Wall clock time and date at job start Sat Apr 11 2020 05:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38234 * 119.99802 * 2 1 4 4 C 1.38237 * 120.00245 * 179.97438 * 3 2 1 5 5 C 1.38238 * 119.99447 * 359.95267 * 4 3 2 6 6 S 1.76199 * 119.99605 * 179.97438 * 5 4 3 7 7 O 1.42099 * 104.27929 * 333.93398 * 6 5 4 8 8 O 1.42101 * 104.27799 * 206.07071 * 6 5 4 9 9 C 1.81404 * 104.44592 * 90.00420 * 6 5 4 10 10 C 1.53006 * 109.47098 * 179.97438 * 9 6 5 11 11 H 1.08998 * 109.46505 * 59.99714 * 10 9 6 12 12 C 1.52997 * 109.47127 * 179.97438 * 10 9 6 13 13 N 1.46500 * 109.47249 * 300.00353 * 10 9 6 14 14 C 1.34768 * 120.00056 * 154.99998 * 13 10 9 15 15 O 1.21588 * 120.00059 * 359.97438 * 14 13 10 16 16 N 1.34776 * 120.00197 * 179.97438 * 14 13 10 17 17 C 1.46500 * 120.00480 * 179.97438 * 16 14 13 18 18 C 1.50697 * 109.47447 * 179.97438 * 17 16 14 19 19 H 1.08000 * 119.99962 * 0.02562 * 18 17 16 20 20 C 1.37882 * 120.00192 * 179.97438 * 18 17 16 21 21 N 1.31513 * 119.99711 * 0.02562 * 20 18 17 22 22 Si 1.86791 * 120.00014 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47552 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47214 * 120.00259 * 22 20 18 25 25 H 1.48499 * 109.47317 * 240.00092 * 22 20 18 26 26 C 1.38235 * 120.00125 * 0.27963 * 5 4 3 27 27 C 1.38231 * 120.00084 * 359.51171 * 26 5 4 28 28 H 1.09004 * 109.46873 * 90.00234 * 1 2 3 29 29 H 1.09000 * 109.47058 * 210.00054 * 1 2 3 30 30 H 1.08992 * 109.47520 * 330.00339 * 1 2 3 31 31 H 1.08004 * 119.99982 * 359.97002 * 3 2 1 32 32 H 1.07993 * 120.00176 * 179.97438 * 4 3 2 33 33 H 1.09001 * 109.46975 * 59.99940 * 9 6 5 34 34 H 1.08993 * 109.47080 * 299.99443 * 9 6 5 35 35 H 1.09002 * 109.47153 * 180.02562 * 12 10 9 36 36 H 1.09001 * 109.46832 * 60.00321 * 12 10 9 37 37 H 1.09004 * 109.47261 * 300.00303 * 12 10 9 38 38 H 0.97001 * 119.99547 * 334.99826 * 13 10 9 39 39 H 0.97001 * 119.99928 * 359.97438 * 16 14 13 40 40 H 1.09001 * 109.46909 * 300.00175 * 17 16 14 41 41 H 1.09004 * 109.47111 * 59.99913 * 17 16 14 42 42 H 0.96998 * 119.99844 * 179.97438 * 21 20 18 43 43 H 1.08001 * 119.99658 * 179.72554 * 26 5 4 44 44 H 1.07998 * 120.00427 * 180.25570 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 0.0001 0.0021 6 16 6.0337 0.0002 0.0021 7 8 6.3841 1.2364 -0.6046 8 8 6.3842 -1.2376 -0.6016 9 6 6.4862 0.0023 1.7587 10 6 8.0104 0.0019 1.8928 11 1 8.4176 0.8911 1.4115 12 6 8.3921 0.0043 3.3744 13 7 8.5569 -1.1953 1.2491 14 6 9.8239 -1.1945 0.7898 15 8 10.5133 -0.2001 0.9092 16 7 10.3269 -2.2960 0.1981 17 6 11.7040 -2.2951 -0.3017 18 6 12.0176 -3.6364 -0.9129 19 1 11.2661 -4.4119 -0.9280 20 6 13.2635 -3.8733 -1.4539 21 7 14.1785 -2.9287 -1.4360 22 14 13.6519 -5.5356 -2.2121 23 1 12.4618 -6.4177 -2.1075 24 1 14.0101 -5.3559 -3.6421 25 1 14.7924 -6.1547 -1.4902 26 6 3.5805 -1.1971 -0.0028 27 6 2.1982 -1.1971 0.0010 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5137 31 1 1.6581 2.1325 -0.0005 32 1 4.1205 2.1325 0.0001 33 1 6.0793 -0.8871 2.2398 34 1 6.0794 0.8928 2.2376 35 1 9.4779 0.0045 3.4698 36 1 7.9848 -0.8847 3.8559 37 1 7.9855 0.8953 3.8529 38 1 8.0068 -1.9885 1.1535 39 1 9.7771 -3.0895 0.1031 40 1 11.8162 -1.5164 -1.0562 41 1 12.3899 -2.1030 0.5234 42 1 15.0551 -3.0955 -1.8162 43 1 4.1206 -2.1323 -0.0061 44 1 1.6582 -2.1324 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426415137.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:00 Heat of formation + Delta-G solvation = -82.886015 kcal Electronic energy + Delta-G solvation = -26963.277817 eV Core-core repulsion = 23007.808033 eV Total energy + Delta-G solvation = -3955.469784 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.75229 -39.42361 -37.21565 -36.20968 -35.95897 -34.00015 -33.49278 -32.38393 -31.47743 -31.02616 -28.10645 -27.64415 -26.91564 -23.30047 -23.02472 -22.33386 -21.37645 -20.19968 -19.28630 -18.17849 -18.06779 -16.71898 -16.46138 -16.07352 -15.91264 -15.71891 -15.16310 -14.84939 -14.72266 -14.56285 -14.34695 -13.97899 -13.84861 -13.77675 -13.15067 -12.95453 -12.88668 -12.82644 -12.74585 -12.47079 -12.16772 -12.10927 -12.08112 -11.89643 -11.79622 -11.58534 -11.28136 -11.08748 -10.86254 -10.84944 -10.67554 -10.23868 -9.51811 -9.47482 -9.40632 -9.27797 -8.90327 -8.64953 -7.71359 -6.08476 -4.14186 -0.19686 0.41992 0.87438 2.69927 3.01718 3.19710 3.29671 3.36816 3.40853 3.68468 3.90998 3.92376 4.21288 4.26430 4.28389 4.39309 4.48813 4.53106 4.84241 4.87438 4.99543 5.02850 5.12487 5.16236 5.17320 5.25292 5.27817 5.30304 5.45931 5.52341 5.64942 5.68281 5.72788 5.87925 5.99117 6.18847 6.41218 6.73641 7.14466 7.57500 7.61063 7.64993 7.94681 8.09949 8.83524 8.98390 9.36560 9.53915 11.01921 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017547 B = 0.002448 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.290849 B =11434.070306 C =12357.166857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.035 4.035 3 C -0.144 4.144 4 C -0.021 4.021 5 C -0.669 4.669 6 S 2.496 3.504 7 O -0.930 6.930 8 O -0.922 6.922 9 C -0.618 4.618 10 C 0.172 3.828 11 H 0.105 0.895 12 C -0.154 4.154 13 N -0.767 5.767 14 C 0.696 3.304 15 O -0.597 6.597 16 N -0.724 5.724 17 C 0.265 3.735 18 C -0.539 4.539 19 H 0.064 0.936 20 C 0.062 3.938 21 N -0.886 5.886 22 Si 0.905 3.095 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.283 1.283 26 C -0.019 4.019 27 C -0.143 4.143 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.132 0.868 32 H 0.142 0.858 33 H 0.141 0.859 34 H 0.149 0.851 35 H 0.074 0.926 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.399 0.601 39 H 0.389 0.611 40 H 0.026 0.974 41 H 0.026 0.974 42 H 0.264 0.736 43 H 0.144 0.856 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.004 6.012 8.820 31.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.035 4.035 3 C -0.163 4.163 4 C -0.040 4.040 5 C -0.754 4.754 6 S 2.675 3.325 7 O -0.927 6.927 8 O -0.919 6.919 9 C -0.748 4.748 10 C 0.065 3.935 11 H 0.123 0.877 12 C -0.214 4.214 13 N -0.428 5.428 14 C 0.396 3.604 15 O -0.476 6.476 16 N -0.376 5.376 17 C 0.144 3.856 18 C -0.578 4.578 19 H 0.082 0.918 20 C -0.141 4.141 21 N -0.524 5.524 22 Si 0.732 3.268 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.209 1.209 26 C -0.037 4.037 27 C -0.162 4.162 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.150 0.850 32 H 0.160 0.840 33 H 0.159 0.841 34 H 0.167 0.833 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.234 0.766 39 H 0.222 0.778 40 H 0.044 0.956 41 H 0.044 0.956 42 H 0.074 0.926 43 H 0.162 0.838 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -28.605 6.961 8.108 30.536 hybrid contribution -0.996 -1.609 0.114 1.896 sum -29.602 5.352 8.222 31.185 Atomic orbital electron populations 1.20946 0.90575 1.03437 1.03079 1.20300 0.96527 0.93375 0.93293 1.21197 0.94168 0.98041 1.02845 1.21000 0.94743 0.96813 0.91408 1.30766 1.26562 0.99481 1.18629 1.05610 0.73838 0.75305 0.77712 1.93585 1.81815 1.44675 1.72638 1.93586 1.81515 1.44136 1.72621 1.30692 1.05652 1.12808 1.25618 1.20309 0.86573 0.90479 0.96126 0.87738 1.22145 1.03530 1.01921 0.93818 1.45537 1.14793 1.16536 1.65911 1.16083 0.80818 0.84761 0.78777 1.90878 1.59100 1.33626 1.64027 1.45719 1.17611 1.13075 1.61159 1.19026 0.74881 0.97344 0.94354 1.21278 0.98722 0.98243 1.39518 0.91802 1.24950 0.95934 0.97444 0.95816 1.69992 1.04892 1.32746 1.44727 0.86350 0.78319 0.83273 0.78871 1.19648 1.20844 1.20902 1.21009 0.94721 0.96832 0.91184 1.21209 0.94211 0.98046 1.02752 0.90295 0.90908 0.90932 0.85007 0.83985 0.84100 0.83311 0.90706 0.92212 0.91637 0.76640 0.77823 0.95577 0.95612 0.92583 0.83822 0.84974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.50 10.01 36.01 0.36 -0.14 16 2 C -0.03 -0.24 5.88 -104.62 -0.62 -0.85 16 3 C -0.14 -1.05 9.70 -39.58 -0.38 -1.43 16 4 C -0.02 -0.18 9.47 -39.58 -0.37 -0.56 16 5 C -0.67 -6.46 5.66 -39.58 -0.22 -6.68 16 6 S 2.50 29.12 4.94 -107.50 -0.53 28.59 16 7 O -0.93 -14.18 17.13 -57.54 -0.99 -15.16 16 8 O -0.92 -13.38 15.86 -57.54 -0.91 -14.29 16 9 C -0.62 -4.99 5.54 37.16 0.21 -4.79 16 10 C 0.17 2.17 2.63 -67.93 -0.18 2.00 16 11 H 0.10 1.52 7.58 -51.93 -0.39 1.13 16 12 C -0.15 -1.69 9.49 37.16 0.35 -1.34 16 13 N -0.77 -11.92 4.21 -58.68 -0.25 -12.16 16 14 C 0.70 14.94 8.53 -86.93 -0.74 14.20 16 15 O -0.60 -15.11 16.01 5.29 0.08 -15.02 16 16 N -0.72 -16.37 5.55 -66.42 -0.37 -16.74 16 17 C 0.26 7.34 5.43 -5.20 -0.03 7.31 16 18 C -0.54 -15.14 9.28 -34.44 -0.32 -15.46 16 19 H 0.06 1.69 7.60 -52.49 -0.40 1.29 16 20 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 21 N -0.89 -26.72 13.29 55.43 0.74 -25.99 16 22 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 23 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 26 C -0.02 -0.16 9.47 -39.58 -0.37 -0.54 16 27 C -0.14 -1.05 9.70 -39.59 -0.38 -1.44 16 28 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.07 0.23 8.09 -51.93 -0.42 -0.19 16 30 H 0.07 0.22 8.08 -51.93 -0.42 -0.20 16 31 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 32 H 0.14 1.07 7.57 -52.49 -0.40 0.67 16 33 H 0.14 0.71 8.14 -51.92 -0.42 0.29 16 34 H 0.15 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.40 5.12 7.94 -40.82 -0.32 4.79 16 39 H 0.39 7.65 8.34 -40.82 -0.34 7.31 16 40 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 43 H 0.14 1.07 7.56 -52.49 -0.40 0.67 16 44 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 LS Contribution 386.39 15.07 5.82 5.82 Total: -1.00 -39.15 386.39 -10.68 -49.82 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -6.45 Total: 6.74 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: -2.80 Total: -8.04 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: 0.12 Total: -54.88 kcal Atomic # 8 Polarization: -42.66 SS G_CDS: -1.81 Total: -44.47 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: 29.12 SS G_CDS: -0.53 Total: 28.59 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -39.15 -10.68 -49.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426415137.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.061 kcal (2) G-P(sol) polarization free energy of solvation -39.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds