Wall clock time and date at job start Sat Apr 11 2020 05:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38233 * 120.00207 * 2 1 4 4 C 1.38234 * 120.00037 * 179.72405 * 3 2 1 5 5 C 1.38234 * 120.00240 * 0.26327 * 4 3 2 6 6 S 1.76203 * 120.00235 * 179.97438 * 5 4 3 7 7 O 1.42098 * 106.39893 * 203.54139 * 6 5 4 8 8 O 1.42101 * 106.40216 * 336.45887 * 6 5 4 9 9 N 1.65603 * 107.21747 * 90.00062 * 6 5 4 10 10 C 1.46504 * 119.99915 * 64.99824 * 9 6 5 11 11 H 1.08995 * 109.47125 * 25.00444 * 10 9 6 12 12 C 1.52999 * 109.47093 * 264.99981 * 10 9 6 13 13 C 1.50701 * 109.46890 * 145.00175 * 10 9 6 14 14 O 1.21281 * 119.99661 * 359.97438 * 13 10 9 15 15 N 1.34777 * 120.00085 * 180.02562 * 13 10 9 16 16 C 1.46501 * 119.99785 * 179.97438 * 15 13 10 17 17 H 1.09001 * 109.47028 * 35.00160 * 16 15 13 18 18 C 1.52993 * 109.47061 * 274.99985 * 16 15 13 19 19 C 1.50706 * 109.46572 * 154.99898 * 16 15 13 20 20 H 1.07994 * 120.00229 * 0.02562 * 19 16 15 21 21 C 1.37869 * 119.99590 * 180.02562 * 19 16 15 22 22 N 1.31519 * 120.00693 * 0.02562 * 21 19 16 23 23 Si 1.86807 * 119.99911 * 180.02562 * 21 19 16 24 24 H 1.48500 * 109.46799 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.46999 * 120.00044 * 23 21 19 26 26 H 1.48498 * 109.47082 * 240.00124 * 23 21 19 27 27 C 1.38238 * 119.99693 * 0.02562 * 5 4 3 28 28 C 1.38234 * 120.00063 * 359.97438 * 27 5 4 29 29 H 1.09000 * 109.47363 * 89.99511 * 1 2 3 30 30 H 1.09000 * 109.47097 * 209.99342 * 1 2 3 31 31 H 1.09001 * 109.47081 * 329.99847 * 1 2 3 32 32 H 1.08002 * 120.00157 * 0.02562 * 3 2 1 33 33 H 1.07999 * 120.00009 * 180.28389 * 4 3 2 34 34 H 0.97001 * 119.99498 * 245.00002 * 9 6 5 35 35 H 1.09002 * 109.47283 * 60.00099 * 12 10 9 36 36 H 1.08999 * 109.46927 * 180.02562 * 12 10 9 37 37 H 1.09000 * 109.47061 * 300.00229 * 12 10 9 38 38 H 0.96994 * 119.99397 * 359.97438 * 15 13 10 39 39 H 1.09001 * 109.47342 * 299.99983 * 18 16 15 40 40 H 1.08995 * 109.47405 * 60.00842 * 18 16 15 41 41 H 1.09002 * 109.47042 * 180.02562 * 18 16 15 42 42 H 0.96991 * 120.00459 * 180.02562 * 22 21 19 43 43 H 1.08002 * 119.99673 * 179.97438 * 27 5 4 44 44 H 1.08000 * 120.00005 * 179.97438 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1971 0.0058 5 6 4.2717 -0.0001 0.0060 6 16 6.0337 -0.0001 0.0127 7 8 6.4369 -1.2488 -0.5327 8 8 6.4370 1.2507 -0.5278 9 7 6.5179 -0.0032 1.5964 10 6 6.2192 -1.1548 2.4514 11 1 6.0976 -2.0443 1.8334 12 6 4.9271 -0.8923 3.2274 13 6 7.3530 -1.3680 3.4209 14 8 8.3159 -0.6309 3.3995 15 7 7.2975 -2.3783 4.3112 16 6 8.4000 -2.5859 5.2533 17 1 8.8148 -1.6211 5.5455 18 6 9.4891 -3.4283 4.5863 19 6 7.8878 -3.3033 6.4757 20 1 6.8455 -3.5776 6.5437 21 6 8.7499 -3.6095 7.5071 22 7 10.0192 -3.2750 7.4246 23 14 8.1152 -4.4994 9.0219 24 1 6.6613 -4.7608 8.8696 25 1 8.8367 -5.7880 9.1776 26 1 8.3429 -3.6564 10.2230 27 6 3.5805 -1.1972 0.0000 28 6 2.1981 -1.1972 -0.0058 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5137 31 1 -0.3633 0.8900 0.5139 32 1 1.6582 2.1325 0.0004 33 1 4.1205 2.1324 0.0104 34 1 6.9992 0.7574 1.9578 35 1 4.1070 -0.7380 2.5262 36 1 4.7051 -1.7489 3.8639 37 1 5.0488 -0.0027 3.8455 38 1 6.5276 -2.9680 4.3280 39 1 9.0743 -4.3931 4.2942 40 1 9.8596 -2.9094 3.7024 41 1 10.3092 -3.5831 5.2875 42 1 10.6257 -3.4907 8.1501 43 1 4.1205 -2.1325 -0.0002 44 1 1.6581 -2.1325 -0.0109 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356411737.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:46 Heat of formation + Delta-G solvation = -120.877922 kcal Electronic energy + Delta-G solvation = -27568.363349 eV Core-core repulsion = 23611.246112 eV Total energy + Delta-G solvation = -3957.117237 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.86265 -40.28943 -38.44367 -37.07994 -37.04498 -36.25697 -34.35611 -33.96468 -32.03097 -31.62994 -30.00973 -28.18385 -27.33153 -25.46178 -23.84728 -22.91137 -22.80804 -21.17417 -20.68313 -19.53107 -19.11961 -18.35904 -17.62171 -17.12861 -16.98201 -16.56574 -16.32076 -16.08125 -15.87632 -15.38983 -15.25981 -14.82086 -14.76795 -14.50492 -14.47938 -14.09646 -13.74832 -13.55919 -13.33605 -13.26296 -13.24272 -13.10510 -13.08566 -12.96877 -12.88532 -12.86186 -12.71392 -12.62270 -12.26530 -12.09465 -12.07575 -11.80073 -11.08056 -11.01040 -10.62228 -10.47083 -10.04940 -10.00924 -9.76536 -8.15670 -6.33029 -0.74798 -0.20163 0.34270 1.46523 1.47655 1.59439 1.73058 1.84127 2.35299 2.47170 2.57928 2.74523 3.15353 3.24549 3.65129 3.80748 3.89265 3.93874 3.97796 4.07314 4.26699 4.38557 4.40477 4.69192 4.71731 4.73857 4.79293 4.83691 4.93345 4.98360 5.04122 5.11120 5.12169 5.13229 5.22699 5.28052 5.44189 5.52322 5.61446 5.69733 5.86366 5.90600 5.91468 6.10836 6.75144 6.92606 7.33579 7.51909 8.90914 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016189 B = 0.002808 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.128421 B = 9967.372323 C =11128.563917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.029 4.029 3 C -0.147 4.147 4 C -0.026 4.026 5 C -0.684 4.684 6 S 2.709 3.291 7 O -0.987 6.987 8 O -0.986 6.986 9 N -1.099 6.099 10 C 0.136 3.864 11 H 0.133 0.867 12 C -0.164 4.164 13 C 0.497 3.503 14 O -0.590 6.590 15 N -0.697 5.697 16 C 0.270 3.730 17 H 0.000 1.000 18 C -0.137 4.137 19 C -0.542 4.542 20 H 0.079 0.921 21 C 0.012 3.988 22 N -0.920 5.920 23 Si 0.973 3.027 24 H -0.256 1.256 25 H -0.282 1.282 26 H -0.286 1.286 27 C -0.027 4.027 28 C -0.144 4.144 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.154 0.846 33 H 0.142 0.858 34 H 0.425 0.575 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.064 0.936 38 H 0.408 0.592 39 H 0.042 0.958 40 H 0.010 0.990 41 H 0.066 0.934 42 H 0.264 0.736 43 H 0.148 0.852 44 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.749 4.755 -14.085 28.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.029 4.029 3 C -0.166 4.166 4 C -0.046 4.046 5 C -0.775 4.775 6 S 2.803 3.197 7 O -0.977 6.977 8 O -0.977 6.977 9 N -0.859 5.859 10 C 0.025 3.975 11 H 0.150 0.850 12 C -0.223 4.223 13 C 0.281 3.719 14 O -0.471 6.471 15 N -0.347 5.347 16 C 0.167 3.833 17 H 0.018 0.982 18 C -0.196 4.196 19 C -0.580 4.580 20 H 0.097 0.903 21 C -0.188 4.188 22 N -0.558 5.558 23 Si 0.798 3.202 24 H -0.179 1.179 25 H -0.208 1.208 26 H -0.212 1.212 27 C -0.047 4.047 28 C -0.162 4.162 29 H 0.106 0.894 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.171 0.829 33 H 0.160 0.840 34 H 0.262 0.738 35 H 0.109 0.891 36 H 0.112 0.888 37 H 0.083 0.917 38 H 0.244 0.756 39 H 0.061 0.939 40 H 0.029 0.971 41 H 0.085 0.915 42 H 0.073 0.927 43 H 0.165 0.835 44 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -22.405 5.095 -14.781 27.321 hybrid contribution 0.021 -0.135 1.275 1.283 sum -22.384 4.960 -13.505 26.609 Atomic orbital electron populations 1.21023 0.88485 1.04605 1.03882 1.20687 0.98061 0.92930 0.91238 1.21485 0.93479 0.99446 1.02142 1.21097 0.95687 0.96352 0.91422 1.30414 1.24561 1.00856 1.21646 1.01052 0.74625 0.72427 0.71552 1.93547 1.81924 1.45392 1.76808 1.93544 1.82739 1.44689 1.76706 1.55223 1.72687 1.27807 1.30224 1.20801 0.93737 0.90329 0.92610 0.84967 1.22332 0.94264 1.04415 1.01272 1.21161 0.88095 0.80638 0.81973 1.90639 1.36247 1.47929 1.72271 1.46209 1.23428 1.30812 1.34259 1.18365 0.84173 0.94291 0.86498 0.98164 1.21935 1.01127 0.98586 0.97975 1.21579 0.96408 1.38361 1.01667 0.90310 1.25819 0.94873 0.96370 1.01699 1.70067 1.04671 1.47409 1.33666 0.85286 0.79101 0.77689 0.78174 1.17929 1.20751 1.21220 1.21165 0.95739 0.96337 0.91420 1.21508 0.93485 0.99410 1.01816 0.89364 0.89765 0.89967 0.82865 0.83996 0.73830 0.89110 0.88813 0.91682 0.75552 0.93870 0.97127 0.91533 0.92655 0.83467 0.82528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.64 10.01 71.23 0.71 0.07 16 2 C -0.03 -0.32 5.88 -19.87 -0.12 -0.43 16 3 C -0.15 -1.86 9.70 22.27 0.22 -1.65 16 4 C -0.03 -0.45 9.52 22.27 0.21 -0.23 16 5 C -0.68 -13.27 5.06 22.27 0.11 -13.16 16 6 S 2.71 69.94 5.72 -56.49 -0.32 69.62 16 7 O -0.99 -30.61 16.62 -128.00 -2.13 -32.74 16 8 O -0.99 -30.40 17.28 -128.00 -2.21 -32.61 16 9 N -1.10 -29.09 5.26 -172.52 -0.91 -30.00 16 10 C 0.14 3.55 3.32 44.24 0.15 3.70 16 11 H 0.13 2.90 7.50 -2.39 -0.02 2.89 16 12 C -0.16 -3.14 9.41 71.98 0.68 -2.46 16 13 C 0.50 18.84 7.18 87.66 0.63 19.47 16 14 O -0.59 -27.99 15.65 -3.03 -0.05 -28.04 16 15 N -0.70 -27.22 4.96 -446.09 -2.21 -29.44 16 16 C 0.27 13.65 2.56 44.24 0.11 13.77 16 17 H 0.00 0.03 7.58 -2.39 -0.02 0.01 16 18 C -0.14 -6.95 9.26 71.98 0.67 -6.28 16 19 C -0.54 -27.62 8.73 25.60 0.22 -27.40 16 20 H 0.08 3.67 7.74 -2.91 -0.02 3.65 16 21 C 0.01 0.64 5.30 84.65 0.45 1.09 16 22 N -0.92 -52.26 11.32 21.45 0.24 -52.01 16 23 Si 0.97 40.92 29.54 68.60 2.03 42.95 16 24 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 25 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 26 H -0.29 -12.10 7.11 99.48 0.71 -11.39 16 27 C -0.03 -0.44 8.58 22.27 0.19 -0.25 16 28 C -0.14 -1.73 9.70 22.27 0.22 -1.51 16 29 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.08 0.29 8.09 -2.39 -0.02 0.27 16 31 H 0.08 0.30 8.09 -2.39 -0.02 0.28 16 32 H 0.15 1.18 8.06 -2.91 -0.02 1.16 16 33 H 0.14 2.27 7.62 -2.91 -0.02 2.25 16 34 H 0.42 11.74 8.21 -96.75 -0.79 10.94 16 35 H 0.09 1.33 6.17 -2.39 -0.01 1.32 16 36 H 0.09 1.54 7.56 -2.39 -0.02 1.52 16 37 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.41 12.73 7.96 -92.71 -0.74 12.00 16 39 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 41 H 0.07 3.70 6.07 -2.39 -0.01 3.68 16 42 H 0.26 14.22 8.31 -92.72 -0.77 13.45 16 43 H 0.15 2.13 7.62 -2.91 -0.02 2.11 16 44 H 0.16 1.07 8.06 -2.91 -0.02 1.05 16 Total: -1.00 -76.96 379.11 -1.61 -78.57 By element: Atomic # 1 Polarization: 29.48 SS G_CDS: -0.50 Total: 28.98 kcal Atomic # 6 Polarization: -19.73 SS G_CDS: 4.45 Total: -15.28 kcal Atomic # 7 Polarization: -108.57 SS G_CDS: -2.88 Total: -111.45 kcal Atomic # 8 Polarization: -89.00 SS G_CDS: -4.39 Total: -93.39 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 2.03 Total: 42.95 kcal Atomic # 16 Polarization: 69.94 SS G_CDS: -0.32 Total: 69.62 kcal Total: -76.96 -1.61 -78.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356411737.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.311 kcal (2) G-P(sol) polarization free energy of solvation -76.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds