Wall clock time and date at job start Sat Apr 11 2020 05:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38140 * 120.03857 * 2 1 4 4 C 1.50703 * 119.95974 * 0.02562 * 3 2 1 5 5 S 1.81400 * 109.46749 * 269.99368 * 4 3 2 6 6 C 1.81399 * 101.92063 * 180.02562 * 5 4 3 7 7 O 1.42101 * 108.58011 * 294.49264 * 5 4 3 8 8 O 1.42101 * 108.57950 * 65.51640 * 5 4 3 9 9 C 1.38260 * 120.07242 * 179.97438 * 3 2 1 10 10 C 1.38302 * 120.14185 * 0.02562 * 9 3 2 11 11 C 1.38091 * 120.06692 * 0.02562 * 10 9 3 12 12 C 1.38849 * 120.03530 * 180.02562 * 2 1 3 13 13 N 1.39944 * 120.07193 * 0.02562 * 12 2 1 14 14 C 1.34773 * 119.99961 * 145.26654 * 13 12 2 15 15 O 1.21583 * 119.99969 * 4.49622 * 14 13 12 16 16 N 1.34777 * 119.99638 * 184.50198 * 14 13 12 17 17 C 1.46498 * 119.99958 * 180.02562 * 16 14 13 18 18 H 1.09006 * 109.47467 * 34.99419 * 17 16 14 19 19 C 1.52999 * 109.47321 * 274.99768 * 17 16 14 20 20 C 1.50700 * 109.47734 * 154.99729 * 17 16 14 21 21 H 1.08004 * 119.99363 * 359.97438 * 20 17 16 22 22 C 1.37872 * 120.00650 * 180.02562 * 20 17 16 23 23 N 1.31516 * 119.99687 * 359.97438 * 22 20 17 24 24 Si 1.86796 * 120.00468 * 179.97438 * 22 20 17 25 25 H 1.48504 * 109.46919 * 59.99432 * 24 22 20 26 26 H 1.48495 * 109.47557 * 179.97438 * 24 22 20 27 27 H 1.48507 * 109.46922 * 300.00098 * 24 22 20 28 28 H 1.09004 * 109.47476 * 269.99630 * 1 2 3 29 29 H 1.09005 * 109.47344 * 29.99691 * 1 2 3 30 30 H 1.08999 * 109.47113 * 149.99621 * 1 2 3 31 31 H 1.09001 * 109.47497 * 29.99367 * 4 3 2 32 32 H 1.09001 * 109.47161 * 149.99981 * 4 3 2 33 33 H 1.08998 * 109.46950 * 60.00490 * 6 5 4 34 34 H 1.09003 * 109.46855 * 180.02562 * 6 5 4 35 35 H 1.09000 * 109.47044 * 299.99914 * 6 5 4 36 36 H 1.08003 * 119.92751 * 180.27905 * 9 3 2 37 37 H 1.07998 * 119.96402 * 180.02562 * 10 9 3 38 38 H 1.08007 * 120.03690 * 180.02562 * 11 10 9 39 39 H 0.97001 * 119.99586 * 325.27225 * 13 12 2 40 40 H 0.97001 * 120.00336 * 359.97438 * 16 14 13 41 41 H 1.09004 * 109.47015 * 59.99500 * 19 17 16 42 42 H 1.09003 * 109.47784 * 179.97438 * 19 17 16 43 43 H 1.09007 * 109.47086 * 300.00159 * 19 17 16 44 44 H 0.97004 * 120.00284 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1959 0.0000 4 6 1.4449 2.5010 0.0006 5 16 1.1421 3.0250 -1.7095 6 6 0.2436 4.5827 -1.4705 7 8 2.3912 3.3128 -2.3228 8 8 0.2680 2.0871 -2.3224 9 6 3.5810 1.1967 0.0005 10 6 4.2762 0.0011 0.0005 11 6 3.5908 -1.1977 -0.0005 12 6 2.2019 -1.2020 -0.0005 13 7 1.5044 -2.4153 -0.0016 14 6 2.0005 -3.4771 -0.6671 15 8 3.0920 -3.4062 -1.1978 16 7 1.2863 -4.6175 -0.7445 17 6 1.8256 -5.7719 -1.4674 18 1 2.9069 -5.8111 -1.3347 19 6 1.4992 -5.6393 -2.9563 20 6 1.2073 -7.0361 -0.9283 21 1 0.4851 -6.9847 -0.1269 22 6 1.5643 -8.2582 -1.4573 23 7 2.4441 -8.3207 -2.4328 24 14 0.7984 -9.8252 -0.7885 25 1 -0.6747 -9.7724 -0.9694 26 1 1.3450 -10.9953 -1.5214 27 1 1.1153 -9.9534 0.6566 28 1 -0.3634 -0.0001 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3633 -0.8899 -0.5139 31 1 0.4926 2.3705 0.5146 32 1 2.0341 3.2605 0.5144 33 1 0.8686 5.2808 -0.9136 34 1 -0.0046 5.0115 -2.4414 35 1 -0.6733 4.3914 -0.9131 36 1 4.1193 2.1330 0.0051 37 1 5.3562 0.0051 0.0014 38 1 4.1342 -2.1312 -0.0001 39 1 0.6640 -2.4919 0.4766 40 1 0.4155 -4.6742 -0.3208 41 1 1.9464 -4.7249 -3.3463 42 1 1.9008 -6.4980 -3.4943 43 1 0.4179 -5.6002 -3.0891 44 1 2.6951 -9.1805 -2.8053 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360007518.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:55 Heat of formation + Delta-G solvation = -100.007585 kcal Electronic energy + Delta-G solvation = -27412.511675 eV Core-core repulsion = 23456.299444 eV Total energy + Delta-G solvation = -3956.212231 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.77982 -40.10923 -37.95465 -37.06008 -36.91868 -35.90625 -34.58058 -34.25314 -32.11102 -30.58628 -30.24343 -28.40763 -27.44319 -27.33956 -24.27681 -22.46328 -22.22508 -21.46140 -19.88971 -19.70403 -18.69130 -17.88752 -17.57020 -17.22642 -17.09376 -16.77708 -16.60103 -16.48705 -16.04927 -15.71734 -15.07166 -14.80483 -14.63874 -14.40242 -14.12906 -13.89372 -13.85604 -13.79379 -13.67293 -13.34421 -13.12745 -13.00195 -12.98387 -12.90964 -12.89415 -12.74539 -12.37579 -12.28776 -12.24059 -12.15224 -12.04321 -11.73053 -11.31863 -11.13078 -10.96369 -10.60875 -9.87958 -9.54224 -9.00436 -8.17903 -6.35850 -1.00465 0.31297 0.38053 1.44953 1.47797 1.55422 1.73109 1.92471 2.13717 2.41869 2.70811 2.88023 3.12432 3.12999 3.39823 3.51533 3.83349 3.96744 4.11288 4.15645 4.22924 4.34693 4.45955 4.57784 4.62382 4.71729 4.78582 4.81063 4.89894 4.91976 5.02727 5.07351 5.24776 5.30980 5.36274 5.42171 5.50319 5.54203 5.60069 5.64447 5.82622 6.05279 6.07318 6.23054 6.71381 7.19369 7.32805 7.63911 8.88620 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.023323 B = 0.002384 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.264065 B =11741.036852 C =12044.134701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.103 4.103 3 C -0.086 4.086 4 C -0.551 4.551 5 S 2.393 3.607 6 C -0.632 4.632 7 O -0.987 6.987 8 O -0.981 6.981 9 C -0.122 4.122 10 C -0.116 4.116 11 C -0.137 4.137 12 C 0.148 3.852 13 N -0.674 5.674 14 C 0.691 3.309 15 O -0.624 6.624 16 N -0.713 5.713 17 C 0.290 3.710 18 H -0.001 1.001 19 C -0.135 4.135 20 C -0.547 4.547 21 H 0.076 0.924 22 C 0.013 3.987 23 N -0.918 5.918 24 Si 0.976 3.024 25 H -0.263 1.263 26 H -0.287 1.287 27 H -0.270 1.270 28 H 0.105 0.895 29 H 0.091 0.909 30 H 0.060 0.940 31 H 0.177 0.823 32 H 0.184 0.816 33 H 0.160 0.840 34 H 0.133 0.867 35 H 0.160 0.840 36 H 0.158 0.842 37 H 0.143 0.857 38 H 0.113 0.887 39 H 0.420 0.580 40 H 0.404 0.596 41 H 0.007 0.993 42 H 0.069 0.931 43 H 0.040 0.960 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.212 28.889 10.528 31.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.107 4.107 3 C -0.088 4.088 4 C -0.679 4.679 5 S 2.582 3.418 6 C -0.785 4.785 7 O -0.984 6.984 8 O -0.978 6.978 9 C -0.142 4.142 10 C -0.134 4.134 11 C -0.159 4.159 12 C 0.052 3.948 13 N -0.323 5.323 14 C 0.391 3.609 15 O -0.505 6.505 16 N -0.366 5.366 17 C 0.186 3.814 18 H 0.017 0.983 19 C -0.194 4.194 20 C -0.585 4.585 21 H 0.094 0.906 22 C -0.187 4.187 23 N -0.556 5.556 24 Si 0.801 3.199 25 H -0.188 1.188 26 H -0.212 1.212 27 H -0.195 1.195 28 H 0.124 0.876 29 H 0.110 0.890 30 H 0.079 0.921 31 H 0.194 0.806 32 H 0.202 0.798 33 H 0.178 0.822 34 H 0.152 0.848 35 H 0.178 0.822 36 H 0.176 0.824 37 H 0.161 0.839 38 H 0.131 0.869 39 H 0.259 0.741 40 H 0.239 0.761 41 H 0.026 0.974 42 H 0.088 0.912 43 H 0.059 0.941 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.957 28.290 9.072 30.513 hybrid contribution -0.609 -1.176 0.806 1.550 sum -7.566 27.114 9.877 29.832 Atomic orbital electron populations 1.21058 0.88760 1.04618 1.04208 1.19832 0.97749 0.90585 1.02561 1.18862 0.93559 0.92324 1.04064 1.29297 1.11920 1.03116 1.23602 1.08411 0.75584 0.79008 0.78812 1.30089 1.16004 1.18760 1.13660 1.93543 1.44458 1.85786 1.74620 1.93557 1.67445 1.62245 1.74583 1.21422 0.93510 0.99155 1.00091 1.21255 1.01100 0.91429 0.99631 1.21455 0.93655 0.99644 1.01114 1.17571 0.91208 0.84667 1.01341 1.42423 1.26925 1.08618 1.54310 1.16283 0.84136 0.81033 0.79399 1.90846 1.22546 1.83289 1.53822 1.45448 1.21923 1.11681 1.57512 1.18252 0.93072 0.81625 0.88427 0.98273 1.21938 0.99150 0.99026 0.99266 1.21487 1.26183 0.90784 1.20058 0.90620 1.25835 0.95237 1.02680 0.94930 1.70059 1.32801 1.26478 1.26285 0.85336 0.78900 0.77417 0.78290 1.18772 1.21229 1.19500 0.87624 0.89048 0.92056 0.80557 0.79818 0.82185 0.84824 0.82168 0.82433 0.83945 0.86921 0.74112 0.76081 0.97414 0.91247 0.94052 0.92485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.35 8.66 71.23 0.62 -1.73 16 2 C -0.10 -2.56 5.90 -19.74 -0.12 -2.68 16 3 C -0.09 -1.76 5.14 -19.88 -0.10 -1.86 16 4 C -0.55 -4.63 5.22 71.24 0.37 -4.26 16 5 S 2.39 33.52 5.33 -56.49 -0.30 33.21 16 6 C -0.63 -1.05 10.62 113.37 1.20 0.16 16 7 O -0.99 -23.36 18.10 -127.37 -2.30 -25.66 16 8 O -0.98 -23.20 16.31 -127.37 -2.08 -25.28 16 9 C -0.12 -2.70 9.70 22.29 0.22 -2.49 16 10 C -0.12 -3.19 10.04 22.25 0.22 -2.97 16 11 C -0.14 -4.81 8.70 22.39 0.19 -4.61 16 12 C 0.15 4.77 6.29 38.15 0.24 5.01 16 13 N -0.67 -21.99 4.75 -317.18 -1.51 -23.50 16 14 C 0.69 30.02 8.37 179.06 1.50 31.52 16 15 O -0.62 -32.90 13.42 -3.98 -0.05 -32.95 16 16 N -0.71 -30.85 5.07 -461.42 -2.34 -33.19 16 17 C 0.29 15.51 2.56 44.25 0.11 15.62 16 18 H 0.00 -0.04 7.58 -2.38 -0.02 -0.06 16 19 C -0.13 -7.16 9.26 71.98 0.67 -6.50 16 20 C -0.55 -29.24 8.73 25.60 0.22 -29.01 16 21 H 0.08 3.73 7.74 -2.91 -0.02 3.70 16 22 C 0.01 0.72 5.30 84.65 0.45 1.17 16 23 N -0.92 -53.48 11.32 21.45 0.24 -53.23 16 24 Si 0.98 42.20 29.54 68.60 2.03 44.23 16 25 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 26 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 27 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 28 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.09 1.40 4.82 -2.38 -0.01 1.39 16 30 H 0.06 1.28 7.17 -2.39 -0.02 1.26 16 31 H 0.18 0.24 6.70 -2.39 -0.02 0.23 16 32 H 0.18 -0.02 8.08 -2.39 -0.02 -0.04 16 33 H 0.16 -0.64 8.14 -2.39 -0.02 -0.66 16 34 H 0.13 0.31 8.14 -2.39 -0.02 0.29 16 35 H 0.16 -0.63 8.14 -2.39 -0.02 -0.65 16 36 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 37 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 38 H 0.11 4.68 6.20 -2.91 -0.02 4.66 16 39 H 0.42 10.17 7.87 -92.71 -0.73 9.44 16 40 H 0.40 14.33 8.56 -92.71 -0.79 13.54 16 41 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 42 H 0.07 3.99 6.07 -2.39 -0.01 3.97 16 43 H 0.04 2.01 8.14 -2.38 -0.02 1.99 16 44 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -90.19 373.70 -0.99 -91.18 By element: Atomic # 1 Polarization: 28.31 SS G_CDS: -0.47 Total: 27.83 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: 5.80 Total: -2.64 kcal Atomic # 7 Polarization: -106.32 SS G_CDS: -3.61 Total: -109.93 kcal Atomic # 8 Polarization: -79.46 SS G_CDS: -4.44 Total: -83.89 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Atomic # 16 Polarization: 33.52 SS G_CDS: -0.30 Total: 33.21 kcal Total: -90.19 -0.99 -91.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360007518.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.825 kcal (2) G-P(sol) polarization free energy of solvation -90.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds