01010 0.90921 0.89814 1.20948 0.83159 0.81678 0.85099 1.90662 1.40308 1.35642 1.79447 1.46045 1.43333 1.27061 1.19883 1.21252 0.93662 0.99311 0.84203 1.19139 0.96524 0.92464 0.93421 1.21451 1.23479 1.09166 1.04526 0.92403 1.25828 0.96666 0.94844 1.01717 1.70036 1.37538 1.12633 1.36274 0.85548 0.79164 0.77815 0.78824 1.19384 1.20646 1.19501 1.21078 0.94863 0.96664 0.92542 1.20237 0.93444 0.96745 1.01221 1.20984 1.00710 0.92507 1.03574 0.89257 0.90014 0.89460 0.82866 0.83812 0.73510 0.85131 0.85112 0.74768 0.93530 0.93267 0.96967 0.97137 0.92544 0.83158 0.90043 0.90459 0.89472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.81 9.61 71.24 0.68 -0.12 16 2 C -0.03 -0.43 5.88 -19.87 -0.12 -0.55 16 3 C -0.14 -1.96 9.70 22.27 0.22 -1.74 16 4 C -0.04 -0.61 9.52 22.27 0.21 -0.40 16 5 C -0.68 -12.60 5.95 22.27 0.13 -12.47 16 6 S 2.72 59.99 5.74 -56.49 -0.32 59.67 16 7 O -0.98 -25.85 16.75 -128.00 -2.14 -27.99 16 8 O -0.98 -27.08 17.28 -128.00 -2.21 -29.29 16 9 N -1.11 -23.68 5.93 -190.78 -1.13 -24.81 16 10 C 0.10 1.93 6.70 85.63 0.57 2.51 16 11 C 0.51 14.88 7.90 87.66 0.69 15.57 16 12 O -0.58 -21.80 15.73 -3.01 -0.05 -21.85 16 13 N -0.71 -21.86 5.56 -463.07 -2.57 -24.44 16 14 C 0.14 5.64 5.61 86.38 0.48 6.13 16 15 C 0.02 1.06 5.09 29.85 0.15 1.21 16 16 C -0.55 -29.83 9.11 25.60 0.23 -29.60 16 17 H 0.06 3.08 7.74 -2.91 -0.02 3.06 16 18 C 0.01 0.46 5.46 84.65 0.46 0.92 16 19 N -0.93 -53.07 13.29 21.45 0.28 -52.79 16 20 Si 0.96 42.89 29.54 68.60 2.03 44.91 16 21 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 22 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 23 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 24 C -0.03 -0.52 9.18 22.27 0.20 -0.32 16 25 C -0.12 -1.57 5.88 -19.87 -0.12 -1.69 16 26 C -0.12 -1.04 9.60 71.23 0.68 -0.35 16 27 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.08 0.39 8.09 -2.39 -0.02 0.37 16 29 H 0.09 0.40 5.94 -2.38 -0.01 0.39 16 30 H 0.15 1.30 8.06 -2.91 -0.02 1.27 16 31 H 0.14 2.21 7.62 -2.91 -0.02 2.19 16 32 H 0.43 9.87 7.70 -96.74 -0.75 9.12 16 33 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.13 2.06 7.75 -2.39 -0.02 2.04 16 35 H 0.42 10.22 8.47 -92.71 -0.79 9.44 16 36 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 41 H 0.15 2.05 7.62 -2.91 -0.02 2.03 16 42 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.08 0.60 8.09 -2.39 -0.02 0.58 16 44 H 0.09 0.50 5.94 -2.39 -0.01 0.49 16 Total: -1.00 -76.50 384.65 -2.12 -78.62 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: -0.49 Total: 18.87 kcal Atomic # 6 Polarization: -25.40 SS G_CDS: 4.50 Total: -20.90 kcal Atomic # 7 Polarization: -98.61 SS G_CDS: -3.42 Total: -102.03 kcal Atomic # 8 Polarization: -74.73 SS G_CDS: -4.40 Total: -79.13 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.91 kcal Atomic # 16 Polarization: 59.99 SS G_CDS: -0.32 Total: 59.67 kcal Total: -76.50 -2.12 -78.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355559691.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.013 kcal (2) G-P(sol) polarization free energy of solvation -76.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds