Wall clock time and date at job start Sat Apr 11 2020 05:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38136 * 120.03364 * 2 1 4 4 C 1.50704 * 119.96485 * 0.02562 * 3 2 1 5 5 S 1.81400 * 109.47274 * 89.99868 * 4 3 2 6 6 C 1.81400 * 101.91865 * 179.97438 * 5 4 3 7 7 O 1.42097 * 108.57845 * 294.48924 * 5 4 3 8 8 O 1.42098 * 108.57482 * 65.51545 * 5 4 3 9 9 C 1.38253 * 120.07211 * 179.97438 * 3 2 1 10 10 C 1.38312 * 120.13910 * 0.02562 * 9 3 2 11 11 C 1.38087 * 120.06746 * 359.74078 * 10 9 3 12 12 C 1.38847 * 120.03715 * 179.97438 * 2 1 3 13 13 N 1.39945 * 120.06853 * 0.02562 * 12 2 1 14 14 C 1.34771 * 120.00098 * 155.46355 * 13 12 2 15 15 O 1.21589 * 119.99659 * 354.37311 * 14 13 12 16 16 N 1.34770 * 120.00277 * 174.37676 * 14 13 12 17 17 C 1.46499 * 120.00085 * 179.72207 * 16 14 13 18 18 H 1.08998 * 109.47193 * 325.27250 * 17 16 14 19 19 C 1.53007 * 109.47167 * 85.27591 * 17 16 14 20 20 C 1.50711 * 109.47158 * 205.27521 * 17 16 14 21 21 H 1.07999 * 119.99359 * 359.97438 * 20 17 16 22 22 C 1.37871 * 119.99879 * 180.02562 * 20 17 16 23 23 N 1.31518 * 120.00447 * 359.97438 * 22 20 17 24 24 Si 1.86800 * 119.99901 * 179.97438 * 22 20 17 25 25 H 1.48498 * 109.47277 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47211 * 119.99886 * 24 22 20 27 27 H 1.48502 * 109.47188 * 239.99621 * 24 22 20 28 28 H 1.09002 * 109.47253 * 270.02145 * 1 2 3 29 29 H 1.09004 * 109.47424 * 30.02177 * 1 2 3 30 30 H 1.09003 * 109.46963 * 150.02567 * 1 2 3 31 31 H 1.09005 * 109.46958 * 210.00186 * 4 3 2 32 32 H 1.09004 * 109.47006 * 329.99654 * 4 3 2 33 33 H 1.08989 * 109.47106 * 60.00384 * 6 5 4 34 34 H 1.09003 * 109.46650 * 180.02562 * 6 5 4 35 35 H 1.09000 * 109.47194 * 300.00038 * 6 5 4 36 36 H 1.08000 * 119.93456 * 179.97438 * 9 3 2 37 37 H 1.08000 * 119.96595 * 180.02562 * 10 9 3 38 38 H 1.08000 * 120.03606 * 180.27257 * 11 10 9 39 39 H 0.96998 * 119.99785 * 335.45873 * 13 12 2 40 40 H 0.96999 * 119.99775 * 359.97438 * 16 14 13 41 41 H 1.08999 * 109.46940 * 179.97438 * 19 17 16 42 42 H 1.08993 * 109.46834 * 300.00200 * 19 17 16 43 43 H 1.08995 * 109.46692 * 60.00097 * 19 17 16 44 44 H 0.96998 * 120.00589 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1959 0.0000 4 6 1.4448 2.5010 0.0006 5 16 1.1431 3.0243 1.7111 6 6 0.2445 4.5821 1.4733 7 8 0.2695 2.0861 2.3241 8 8 2.3926 3.3120 2.3235 9 6 3.5809 1.1968 0.0005 10 6 4.2762 0.0011 0.0005 11 6 3.5909 -1.1977 0.0054 12 6 2.2020 -1.2020 0.0005 13 7 1.5045 -2.4152 0.0005 14 6 2.0893 -3.5287 -0.4837 15 8 3.1816 -3.4605 -1.0134 16 7 1.4634 -4.7178 -0.3808 17 6 2.0964 -5.9273 -0.9126 18 1 2.6580 -5.6776 -1.8128 19 6 3.0465 -6.5090 0.1363 20 6 1.0354 -6.9436 -1.2481 21 1 -0.0062 -6.7119 -1.0813 22 6 1.3946 -8.1695 -1.7668 23 7 2.6630 -8.4519 -1.9693 24 14 0.0795 -9.4296 -2.1819 25 1 -1.2592 -8.8711 -1.8639 26 1 0.1475 -9.7577 -3.6287 27 1 0.3048 -10.6615 -1.3839 28 1 -0.3634 0.0004 1.0277 29 1 -0.3634 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5135 31 1 2.0337 3.2608 -0.5134 32 1 0.4922 2.3707 -0.5130 33 1 -0.6727 4.3910 0.9164 34 1 -0.0023 5.0109 2.4445 35 1 0.8691 5.2804 0.9162 36 1 4.1192 2.1331 0.0001 37 1 5.3562 0.0051 0.0014 38 1 4.1343 -2.1310 0.0099 39 1 0.6002 -2.4547 0.3491 40 1 0.5922 -4.7723 0.0421 41 1 3.5171 -7.4091 -0.2593 42 1 3.8138 -5.7739 0.3789 43 1 2.4849 -6.7587 1.0364 44 1 2.9158 -9.3144 -2.3339 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360007514.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:53 Heat of formation + Delta-G solvation = -68.955413 kcal Electronic energy + Delta-G solvation = -27292.708343 eV Core-core repulsion = 23337.842636 eV Total energy + Delta-G solvation = -3954.865708 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.51210 -38.79040 -37.24930 -36.26581 -35.36089 -34.40540 -33.54284 -32.47238 -30.93735 -30.05361 -28.75960 -27.41779 -26.55698 -25.27579 -22.87096 -21.24133 -20.84290 -19.83596 -19.14682 -18.24810 -17.46499 -17.02529 -16.55705 -16.24229 -15.85412 -15.72193 -15.39194 -14.99445 -14.62469 -14.19174 -14.00726 -13.65376 -13.62564 -13.58084 -13.34250 -13.13783 -12.93243 -12.52439 -12.43936 -12.38622 -12.26110 -12.08350 -11.78305 -11.51149 -11.46760 -11.30411 -11.10116 -11.02069 -10.95511 -10.76593 -10.33412 -10.26049 -10.13557 -9.37414 -9.06946 -8.59604 -8.55987 -8.11459 -7.67545 -6.15122 -4.24319 -0.44675 1.37808 1.43891 2.40810 3.10846 3.22270 3.30276 3.31356 3.33487 3.59207 3.62467 4.01823 4.17822 4.25726 4.30536 4.34628 4.63172 4.80863 4.88889 4.94627 5.07960 5.17635 5.17699 5.22701 5.48751 5.57129 5.66510 5.71991 5.86689 6.10171 6.34593 6.43944 6.58520 6.69665 6.78617 6.95723 7.09414 7.19350 7.22422 7.42085 7.59850 7.80208 7.96235 8.12581 8.68918 8.80490 9.17893 9.43831 10.90984 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.025847 B = 0.002295 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.023078 B =12196.523253 C =12833.500066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.110 4.110 3 C -0.080 4.080 4 C -0.559 4.559 5 S 2.413 3.587 6 C -0.663 4.663 7 O -0.930 6.930 8 O -0.933 6.933 9 C -0.128 4.128 10 C -0.102 4.102 11 C -0.117 4.117 12 C 0.187 3.813 13 N -0.691 5.691 14 C 0.692 3.308 15 O -0.579 6.579 16 N -0.717 5.717 17 C 0.279 3.721 18 H 0.050 0.950 19 C -0.148 4.148 20 C -0.534 4.534 21 H 0.062 0.938 22 C 0.066 3.934 23 N -0.882 5.882 24 Si 0.903 3.097 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.282 1.282 28 H 0.089 0.911 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.140 0.860 32 H 0.142 0.858 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.127 0.873 36 H 0.125 0.875 37 H 0.128 0.872 38 H 0.156 0.844 39 H 0.404 0.596 40 H 0.387 0.613 41 H 0.091 0.909 42 H 0.015 0.985 43 H 0.026 0.974 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.399 25.569 5.134 26.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.114 4.114 3 C -0.082 4.082 4 C -0.687 4.687 5 S 2.595 3.405 6 C -0.811 4.811 7 O -0.927 6.927 8 O -0.930 6.930 9 C -0.148 4.148 10 C -0.121 4.121 11 C -0.138 4.138 12 C 0.089 3.911 13 N -0.337 5.337 14 C 0.393 3.607 15 O -0.457 6.457 16 N -0.368 5.368 17 C 0.178 3.822 18 H 0.068 0.932 19 C -0.207 4.207 20 C -0.572 4.572 21 H 0.080 0.920 22 C -0.137 4.137 23 N -0.520 5.520 24 Si 0.731 3.269 25 H -0.198 1.198 26 H -0.209 1.209 27 H -0.208 1.208 28 H 0.107 0.893 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.158 0.842 32 H 0.160 0.840 33 H 0.146 0.854 34 H 0.147 0.853 35 H 0.146 0.854 36 H 0.143 0.857 37 H 0.146 0.854 38 H 0.173 0.827 39 H 0.239 0.761 40 H 0.219 0.781 41 H 0.110 0.890 42 H 0.035 0.965 43 H 0.045 0.955 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.089 24.920 5.364 25.817 hybrid contribution -1.793 -0.263 -0.736 1.956 sum -5.882 24.658 4.628 25.769 Atomic orbital electron populations 1.20944 0.90937 1.02847 1.03630 1.19345 0.96040 0.91108 1.04919 1.18286 0.93252 0.90487 1.06143 1.29318 1.10041 1.04901 1.24411 1.08341 0.76318 0.77473 0.78364 1.30354 1.15360 1.23268 1.12134 1.93594 1.66978 1.59201 1.72893 1.93600 1.41792 1.84771 1.72885 1.20951 0.92744 0.98764 1.02389 1.21031 1.00105 0.91561 0.99379 1.21700 0.92754 1.00281 0.99060 1.17330 0.91383 0.84016 0.98344 1.42909 1.18589 1.06759 1.65451 1.16164 0.84670 0.80441 0.79466 1.90838 1.20525 1.85110 1.49234 1.45905 1.22406 1.06576 1.61912 1.18715 0.92127 0.78523 0.92862 0.93209 1.22104 0.98373 1.01784 0.98422 1.21237 0.92844 0.99251 1.43880 0.92013 1.24884 0.95665 0.98082 0.95108 1.69911 1.15330 1.22980 1.43767 0.86371 0.81441 0.81019 0.78107 1.19765 1.20880 1.20846 0.89274 0.91438 0.91288 0.84195 0.84043 0.85350 0.85304 0.85415 0.85664 0.85380 0.82704 0.76064 0.78085 0.89048 0.96543 0.95454 0.92571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.28 8.75 36.00 0.31 -0.96 16 2 C -0.11 -1.42 5.90 -104.43 -0.62 -2.03 16 3 C -0.08 -0.91 5.14 -104.65 -0.54 -1.44 16 4 C -0.56 -3.65 5.52 36.01 0.20 -3.45 16 5 S 2.41 18.14 5.34 -107.50 -0.57 17.57 16 6 C -0.66 -2.08 10.62 101.05 1.07 -1.01 16 7 O -0.93 -10.18 17.08 -57.83 -0.99 -11.17 16 8 O -0.93 -10.66 18.10 -57.83 -1.05 -11.71 16 9 C -0.13 -1.53 9.70 -39.55 -0.38 -1.91 16 10 C -0.10 -1.38 10.04 -39.61 -0.40 -1.78 16 11 C -0.12 -1.91 8.72 -39.40 -0.34 -2.26 16 12 C 0.19 2.92 6.41 -83.69 -0.54 2.39 16 13 N -0.69 -10.89 4.99 -14.23 -0.07 -10.96 16 14 C 0.69 13.94 8.34 -86.93 -0.72 13.22 16 15 O -0.58 -13.69 13.16 5.29 0.07 -13.62 16 16 N -0.72 -14.75 5.07 -59.81 -0.30 -15.05 16 17 C 0.28 7.03 2.56 -69.07 -0.18 6.85 16 18 H 0.05 1.45 7.57 -51.93 -0.39 1.06 16 19 C -0.15 -3.66 9.26 37.16 0.34 -3.32 16 20 C -0.53 -13.95 8.73 -34.44 -0.30 -14.25 16 21 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 22 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 23 N -0.88 -24.64 11.32 55.43 0.63 -24.01 16 24 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 25 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 28 H 0.09 0.89 7.42 -51.93 -0.39 0.50 16 29 H 0.07 0.50 5.95 -51.93 -0.31 0.19 16 30 H 0.07 0.67 6.98 -51.93 -0.36 0.31 16 31 H 0.14 0.48 8.09 -51.92 -0.42 0.06 16 32 H 0.14 0.57 5.94 -51.92 -0.31 0.27 16 33 H 0.13 0.15 8.14 -51.93 -0.42 -0.27 16 34 H 0.13 0.37 8.14 -51.92 -0.42 -0.05 16 35 H 0.13 0.15 8.14 -51.92 -0.42 -0.27 16 36 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 37 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 38 H 0.16 2.90 5.79 -52.49 -0.30 2.60 16 39 H 0.40 5.05 7.41 -40.82 -0.30 4.75 16 40 H 0.39 6.79 8.56 -40.82 -0.35 6.44 16 41 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 42 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 373.55 15.07 5.63 5.63 Total: -1.00 -36.58 373.55 -9.81 -46.39 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -5.95 Total: 9.79 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: -2.18 Total: -8.29 kcal Atomic # 7 Polarization: -50.28 SS G_CDS: 0.25 Total: -50.02 kcal Atomic # 8 Polarization: -34.53 SS G_CDS: -1.96 Total: -36.50 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 16 Polarization: 18.14 SS G_CDS: -0.57 Total: 17.57 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.58 -9.81 -46.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360007514.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.567 kcal (2) G-P(sol) polarization free energy of solvation -36.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds