Wall clock time and date at job start Sat Apr 11 2020 05:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38296 * 119.96452 * 2 1 4 4 C 1.38258 * 120.14357 * 179.97438 * 3 2 1 5 5 C 1.38136 * 120.06478 * 0.23465 * 4 3 2 6 6 C 1.38849 * 119.93216 * 359.49128 * 5 4 3 7 7 N 1.39944 * 120.07382 * 180.25365 * 6 5 4 8 8 C 1.34777 * 119.99621 * 334.33814 * 7 6 5 9 9 O 1.21587 * 120.00374 * 354.00888 * 8 7 6 10 10 N 1.34780 * 119.99812 * 174.01048 * 8 7 6 11 11 C 1.46499 * 120.00223 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.47420 * 180.02562 * 11 10 8 13 13 C 1.53002 * 109.47212 * 180.02562 * 12 11 10 14 14 C 1.50704 * 109.46983 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99949 * 359.97438 * 14 13 12 16 16 C 1.37872 * 119.99519 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99531 * 179.97438 * 16 14 13 18 18 Si 1.86795 * 120.00538 * 0.02562 * 16 14 13 19 19 H 1.48505 * 109.47229 * 89.99759 * 18 16 14 20 20 H 1.48495 * 109.47189 * 209.99915 * 18 16 14 21 21 H 1.48499 * 109.46955 * 329.99887 * 18 16 14 22 22 C 1.38085 * 119.96461 * 179.97438 * 2 1 3 23 23 S 1.76205 * 120.03852 * 0.02562 * 22 2 1 24 24 C 1.81400 * 104.44956 * 274.97200 * 23 22 2 25 25 O 1.42104 * 104.27610 * 31.04056 * 23 22 2 26 26 O 1.42098 * 104.27833 * 158.89709 * 23 22 2 27 27 H 1.08993 * 109.46930 * 85.91315 * 1 2 3 28 28 H 1.09005 * 109.46842 * 205.90812 * 1 2 3 29 29 H 1.09001 * 109.46963 * 325.90892 * 1 2 3 30 30 H 1.08006 * 119.92857 * 359.97438 * 3 2 1 31 31 H 1.07998 * 119.96776 * 179.97438 * 4 3 2 32 32 H 1.08008 * 120.03517 * 179.71931 * 5 4 3 33 33 H 0.96992 * 120.00026 * 154.33538 * 7 6 5 34 34 H 0.96999 * 119.99996 * 0.02562 * 10 8 7 35 35 H 1.08998 * 109.47281 * 300.00336 * 11 10 8 36 36 H 1.08999 * 109.46635 * 59.99987 * 11 10 8 37 37 H 1.08998 * 109.46991 * 300.00296 * 12 11 10 38 38 H 1.09000 * 109.46989 * 59.99902 * 12 11 10 39 39 H 1.09006 * 109.47051 * 299.99669 * 13 12 11 40 40 H 1.08999 * 109.46915 * 59.99726 * 13 12 11 41 41 H 0.97002 * 119.99823 * 180.02562 * 17 16 14 42 42 H 1.09001 * 109.46949 * 59.99566 * 24 23 22 43 43 H 1.08993 * 109.47117 * 179.97438 * 24 23 22 44 44 H 1.09004 * 109.46651 * 299.99772 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1978 1.1981 0.0000 4 6 3.5804 1.2024 0.0005 5 6 4.2761 0.0091 -0.0038 6 6 3.5856 -1.1955 0.0019 7 7 4.2875 -2.4062 0.0029 8 6 5.5340 -2.4628 -0.5067 9 8 6.0073 -1.4919 -1.0649 10 7 6.2557 -3.5958 -0.3977 11 6 7.6103 -3.6577 -0.9521 12 6 8.2036 -5.0445 -0.6957 13 6 9.6186 -5.1088 -1.2742 14 6 10.2026 -6.4750 -1.0222 15 1 9.6228 -7.2225 -0.5011 16 6 11.4772 -6.7706 -1.4568 17 7 11.9871 -7.9627 -1.2364 18 14 12.4804 -5.4776 -2.3574 19 1 13.2662 -4.6880 -1.3753 20 1 13.4047 -6.1432 -3.3102 21 1 11.5679 -4.5736 -3.1026 22 6 2.1968 -1.1963 0.0005 23 16 1.3158 -2.7223 0.0005 24 6 0.9570 -3.0378 1.7505 25 8 0.1190 -2.4360 -0.7101 26 8 2.2534 -3.6682 -0.4947 27 1 -0.3633 0.0732 -1.0250 28 1 -0.3633 -0.9244 0.4490 29 1 -0.3633 0.8511 0.5760 30 1 1.6560 2.1325 -0.0004 31 1 4.1169 2.1397 0.0001 32 1 5.3562 0.0130 -0.0080 33 1 3.8771 -3.2045 0.3704 34 1 5.8780 -4.3706 0.0473 35 1 7.5725 -3.4719 -2.0255 36 1 8.2333 -2.9016 -0.4743 37 1 8.2414 -5.2307 0.3776 38 1 7.5805 -5.8002 -1.1738 39 1 9.5811 -4.9225 -2.3476 40 1 10.2414 -4.3530 -0.7957 41 1 12.8840 -8.1706 -1.5419 42 1 0.3564 -2.2212 2.1512 43 1 0.4066 -3.9737 1.8455 44 1 1.8921 -3.1078 2.3062 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000417347477.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:58 Heat of formation + Delta-G solvation = -62.716108 kcal Electronic energy + Delta-G solvation = -27114.114499 eV Core-core repulsion = 23159.519348 eV Total energy + Delta-G solvation = -3954.595151 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.96116 -39.19261 -37.81622 -36.40870 -35.84906 -34.89220 -33.45018 -32.90461 -31.56581 -30.18636 -29.96456 -27.36877 -27.00383 -23.71883 -23.25390 -22.12571 -20.87454 -20.22570 -19.61529 -18.44202 -17.77385 -17.46205 -16.86382 -16.67362 -16.36013 -15.86270 -15.48240 -15.21091 -14.79788 -14.49005 -14.29316 -14.13537 -13.99623 -13.84600 -13.68490 -13.54516 -13.10962 -12.87529 -12.76386 -12.69445 -12.46770 -12.11181 -12.02003 -11.94038 -11.81099 -11.42827 -11.09414 -10.97998 -10.89732 -10.61186 -10.22927 -10.04015 -9.83253 -9.70350 -9.51460 -9.23337 -8.98429 -8.55695 -8.32029 -6.06449 -4.05179 -0.41852 0.52059 1.01945 2.30937 2.53582 2.94323 3.25905 3.31216 3.39007 3.43396 3.53689 3.62539 4.06636 4.24164 4.25009 4.44021 4.44360 4.56439 4.82162 4.92827 5.07781 5.10069 5.25796 5.27659 5.31163 5.38960 5.49609 5.64809 5.71811 5.79759 5.93790 5.99465 6.13282 6.16060 6.30549 6.43841 6.59776 6.67293 6.76335 6.82113 7.22259 7.35675 7.74712 7.83215 8.40958 8.50252 8.97447 9.55741 11.06766 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.021250 B = 0.002263 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.316124 B =12372.406748 C =13365.740182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.033 3.967 3 C -0.171 4.171 4 C -0.037 4.037 5 C -0.160 4.160 6 C 0.282 3.718 7 N -0.684 5.684 8 C 0.704 3.296 9 O -0.573 6.573 10 N -0.729 5.729 11 C 0.130 3.870 12 C -0.114 4.114 13 C -0.011 4.011 14 C -0.522 4.522 15 H 0.072 0.928 16 C 0.066 3.934 17 N -0.903 5.903 18 Si 0.880 3.120 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.264 1.264 22 C -0.706 4.706 23 S 2.498 3.502 24 C -0.656 4.656 25 O -0.929 6.929 26 O -0.938 6.938 27 H 0.094 0.906 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.130 0.870 31 H 0.132 0.868 32 H 0.157 0.843 33 H 0.415 0.585 34 H 0.400 0.600 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.019 0.981 40 H 0.015 0.985 41 H 0.263 0.737 42 H 0.134 0.866 43 H 0.135 0.865 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.317 17.201 8.909 33.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.032 3.968 3 C -0.191 4.191 4 C -0.056 4.056 5 C -0.182 4.182 6 C 0.181 3.819 7 N -0.335 5.335 8 C 0.405 3.595 9 O -0.450 6.450 10 N -0.382 5.382 11 C 0.007 3.993 12 C -0.152 4.152 13 C -0.049 4.049 14 C -0.560 4.560 15 H 0.090 0.910 16 C -0.135 4.135 17 N -0.542 5.542 18 Si 0.707 3.293 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.189 1.189 22 C -0.797 4.797 23 S 2.678 3.322 24 C -0.806 4.806 25 O -0.926 6.926 26 O -0.934 6.934 27 H 0.113 0.887 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.148 0.852 31 H 0.150 0.850 32 H 0.174 0.826 33 H 0.258 0.742 34 H 0.235 0.765 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.038 0.962 40 H 0.033 0.967 41 H 0.073 0.927 42 H 0.153 0.847 43 H 0.153 0.847 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -26.813 17.319 7.655 32.825 hybrid contribution 0.631 0.356 0.508 0.885 sum -26.183 17.674 8.164 32.628 Atomic orbital electron populations 1.21280 0.89759 1.03397 1.04783 1.19336 0.95712 0.91224 0.90540 1.21065 0.94401 0.97541 1.06086 1.21367 0.94109 0.98087 0.92070 1.21596 1.02481 0.90390 1.03688 1.16978 0.88313 0.86150 0.90481 1.43373 1.15962 1.11146 1.63040 1.15909 0.80029 0.84360 0.79250 1.90895 1.70908 1.35615 1.47594 1.45369 1.17358 1.13640 1.61874 1.21633 0.79165 0.99809 0.98671 1.21727 0.98940 0.93008 1.01536 1.19503 0.91219 0.97954 0.96188 1.21088 1.00155 0.97068 1.37667 0.90986 1.25031 0.97658 0.95299 0.95536 1.69914 1.16541 1.20583 1.47141 0.86769 0.80264 0.82065 0.80158 1.20268 1.21383 1.18859 1.29770 1.03016 1.19340 1.27590 1.05231 0.74932 0.74202 0.77808 1.30316 1.12722 1.12422 1.25113 1.93607 1.46374 1.83831 1.68774 1.93468 1.61688 1.60942 1.77322 0.88743 0.90604 0.90687 0.85224 0.84973 0.82584 0.74220 0.76547 0.91566 0.91567 0.92025 0.91886 0.96227 0.96701 0.92701 0.84708 0.84674 0.84952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 8.52 36.01 0.31 -0.56 16 2 C 0.03 0.28 5.86 -104.65 -0.61 -0.33 16 3 C -0.17 -1.38 9.71 -39.55 -0.38 -1.76 16 4 C -0.04 -0.34 10.04 -39.61 -0.40 -0.74 16 5 C -0.16 -1.91 8.71 -39.39 -0.34 -2.25 16 6 C 0.28 3.31 6.37 -83.69 -0.53 2.77 16 7 N -0.68 -8.31 4.46 -14.22 -0.06 -8.37 16 8 C 0.70 10.65 8.35 -86.91 -0.73 9.92 16 9 O -0.57 -10.35 13.57 5.29 0.07 -10.27 16 10 N -0.73 -10.29 5.56 -65.23 -0.36 -10.65 16 11 C 0.13 2.14 5.67 -4.04 -0.02 2.12 16 12 C -0.11 -2.10 5.27 -26.73 -0.14 -2.25 16 13 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 14 C -0.52 -14.64 9.66 -34.44 -0.33 -14.97 16 15 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 16 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 17 N -0.90 -27.72 13.96 55.43 0.77 -26.94 16 18 Si 0.88 21.71 27.47 -169.99 -4.67 17.05 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 21 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 22 C -0.71 -6.75 5.67 -39.40 -0.22 -6.97 16 23 S 2.50 19.51 5.03 -107.50 -0.54 18.96 16 24 C -0.66 -2.03 10.70 101.05 1.08 -0.95 16 25 O -0.93 -9.36 14.56 -57.54 -0.84 -10.20 16 26 O -0.94 -10.17 14.43 -57.54 -0.83 -11.00 16 27 H 0.09 0.67 8.13 -51.93 -0.42 0.24 16 28 H 0.08 0.41 4.96 -51.93 -0.26 0.16 16 29 H 0.07 0.30 8.11 -51.93 -0.42 -0.12 16 30 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 31 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 32 H 0.16 2.11 5.86 -52.48 -0.31 1.80 16 33 H 0.42 4.03 6.00 -40.82 -0.25 3.79 16 34 H 0.40 4.58 8.49 -40.82 -0.35 4.24 16 35 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.02 0.46 7.20 -51.93 -0.37 0.08 16 40 H 0.01 0.34 7.57 -51.93 -0.39 -0.06 16 41 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 42 H 0.13 0.19 7.66 -51.92 -0.40 -0.21 16 43 H 0.13 0.21 8.14 -51.93 -0.42 -0.21 16 44 H 0.13 0.24 8.14 -51.92 -0.42 -0.18 16 LS Contribution 369.11 15.07 5.56 5.56 Total: -1.00 -37.60 369.11 -9.57 -47.17 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -6.13 Total: 3.19 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: -2.54 Total: -14.51 kcal Atomic # 7 Polarization: -46.31 SS G_CDS: 0.35 Total: -45.96 kcal Atomic # 8 Polarization: -29.87 SS G_CDS: -1.60 Total: -31.46 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.05 kcal Atomic # 16 Polarization: 19.51 SS G_CDS: -0.54 Total: 18.96 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -37.60 -9.57 -47.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000417347477.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.544 kcal (2) G-P(sol) polarization free energy of solvation -37.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds