Wall clock time and date at job start Sat Apr 11 2020 05:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38234 * 119.99802 * 2 1 4 4 C 1.38237 * 120.00245 * 179.97438 * 3 2 1 5 5 C 1.38238 * 119.99447 * 359.95267 * 4 3 2 6 6 S 1.76199 * 119.99605 * 179.97438 * 5 4 3 7 7 O 1.42099 * 104.27929 * 333.93398 * 6 5 4 8 8 O 1.42101 * 104.27799 * 206.07071 * 6 5 4 9 9 C 1.81404 * 104.44592 * 90.00420 * 6 5 4 10 10 C 1.53006 * 109.47098 * 179.97438 * 9 6 5 11 11 H 1.08998 * 109.46505 * 59.99714 * 10 9 6 12 12 C 1.52997 * 109.47127 * 179.97438 * 10 9 6 13 13 N 1.46500 * 109.47249 * 300.00353 * 10 9 6 14 14 C 1.34768 * 120.00056 * 154.99998 * 13 10 9 15 15 O 1.21588 * 120.00059 * 359.97438 * 14 13 10 16 16 N 1.34776 * 120.00197 * 179.97438 * 14 13 10 17 17 C 1.46500 * 120.00480 * 179.97438 * 16 14 13 18 18 C 1.50697 * 109.47447 * 179.97438 * 17 16 14 19 19 H 1.08000 * 119.99962 * 0.02562 * 18 17 16 20 20 C 1.37882 * 120.00192 * 179.97438 * 18 17 16 21 21 N 1.31513 * 119.99711 * 0.02562 * 20 18 17 22 22 Si 1.86791 * 120.00014 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47552 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47214 * 120.00259 * 22 20 18 25 25 H 1.48499 * 109.47317 * 240.00092 * 22 20 18 26 26 C 1.38235 * 120.00125 * 0.27963 * 5 4 3 27 27 C 1.38231 * 120.00084 * 359.51171 * 26 5 4 28 28 H 1.09004 * 109.46873 * 90.00234 * 1 2 3 29 29 H 1.09000 * 109.47058 * 210.00054 * 1 2 3 30 30 H 1.08992 * 109.47520 * 330.00339 * 1 2 3 31 31 H 1.08004 * 119.99982 * 359.97002 * 3 2 1 32 32 H 1.07993 * 120.00176 * 179.97438 * 4 3 2 33 33 H 1.09001 * 109.46975 * 59.99940 * 9 6 5 34 34 H 1.08993 * 109.47080 * 299.99443 * 9 6 5 35 35 H 1.09002 * 109.47153 * 180.02562 * 12 10 9 36 36 H 1.09001 * 109.46832 * 60.00321 * 12 10 9 37 37 H 1.09004 * 109.47261 * 300.00303 * 12 10 9 38 38 H 0.97001 * 119.99547 * 334.99826 * 13 10 9 39 39 H 0.97001 * 119.99928 * 359.97438 * 16 14 13 40 40 H 1.09001 * 109.46909 * 300.00175 * 17 16 14 41 41 H 1.09004 * 109.47111 * 59.99913 * 17 16 14 42 42 H 0.96998 * 119.99844 * 179.97438 * 21 20 18 43 43 H 1.08001 * 119.99658 * 179.72554 * 26 5 4 44 44 H 1.07998 * 120.00427 * 180.25570 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 0.0001 0.0021 6 16 6.0337 0.0002 0.0021 7 8 6.3841 1.2364 -0.6046 8 8 6.3842 -1.2376 -0.6016 9 6 6.4862 0.0023 1.7587 10 6 8.0104 0.0019 1.8928 11 1 8.4176 0.8911 1.4115 12 6 8.3921 0.0043 3.3744 13 7 8.5569 -1.1953 1.2491 14 6 9.8239 -1.1945 0.7898 15 8 10.5133 -0.2001 0.9092 16 7 10.3269 -2.2960 0.1981 17 6 11.7040 -2.2951 -0.3017 18 6 12.0176 -3.6364 -0.9129 19 1 11.2661 -4.4119 -0.9280 20 6 13.2635 -3.8733 -1.4539 21 7 14.1785 -2.9287 -1.4360 22 14 13.6519 -5.5356 -2.2121 23 1 12.4618 -6.4177 -2.1075 24 1 14.0101 -5.3559 -3.6421 25 1 14.7924 -6.1547 -1.4902 26 6 3.5805 -1.1971 -0.0028 27 6 2.1982 -1.1971 0.0010 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5137 31 1 1.6581 2.1325 -0.0005 32 1 4.1205 2.1325 0.0001 33 1 6.0793 -0.8871 2.2398 34 1 6.0794 0.8928 2.2376 35 1 9.4779 0.0045 3.4698 36 1 7.9848 -0.8847 3.8559 37 1 7.9855 0.8953 3.8529 38 1 8.0068 -1.9885 1.1535 39 1 9.7771 -3.0895 0.1031 40 1 11.8162 -1.5164 -1.0562 41 1 12.3899 -2.1030 0.5234 42 1 15.0551 -3.0955 -1.8162 43 1 4.1206 -2.1323 -0.0061 44 1 1.6582 -2.1324 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426415137.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:59 Heat of formation + Delta-G solvation = -113.485613 kcal Electronic energy + Delta-G solvation = -26964.604715 eV Core-core repulsion = 23007.808033 eV Total energy + Delta-G solvation = -3956.796682 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.07675 -40.29961 -38.22549 -37.53381 -36.99069 -36.02525 -34.42962 -33.99774 -32.44241 -32.03766 -29.07741 -28.81257 -28.15145 -24.93767 -23.86057 -23.14123 -22.54451 -21.82391 -20.20842 -19.87628 -18.86062 -18.13644 -17.78941 -17.33991 -17.02751 -16.65266 -16.37669 -16.29627 -15.94225 -15.55785 -15.35506 -15.12571 -14.76794 -14.51559 -14.44649 -14.38274 -14.02383 -13.81328 -13.66312 -13.26271 -13.21165 -13.11185 -13.08363 -13.06782 -13.03069 -12.84344 -12.74437 -12.24988 -12.20752 -12.09487 -11.93327 -11.48969 -11.44151 -11.28191 -10.80942 -10.40200 -10.05910 -10.05122 -9.66966 -8.27625 -6.43719 -1.03345 -0.20833 0.30363 1.43304 1.45638 1.58677 1.76218 1.89889 2.17905 2.39941 2.40411 2.86996 3.07057 3.08737 3.31886 3.47685 3.73644 3.86144 3.86802 3.96088 4.13419 4.28114 4.36019 4.39773 4.55857 4.67119 4.70716 4.75224 4.80193 4.90631 5.01476 5.09183 5.09983 5.10285 5.25100 5.27161 5.28393 5.43538 5.49071 5.49778 5.65659 5.85337 5.88201 6.19224 6.67523 7.22557 7.26790 7.66417 8.85080 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017547 B = 0.002448 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.290849 B =11434.070306 C =12357.166857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.036 4.036 3 C -0.148 4.148 4 C -0.038 4.038 5 C -0.670 4.670 6 S 2.481 3.519 7 O -0.982 6.982 8 O -0.964 6.964 9 C -0.588 4.588 10 C 0.156 3.844 11 H 0.078 0.922 12 C -0.150 4.150 13 N -0.747 5.747 14 C 0.693 3.307 15 O -0.641 6.641 16 N -0.723 5.723 17 C 0.283 3.717 18 C -0.554 4.554 19 H 0.083 0.917 20 C 0.002 3.998 21 N -0.930 5.930 22 Si 0.988 3.012 23 H -0.254 1.254 24 H -0.279 1.279 25 H -0.276 1.276 26 C -0.034 4.034 27 C -0.148 4.148 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.155 0.845 32 H 0.146 0.854 33 H 0.185 0.815 34 H 0.193 0.807 35 H 0.038 0.962 36 H 0.085 0.915 37 H 0.099 0.901 38 H 0.415 0.585 39 H 0.405 0.595 40 H -0.016 1.016 41 H -0.009 1.009 42 H 0.269 0.731 43 H 0.151 0.849 44 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.570 4.307 10.175 35.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.036 4.036 3 C -0.167 4.167 4 C -0.057 4.057 5 C -0.759 4.759 6 S 2.668 3.332 7 O -0.979 6.979 8 O -0.961 6.961 9 C -0.720 4.720 10 C 0.050 3.950 11 H 0.096 0.904 12 C -0.209 4.209 13 N -0.407 5.407 14 C 0.392 3.608 15 O -0.524 6.524 16 N -0.376 5.376 17 C 0.160 3.840 18 C -0.592 4.592 19 H 0.101 0.899 20 C -0.198 4.198 21 N -0.569 5.569 22 Si 0.811 3.189 23 H -0.177 1.177 24 H -0.205 1.205 25 H -0.201 1.201 26 C -0.052 4.052 27 C -0.167 4.167 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.173 0.827 32 H 0.163 0.837 33 H 0.202 0.798 34 H 0.210 0.790 35 H 0.057 0.943 36 H 0.103 0.897 37 H 0.118 0.882 38 H 0.252 0.748 39 H 0.240 0.760 40 H 0.002 0.998 41 H 0.009 0.991 42 H 0.078 0.922 43 H 0.168 0.832 44 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -32.236 5.241 9.459 34.002 hybrid contribution -0.028 -0.979 -0.236 1.007 sum -32.265 4.263 9.223 33.827 Atomic orbital electron populations 1.21022 0.88402 1.04718 1.03805 1.20708 0.98166 0.92975 0.91724 1.21529 0.93628 0.99455 1.02076 1.21210 0.95734 0.96715 0.92052 1.30266 1.24381 1.00457 1.20838 1.05506 0.74751 0.73641 0.79329 1.93523 1.83167 1.46124 1.75087 1.93530 1.82732 1.44980 1.74817 1.30516 1.02047 1.17219 1.22249 1.20636 0.89352 0.88041 0.96950 0.90419 1.22125 1.01477 1.04905 0.92432 1.45379 1.12531 1.18314 1.64525 1.16273 0.82367 0.83635 0.78485 1.90842 1.60907 1.35077 1.65536 1.45355 1.16210 1.14391 1.61621 1.18463 0.76974 0.96541 0.92025 1.21631 0.99576 0.98393 1.39632 0.89916 1.26093 0.95577 1.02056 0.96031 1.70152 1.05564 1.35515 1.45651 0.85066 0.78666 0.77616 0.77554 1.17750 1.20505 1.20148 1.21232 0.95645 0.96737 0.91635 1.21547 0.93742 0.99412 1.02006 0.89661 0.89689 0.89697 0.82715 0.83661 0.79775 0.78987 0.94318 0.89652 0.88249 0.74755 0.75955 0.99826 0.99071 0.92223 0.83165 0.82688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.58 10.01 71.24 0.71 0.14 16 2 C -0.04 -0.39 5.88 -19.86 -0.12 -0.50 16 3 C -0.15 -1.82 9.70 22.27 0.22 -1.61 16 4 C -0.04 -0.62 9.47 22.27 0.21 -0.41 16 5 C -0.67 -12.28 5.66 22.27 0.13 -12.16 16 6 S 2.48 57.84 4.94 -56.49 -0.28 57.56 16 7 O -0.98 -31.50 17.13 -127.65 -2.19 -33.68 16 8 O -0.96 -28.55 15.86 -127.65 -2.02 -30.58 16 9 C -0.59 -7.90 5.54 71.98 0.40 -7.50 16 10 C 0.16 3.79 2.63 44.99 0.12 3.91 16 11 H 0.08 2.34 7.58 -2.39 -0.02 2.33 16 12 C -0.15 -2.97 9.49 71.98 0.68 -2.29 16 13 N -0.75 -23.16 4.21 -457.82 -1.93 -25.09 16 14 C 0.69 30.99 8.53 179.06 1.53 32.52 16 15 O -0.64 -34.47 16.01 -3.99 -0.06 -34.54 16 16 N -0.72 -33.90 5.55 -482.30 -2.68 -36.57 16 17 C 0.28 16.57 5.43 85.63 0.46 17.03 16 18 C -0.55 -31.70 9.28 25.60 0.24 -31.46 16 19 H 0.08 4.31 7.60 -2.91 -0.02 4.29 16 20 C 0.00 0.11 5.46 84.66 0.46 0.57 16 21 N -0.93 -57.86 13.29 21.45 0.28 -57.58 16 22 Si 0.99 43.93 29.54 68.60 2.03 45.96 16 23 H -0.25 -10.48 7.11 99.48 0.71 -9.77 16 24 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 25 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 26 C -0.03 -0.53 9.47 22.27 0.21 -0.32 16 27 C -0.15 -1.80 9.70 22.27 0.22 -1.58 16 28 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.08 0.22 8.09 -2.39 -0.02 0.20 16 30 H 0.08 0.21 8.08 -2.39 -0.02 0.19 16 31 H 0.16 1.07 8.06 -2.91 -0.02 1.05 16 32 H 0.15 2.14 7.57 -2.91 -0.02 2.12 16 33 H 0.18 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.19 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 38 H 0.41 10.21 7.94 -92.71 -0.74 9.47 16 39 H 0.41 16.09 8.34 -92.71 -0.77 15.32 16 40 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 41 H -0.01 -0.56 8.14 -2.38 -0.02 -0.58 16 42 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 43 H 0.15 2.04 7.56 -2.91 -0.02 2.02 16 44 H 0.16 1.07 8.06 -2.91 -0.02 1.04 16 Total: -1.00 -91.84 386.39 -1.86 -93.70 By element: Atomic # 1 Polarization: 24.97 SS G_CDS: -0.48 Total: 24.48 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: 5.47 Total: -3.67 kcal Atomic # 7 Polarization: -114.92 SS G_CDS: -4.32 Total: -119.24 kcal Atomic # 8 Polarization: -94.52 SS G_CDS: -4.27 Total: -98.79 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Atomic # 16 Polarization: 57.84 SS G_CDS: -0.28 Total: 57.56 kcal Total: -91.84 -1.86 -93.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426415137.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.783 kcal (2) G-P(sol) polarization free energy of solvation -91.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds