Wall clock time and date at job start Sat Apr 11 2020 05:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38234 * 119.99848 * 2 1 4 4 C 1.38235 * 119.99509 * 180.02562 * 3 2 1 5 5 C 1.38229 * 120.00581 * 359.95667 * 4 3 2 6 6 S 1.76205 * 120.00426 * 180.02562 * 5 4 3 7 7 O 1.42099 * 106.39733 * 336.45490 * 6 5 4 8 8 O 1.42105 * 106.40075 * 203.53904 * 6 5 4 9 9 N 1.65595 * 107.21879 * 89.99604 * 6 5 4 10 10 C 1.46505 * 119.99708 * 65.00334 * 9 6 5 11 11 H 1.08990 * 109.47448 * 334.99763 * 10 9 6 12 12 C 1.53009 * 109.46892 * 94.99879 * 10 9 6 13 13 C 1.50696 * 109.46866 * 214.99600 * 10 9 6 14 14 O 1.21282 * 120.00128 * 0.02562 * 13 10 9 15 15 N 1.34774 * 119.99967 * 180.02562 * 13 10 9 16 16 C 1.46506 * 120.00251 * 180.02562 * 15 13 10 17 17 H 1.09001 * 109.47060 * 325.00368 * 16 15 13 18 18 C 1.53005 * 109.46831 * 84.99772 * 16 15 13 19 19 C 1.50703 * 109.47289 * 204.99918 * 16 15 13 20 20 H 1.07994 * 119.99399 * 0.02562 * 19 16 15 21 21 C 1.37874 * 119.99789 * 179.97438 * 19 16 15 22 22 N 1.31518 * 120.00144 * 0.02562 * 21 19 16 23 23 Si 1.86803 * 119.99733 * 179.97438 * 21 19 16 24 24 H 1.48490 * 109.47181 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.46716 * 120.00463 * 23 21 19 26 26 H 1.48500 * 109.46999 * 240.00161 * 23 21 19 27 27 C 1.38245 * 119.99834 * 0.27473 * 5 4 3 28 28 C 1.38235 * 119.99824 * 359.51716 * 27 5 4 29 29 H 1.09000 * 109.46779 * 89.99949 * 1 2 3 30 30 H 1.09003 * 109.47007 * 209.99496 * 1 2 3 31 31 H 1.08992 * 109.47301 * 330.00019 * 1 2 3 32 32 H 1.07993 * 120.00409 * 359.97438 * 3 2 1 33 33 H 1.08005 * 119.99819 * 179.97438 * 4 3 2 34 34 H 0.96996 * 119.99908 * 244.99821 * 9 6 5 35 35 H 1.08992 * 109.47176 * 299.99806 * 12 10 9 36 36 H 1.08994 * 109.46917 * 60.00164 * 12 10 9 37 37 H 1.08997 * 109.46495 * 179.97438 * 12 10 9 38 38 H 0.97006 * 120.00165 * 0.02562 * 15 13 10 39 39 H 1.09001 * 109.46812 * 60.00445 * 18 16 15 40 40 H 1.09002 * 109.46935 * 180.02562 * 18 16 15 41 41 H 1.08992 * 109.47061 * 300.00078 * 18 16 15 42 42 H 0.96997 * 119.99752 * 179.97438 * 22 21 19 43 43 H 1.07996 * 119.99862 * 179.72821 * 27 5 4 44 44 H 1.07996 * 120.00069 * 180.25182 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1971 -0.0005 5 6 4.2717 0.0000 -0.0002 6 16 6.0338 0.0000 -0.0002 7 8 6.4350 1.2495 -0.5451 8 8 6.4350 -1.2500 -0.5442 9 7 6.5240 0.0005 1.5816 10 6 6.2286 -1.1491 2.4403 11 1 5.3527 -1.6729 2.0578 12 6 7.4275 -2.0997 2.4500 13 6 5.9552 -0.6711 3.8431 14 8 6.0020 0.5133 4.1001 15 7 5.6588 -1.5597 4.8121 16 6 5.3924 -1.0950 6.1757 17 1 6.0247 -0.2349 6.3965 18 6 3.9217 -0.6916 6.2988 19 6 5.6928 -2.2032 7.1518 20 1 6.0471 -3.1579 6.7923 21 6 5.5163 -1.9977 8.5037 22 7 5.0854 -0.8348 8.9413 23 14 5.8880 -3.3716 9.7135 24 1 6.3548 -4.5708 8.9726 25 1 6.9473 -2.9287 10.6552 26 1 4.6578 -3.7072 10.4746 27 6 3.5805 -1.1972 -0.0050 28 6 2.1982 -1.1972 -0.0001 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3633 0.8899 0.5138 32 1 1.6583 2.1324 -0.0004 33 1 4.1206 2.1324 -0.0010 34 1 7.0067 0.7620 1.9394 35 1 7.6253 -2.4454 1.4355 36 1 8.3034 -1.5759 2.8327 37 1 7.2079 -2.9548 3.0893 38 1 5.6218 -2.5070 4.6066 39 1 3.2894 -1.5516 6.0780 40 1 3.7236 -0.3454 7.3132 41 1 3.7045 0.1099 5.5929 42 1 4.9608 -0.6904 9.8924 43 1 4.1205 -2.1325 -0.0091 44 1 1.6582 -2.1325 0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356411736.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:43 Heat of formation + Delta-G solvation = -120.795034 kcal Electronic energy + Delta-G solvation = -27833.555167 eV Core-core repulsion = 23876.441524 eV Total energy + Delta-G solvation = -3957.113642 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.85297 -40.30721 -38.42491 -37.08345 -37.01089 -36.22084 -34.35069 -34.00670 -32.07394 -31.63348 -29.99489 -28.23810 -27.32785 -25.45733 -23.91807 -22.93497 -22.82764 -21.15990 -20.69632 -19.53571 -18.98896 -18.42596 -17.69776 -17.14420 -16.96777 -16.57355 -16.37670 -16.12106 -15.76821 -15.49249 -15.24078 -14.82995 -14.76748 -14.54910 -14.48076 -14.10079 -13.73682 -13.47842 -13.34915 -13.26613 -13.21115 -13.14979 -13.13262 -12.97975 -12.86883 -12.82133 -12.71668 -12.61740 -12.26334 -12.13680 -12.09929 -11.89318 -11.07763 -11.00385 -10.61947 -10.45084 -10.10580 -10.06622 -9.75617 -8.15901 -6.32789 -0.72391 -0.22928 0.28629 1.46047 1.47996 1.59171 1.73303 1.79316 2.33605 2.42250 2.60979 2.73432 3.15431 3.23853 3.63671 3.76367 3.83877 3.89332 3.94099 4.07182 4.24183 4.32452 4.38176 4.64727 4.65721 4.76202 4.78010 4.87105 4.92941 4.97868 5.00090 5.05565 5.07246 5.11126 5.22117 5.29610 5.44943 5.46131 5.61822 5.70015 5.85363 5.86525 5.91845 6.11440 6.75427 6.93233 7.33867 7.52061 8.90450 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012925 B = 0.003263 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.906438 B = 8578.198053 C = 9791.190515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.034 4.034 3 C -0.153 4.153 4 C -0.033 4.033 5 C -0.698 4.698 6 S 2.718 3.282 7 O -0.986 6.986 8 O -0.966 6.966 9 N -1.097 6.097 10 C 0.141 3.859 11 H 0.130 0.870 12 C -0.167 4.167 13 C 0.496 3.504 14 O -0.587 6.587 15 N -0.698 5.698 16 C 0.270 3.730 17 H 0.000 1.000 18 C -0.133 4.133 19 C -0.543 4.543 20 H 0.077 0.923 21 C 0.015 3.985 22 N -0.918 5.918 23 Si 0.970 3.030 24 H -0.257 1.257 25 H -0.287 1.287 26 H -0.281 1.281 27 C -0.031 4.031 28 C -0.148 4.148 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.151 0.849 33 H 0.139 0.861 34 H 0.425 0.575 35 H 0.093 0.907 36 H 0.061 0.939 37 H 0.093 0.907 38 H 0.408 0.592 39 H 0.042 0.958 40 H 0.065 0.935 41 H 0.011 0.989 42 H 0.264 0.736 43 H 0.158 0.842 44 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.833 -3.591 -19.235 20.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.035 4.035 3 C -0.172 4.172 4 C -0.052 4.052 5 C -0.787 4.787 6 S 2.809 3.191 7 O -0.976 6.976 8 O -0.956 6.956 9 N -0.857 5.857 10 C 0.030 3.970 11 H 0.148 0.852 12 C -0.226 4.226 13 C 0.281 3.719 14 O -0.468 6.468 15 N -0.347 5.347 16 C 0.166 3.834 17 H 0.018 0.982 18 C -0.192 4.192 19 C -0.581 4.581 20 H 0.095 0.905 21 C -0.185 4.185 22 N -0.557 5.557 23 Si 0.795 3.205 24 H -0.181 1.181 25 H -0.213 1.213 26 H -0.206 1.206 27 C -0.051 4.051 28 C -0.167 4.167 29 H 0.112 0.888 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.168 0.832 33 H 0.157 0.843 34 H 0.262 0.738 35 H 0.112 0.888 36 H 0.081 0.919 37 H 0.112 0.888 38 H 0.244 0.756 39 H 0.061 0.939 40 H 0.083 0.917 41 H 0.030 0.970 42 H 0.073 0.927 43 H 0.175 0.825 44 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -6.386 -2.826 -19.668 20.871 hybrid contribution -0.247 0.030 1.428 1.450 sum -6.633 -2.796 -18.240 19.609 Atomic orbital electron populations 1.21021 0.88389 1.04449 1.04048 1.20730 0.98243 0.93042 0.91458 1.21509 0.93782 0.99512 1.02399 1.21121 0.95772 0.96731 0.91586 1.30748 1.26269 1.00551 1.21111 1.01021 0.73724 0.72730 0.71589 1.93547 1.82430 1.44948 1.76706 1.93559 1.81285 1.44309 1.76476 1.55318 1.72088 1.28316 1.29991 1.20751 1.01771 0.86900 0.87583 0.85233 1.22329 0.96285 0.98741 1.05234 1.21162 0.76488 0.86321 0.87932 1.90640 1.54194 1.18465 1.83461 1.46220 1.68415 1.10371 1.09713 1.18368 0.92457 0.94533 0.77994 0.98182 1.21892 0.98235 0.98013 1.01065 1.21585 1.45535 0.99377 0.91606 0.90479 1.25770 0.94486 0.98038 1.00227 1.70061 1.46113 1.24458 1.15050 0.85324 0.77567 0.79195 0.78411 1.18116 1.21292 1.20645 1.21273 0.95705 0.96600 0.91478 1.21578 0.93937 0.99332 1.01812 0.88837 0.89819 0.90341 0.83168 0.84277 0.73805 0.88830 0.91939 0.88817 0.75623 0.93904 0.91670 0.97039 0.92671 0.82466 0.82289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.33 10.01 71.24 0.71 -0.61 16 2 C -0.03 -0.60 5.88 -19.86 -0.12 -0.71 16 3 C -0.15 -3.02 9.70 22.27 0.22 -2.80 16 4 C -0.03 -0.77 9.52 22.27 0.21 -0.56 16 5 C -0.70 -16.49 5.82 22.27 0.13 -16.37 16 6 S 2.72 68.66 5.65 -56.49 -0.32 68.35 16 7 O -0.99 -30.15 17.28 -128.00 -2.21 -32.36 16 8 O -0.97 -25.78 16.54 -128.00 -2.12 -27.90 16 9 N -1.10 -28.50 5.26 -172.51 -0.91 -29.41 16 10 C 0.14 3.62 3.18 44.25 0.14 3.76 16 11 H 0.13 2.57 7.25 -2.39 -0.02 2.56 16 12 C -0.17 -3.60 9.41 71.99 0.68 -2.92 16 13 C 0.50 18.05 7.18 87.66 0.63 18.68 16 14 O -0.59 -26.61 15.65 -3.04 -0.05 -26.66 16 15 N -0.70 -26.39 4.96 -446.08 -2.21 -28.60 16 16 C 0.27 13.30 2.56 44.25 0.11 13.42 16 17 H 0.00 0.02 7.58 -2.39 -0.02 0.00 16 18 C -0.13 -6.47 9.26 71.98 0.67 -5.80 16 19 C -0.54 -27.32 8.73 25.60 0.22 -27.10 16 20 H 0.08 3.58 7.74 -2.91 -0.02 3.55 16 21 C 0.01 0.76 5.30 84.65 0.45 1.21 16 22 N -0.92 -51.36 11.32 21.45 0.24 -51.11 16 23 Si 0.97 40.61 29.54 68.60 2.03 42.64 16 24 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 25 H -0.29 -12.12 7.11 99.48 0.71 -11.41 16 26 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 27 C -0.03 -0.63 8.92 22.27 0.20 -0.43 16 28 C -0.15 -2.56 9.70 22.27 0.22 -2.34 16 29 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.08 0.76 8.09 -2.39 -0.02 0.74 16 31 H 0.08 0.78 8.08 -2.39 -0.02 0.76 16 32 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 33 H 0.14 3.12 7.62 -2.91 -0.02 3.10 16 34 H 0.43 11.55 8.21 -96.75 -0.79 10.75 16 35 H 0.09 1.80 7.64 -2.39 -0.02 1.78 16 36 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.09 1.70 7.56 -2.39 -0.02 1.69 16 38 H 0.41 12.43 7.96 -92.70 -0.74 11.69 16 39 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.06 3.51 6.07 -2.39 -0.01 3.50 16 41 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 42 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16 43 H 0.16 2.48 7.61 -2.91 -0.02 2.46 16 44 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 Total: -1.00 -73.40 381.11 -1.58 -74.98 By element: Atomic # 1 Polarization: 33.15 SS G_CDS: -0.50 Total: 32.65 kcal Atomic # 6 Polarization: -27.04 SS G_CDS: 4.47 Total: -22.57 kcal Atomic # 7 Polarization: -106.25 SS G_CDS: -2.88 Total: -109.13 kcal Atomic # 8 Polarization: -82.54 SS G_CDS: -4.38 Total: -86.92 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.64 kcal Atomic # 16 Polarization: 68.66 SS G_CDS: -0.32 Total: 68.35 kcal Total: -73.40 -1.58 -74.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356411736.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.818 kcal (2) G-P(sol) polarization free energy of solvation -73.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds