Wall clock time and date at job start Sat Apr 11 2020 05:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38296 * 119.96452 * 2 1 4 4 C 1.38258 * 120.14357 * 179.97438 * 3 2 1 5 5 C 1.38136 * 120.06478 * 0.23465 * 4 3 2 6 6 C 1.38849 * 119.93216 * 359.49128 * 5 4 3 7 7 N 1.39944 * 120.07382 * 180.25365 * 6 5 4 8 8 C 1.34777 * 119.99621 * 334.33814 * 7 6 5 9 9 O 1.21587 * 120.00374 * 354.00888 * 8 7 6 10 10 N 1.34780 * 119.99812 * 174.01048 * 8 7 6 11 11 C 1.46499 * 120.00223 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.47420 * 180.02562 * 11 10 8 13 13 C 1.53002 * 109.47212 * 180.02562 * 12 11 10 14 14 C 1.50704 * 109.46983 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99949 * 359.97438 * 14 13 12 16 16 C 1.37872 * 119.99519 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99531 * 179.97438 * 16 14 13 18 18 Si 1.86795 * 120.00538 * 0.02562 * 16 14 13 19 19 H 1.48505 * 109.47229 * 89.99759 * 18 16 14 20 20 H 1.48495 * 109.47189 * 209.99915 * 18 16 14 21 21 H 1.48499 * 109.46955 * 329.99887 * 18 16 14 22 22 C 1.38085 * 119.96461 * 179.97438 * 2 1 3 23 23 S 1.76205 * 120.03852 * 0.02562 * 22 2 1 24 24 C 1.81400 * 104.44956 * 274.97200 * 23 22 2 25 25 O 1.42104 * 104.27610 * 31.04056 * 23 22 2 26 26 O 1.42098 * 104.27833 * 158.89709 * 23 22 2 27 27 H 1.08993 * 109.46930 * 85.91315 * 1 2 3 28 28 H 1.09005 * 109.46842 * 205.90812 * 1 2 3 29 29 H 1.09001 * 109.46963 * 325.90892 * 1 2 3 30 30 H 1.08006 * 119.92857 * 359.97438 * 3 2 1 31 31 H 1.07998 * 119.96776 * 179.97438 * 4 3 2 32 32 H 1.08008 * 120.03517 * 179.71931 * 5 4 3 33 33 H 0.96992 * 120.00026 * 154.33538 * 7 6 5 34 34 H 0.96999 * 119.99996 * 0.02562 * 10 8 7 35 35 H 1.08998 * 109.47281 * 300.00336 * 11 10 8 36 36 H 1.08999 * 109.46635 * 59.99987 * 11 10 8 37 37 H 1.08998 * 109.46991 * 300.00296 * 12 11 10 38 38 H 1.09000 * 109.46989 * 59.99902 * 12 11 10 39 39 H 1.09006 * 109.47051 * 299.99669 * 13 12 11 40 40 H 1.08999 * 109.46915 * 59.99726 * 13 12 11 41 41 H 0.97002 * 119.99823 * 180.02562 * 17 16 14 42 42 H 1.09001 * 109.46949 * 59.99566 * 24 23 22 43 43 H 1.08993 * 109.47117 * 179.97438 * 24 23 22 44 44 H 1.09004 * 109.46651 * 299.99772 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1978 1.1981 0.0000 4 6 3.5804 1.2024 0.0005 5 6 4.2761 0.0091 -0.0038 6 6 3.5856 -1.1955 0.0019 7 7 4.2875 -2.4062 0.0029 8 6 5.5340 -2.4628 -0.5067 9 8 6.0073 -1.4919 -1.0649 10 7 6.2557 -3.5958 -0.3977 11 6 7.6103 -3.6577 -0.9521 12 6 8.2036 -5.0445 -0.6957 13 6 9.6186 -5.1088 -1.2742 14 6 10.2026 -6.4750 -1.0222 15 1 9.6228 -7.2225 -0.5011 16 6 11.4772 -6.7706 -1.4568 17 7 11.9871 -7.9627 -1.2364 18 14 12.4804 -5.4776 -2.3574 19 1 13.2662 -4.6880 -1.3753 20 1 13.4047 -6.1432 -3.3102 21 1 11.5679 -4.5736 -3.1026 22 6 2.1968 -1.1963 0.0005 23 16 1.3158 -2.7223 0.0005 24 6 0.9570 -3.0378 1.7505 25 8 0.1190 -2.4360 -0.7101 26 8 2.2534 -3.6682 -0.4947 27 1 -0.3633 0.0732 -1.0250 28 1 -0.3633 -0.9244 0.4490 29 1 -0.3633 0.8511 0.5760 30 1 1.6560 2.1325 -0.0004 31 1 4.1169 2.1397 0.0001 32 1 5.3562 0.0130 -0.0080 33 1 3.8771 -3.2045 0.3704 34 1 5.8780 -4.3706 0.0473 35 1 7.5725 -3.4719 -2.0255 36 1 8.2333 -2.9016 -0.4743 37 1 8.2414 -5.2307 0.3776 38 1 7.5805 -5.8002 -1.1738 39 1 9.5811 -4.9225 -2.3476 40 1 10.2414 -4.3530 -0.7957 41 1 12.8840 -8.1706 -1.5419 42 1 0.3564 -2.2212 2.1512 43 1 0.4066 -3.9737 1.8455 44 1 1.8921 -3.1078 2.3062 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000417347477.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:57 Heat of formation + Delta-G solvation = -90.939506 kcal Electronic energy + Delta-G solvation = -27115.338357 eV Core-core repulsion = 23159.519348 eV Total energy + Delta-G solvation = -3955.819010 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.94141 -40.05186 -38.53910 -37.17756 -37.08234 -35.91899 -35.22035 -33.71235 -33.24539 -31.06630 -30.33269 -28.80793 -27.85822 -25.07631 -24.07402 -23.29614 -22.28662 -21.46002 -20.37695 -19.41192 -18.99364 -18.46746 -18.16728 -17.47820 -17.08251 -16.94520 -16.59166 -16.21048 -16.01117 -15.77239 -15.53343 -15.19546 -14.84338 -14.76935 -14.45697 -14.07757 -13.96448 -13.82538 -13.77558 -13.66401 -13.51199 -13.35091 -13.14851 -12.78423 -12.71593 -12.70750 -12.44819 -11.94205 -11.91239 -11.78569 -11.69929 -11.60096 -11.44745 -11.32727 -11.10257 -10.75630 -10.27533 -10.15291 -9.14446 -8.28924 -6.32697 -0.94345 -0.19802 0.26193 1.37082 1.37803 1.39512 1.50996 1.85738 1.90216 2.36840 2.52083 2.90559 3.04139 3.06861 3.11703 3.70425 3.93715 4.04096 4.05907 4.08178 4.20343 4.23542 4.31803 4.38348 4.49647 4.65927 4.74114 4.83380 4.86582 4.88850 4.91748 4.99135 5.03843 5.18306 5.29411 5.34228 5.41071 5.46322 5.49766 5.56061 5.64953 5.80129 5.92739 6.27968 6.75117 6.80778 7.29561 7.31990 8.87468 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.021250 B = 0.002263 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.316124 B =12372.406748 C =13365.740182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.029 3.971 3 C -0.166 4.166 4 C -0.041 4.041 5 C -0.185 4.185 6 C 0.252 3.748 7 N -0.675 5.675 8 C 0.700 3.300 9 O -0.608 6.608 10 N -0.723 5.723 11 C 0.144 3.856 12 C -0.101 4.101 13 C -0.012 4.012 14 C -0.530 4.530 15 H 0.038 0.962 16 C 0.004 3.996 17 N -0.950 5.950 18 Si 0.948 3.052 19 H -0.266 1.266 20 H -0.285 1.285 21 H -0.248 1.248 22 C -0.708 4.708 23 S 2.493 3.507 24 C -0.629 4.629 25 O -0.958 6.958 26 O -0.977 6.977 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.104 0.896 30 H 0.162 0.838 31 H 0.153 0.847 32 H 0.132 0.868 33 H 0.425 0.575 34 H 0.413 0.587 35 H 0.056 0.944 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.020 0.980 40 H 0.023 0.977 41 H 0.266 0.734 42 H 0.161 0.839 43 H 0.159 0.841 44 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.531 19.298 10.056 36.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.028 3.972 3 C -0.185 4.185 4 C -0.060 4.060 5 C -0.207 4.207 6 C 0.153 3.847 7 N -0.327 5.327 8 C 0.401 3.599 9 O -0.487 6.487 10 N -0.377 5.377 11 C 0.020 3.980 12 C -0.139 4.139 13 C -0.050 4.050 14 C -0.568 4.568 15 H 0.056 0.944 16 C -0.193 4.193 17 N -0.591 5.591 18 Si 0.771 3.229 19 H -0.191 1.191 20 H -0.211 1.211 21 H -0.172 1.172 22 C -0.797 4.797 23 S 2.677 3.323 24 C -0.783 4.783 25 O -0.955 6.955 26 O -0.974 6.974 27 H 0.104 0.896 28 H 0.103 0.897 29 H 0.122 0.878 30 H 0.179 0.821 31 H 0.171 0.829 32 H 0.150 0.850 33 H 0.270 0.730 34 H 0.250 0.750 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.038 0.962 40 H 0.041 0.959 41 H 0.075 0.925 42 H 0.180 0.820 43 H 0.177 0.823 44 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -29.069 19.437 8.786 36.056 hybrid contribution 1.151 -0.319 0.258 1.222 sum -27.919 19.118 9.045 35.025 Atomic orbital electron populations 1.21401 0.88017 1.05320 1.04907 1.19745 0.97019 0.90985 0.89469 1.21475 0.93978 0.98822 1.04255 1.21635 0.94940 0.97941 0.91448 1.21558 1.01644 0.91862 1.05617 1.17177 0.89284 0.85728 0.92533 1.43184 1.14882 1.12001 1.62676 1.16046 0.80844 0.83892 0.79149 1.90872 1.71922 1.36765 1.49184 1.45119 1.16598 1.14129 1.61888 1.21280 0.80282 0.98226 0.98222 1.21495 0.96442 0.94318 1.01626 1.19464 0.93773 0.95158 0.96575 1.21458 1.00072 0.98590 1.36660 0.94402 1.25989 0.99148 0.97526 0.96654 1.70062 1.17232 1.22913 1.48912 0.85690 0.78715 0.79370 0.79087 1.19095 1.21137 1.17177 1.30037 1.02149 1.20893 1.26629 1.05292 0.73756 0.73023 0.80239 1.30129 1.14585 1.14690 1.18873 1.93572 1.46540 1.83856 1.71513 1.93411 1.62715 1.61431 1.79794 0.89570 0.89660 0.87759 0.82063 0.82899 0.85017 0.73048 0.75001 0.92525 0.91594 0.91301 0.91873 0.96150 0.95877 0.92531 0.82036 0.82250 0.83054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 8.52 71.24 0.61 -0.78 16 2 C 0.03 0.44 5.86 -19.88 -0.12 0.32 16 3 C -0.17 -2.29 9.71 22.29 0.22 -2.07 16 4 C -0.04 -0.71 10.04 22.25 0.22 -0.49 16 5 C -0.19 -4.51 8.71 22.39 0.19 -4.32 16 6 C 0.25 5.94 6.37 38.15 0.24 6.18 16 7 N -0.67 -16.55 4.46 -317.17 -1.41 -17.96 16 8 C 0.70 21.56 8.35 179.05 1.50 23.05 16 9 O -0.61 -22.69 13.57 -3.99 -0.05 -22.74 16 10 N -0.72 -20.28 5.56 -478.54 -2.66 -22.94 16 11 C 0.14 4.67 5.67 86.38 0.49 5.16 16 12 C -0.10 -3.68 5.27 30.59 0.16 -3.51 16 13 C -0.01 -0.53 4.04 29.85 0.12 -0.41 16 14 C -0.53 -30.18 9.66 25.60 0.25 -29.94 16 15 H 0.04 2.34 7.99 -2.91 -0.02 2.32 16 16 C 0.00 0.21 5.47 84.65 0.46 0.67 16 17 N -0.95 -59.63 13.96 21.45 0.30 -59.33 16 18 Si 0.95 44.61 27.47 68.60 1.88 46.49 16 19 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 20 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 21 H -0.25 -10.96 6.54 99.48 0.65 -10.30 16 22 C -0.71 -12.80 5.67 22.39 0.13 -12.68 16 23 S 2.49 35.54 5.03 -56.49 -0.28 35.26 16 24 C -0.63 -1.43 10.70 113.37 1.21 -0.21 16 25 O -0.96 -18.22 14.56 -127.65 -1.86 -20.08 16 26 O -0.98 -20.95 14.43 -127.65 -1.84 -22.79 16 27 H 0.09 1.05 8.13 -2.39 -0.02 1.03 16 28 H 0.08 0.68 4.96 -2.38 -0.01 0.67 16 29 H 0.10 0.41 8.11 -2.39 -0.02 0.39 16 30 H 0.16 1.14 8.06 -2.91 -0.02 1.12 16 31 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 32 H 0.13 3.81 5.86 -2.91 -0.02 3.80 16 33 H 0.42 8.17 6.00 -92.71 -0.56 7.61 16 34 H 0.41 9.24 8.49 -92.71 -0.79 8.46 16 35 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 38 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.02 0.93 7.20 -2.38 -0.02 0.91 16 40 H 0.02 1.02 7.57 -2.39 -0.02 1.00 16 41 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 42 H 0.16 -0.36 7.66 -2.39 -0.02 -0.38 16 43 H 0.16 -0.23 8.14 -2.39 -0.02 -0.25 16 44 H 0.15 -0.07 8.14 -2.39 -0.02 -0.09 16 Total: -1.00 -84.67 369.11 -0.60 -85.27 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: -0.36 Total: 17.84 kcal Atomic # 6 Polarization: -24.71 SS G_CDS: 5.69 Total: -19.02 kcal Atomic # 7 Polarization: -96.46 SS G_CDS: -3.78 Total: -100.23 kcal Atomic # 8 Polarization: -61.86 SS G_CDS: -3.76 Total: -65.61 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.88 Total: 46.49 kcal Atomic # 16 Polarization: 35.54 SS G_CDS: -0.28 Total: 35.26 kcal Total: -84.67 -0.60 -85.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000417347477.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.666 kcal (2) G-P(sol) polarization free energy of solvation -84.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds