Wall clock time and date at job start Sat Apr 11 2020 05:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31839 * 119.05602 * 2 1 4 4 C 1.32408 * 121.05440 * 180.02562 * 3 2 1 5 5 C 1.38376 * 119.18978 * 359.97438 * 4 3 2 6 6 C 1.39702 * 118.28790 * 359.97438 * 5 4 3 7 7 C 1.48312 * 120.55168 * 179.97438 * 6 5 4 8 8 C 1.39441 * 120.08829 * 5.00762 * 7 6 5 9 9 C 1.38044 * 120.02640 * 179.74556 * 8 7 6 10 10 C 1.38209 * 120.20589 * 359.95230 * 9 8 7 11 11 C 1.38984 * 120.17869 * 0.02562 * 10 9 8 12 12 N 1.39748 * 120.01318 * 180.02562 * 11 10 9 13 13 C 1.34775 * 119.99801 * 144.89464 * 12 11 10 14 14 O 1.21368 * 120.00162 * 4.60409 * 13 12 11 15 15 C 1.49359 * 119.99545 * 184.61510 * 13 12 11 16 16 O 1.21360 * 120.00034 * 359.97438 * 15 13 12 17 17 N 1.34775 * 119.99545 * 179.97438 * 15 13 12 18 18 C 1.46503 * 119.99824 * 179.97438 * 17 15 13 19 19 C 1.50702 * 109.47326 * 179.97438 * 18 17 15 20 20 H 1.07996 * 119.99769 * 0.02562 * 19 18 17 21 21 C 1.37874 * 119.99873 * 179.97438 * 19 18 17 22 22 N 1.31516 * 119.99549 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 120.00320 * 359.97438 * 21 19 18 24 24 H 1.48505 * 109.46713 * 89.99896 * 23 21 19 25 25 H 1.48494 * 109.47402 * 209.99911 * 23 21 19 26 26 H 1.48498 * 109.47424 * 330.00607 * 23 21 19 27 27 C 1.38733 * 119.97281 * 0.06193 * 11 10 9 28 28 N 1.31647 * 119.05876 * 180.25423 * 2 1 3 29 29 H 1.09006 * 109.47084 * 90.00408 * 1 2 3 30 30 H 1.08999 * 109.47026 * 209.99738 * 1 2 3 31 31 H 1.09004 * 109.47580 * 330.00155 * 1 2 3 32 32 H 1.08008 * 120.40821 * 180.02562 * 4 3 2 33 33 H 1.07998 * 120.85465 * 179.97438 * 5 4 3 34 34 H 1.07996 * 119.98924 * 359.71792 * 8 7 6 35 35 H 1.08006 * 119.89344 * 179.97438 * 9 8 7 36 36 H 1.07997 * 119.90906 * 180.02562 * 10 9 8 37 37 H 0.97001 * 119.99604 * 324.88791 * 12 11 10 38 38 H 0.97000 * 120.00382 * 359.97438 * 17 15 13 39 39 H 1.09000 * 109.46827 * 299.99364 * 18 17 15 40 40 H 1.08997 * 109.47113 * 59.99055 * 18 17 15 41 41 H 0.96998 * 119.99540 * 179.97438 * 22 21 19 42 42 H 1.07994 * 120.10767 * 179.97438 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1473 1.1525 0.0000 4 6 3.4706 1.1986 -0.0005 5 6 4.1871 0.0149 -0.0005 6 6 3.4776 -1.1885 0.0006 7 6 4.1949 -2.4867 0.0001 8 6 5.5851 -2.5172 0.1038 9 6 6.2511 -3.7264 0.1085 10 6 5.5441 -4.9100 0.0115 11 6 4.1582 -4.8895 -0.0918 12 7 3.4468 -6.0884 -0.1891 13 6 2.2347 -6.2015 0.3894 14 8 1.7245 -5.2380 0.9226 15 6 1.5196 -7.5127 0.3743 16 8 2.0297 -8.4760 -0.1592 17 7 0.3078 -7.6259 0.9532 18 6 -0.3940 -8.9119 0.9379 19 6 -1.7166 -8.7709 1.6464 20 1 -2.0057 -7.8186 2.0657 21 6 -2.5579 -9.8574 1.7584 22 7 -3.7118 -9.7344 2.3772 23 14 -2.0587 -11.5041 1.0313 24 1 -1.3148 -12.2893 2.0488 25 1 -3.2737 -12.2522 0.6198 26 1 -1.1908 -11.2799 -0.1525 27 6 3.4815 -3.6784 -0.0990 28 7 2.1464 -1.1507 -0.0051 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 3.9844 2.1486 -0.0001 33 1 5.2671 0.0212 -0.0013 34 1 6.1411 -1.5945 0.1801 35 1 7.3280 -3.7475 0.1885 36 1 6.0699 -5.8533 0.0161 37 1 3.8253 -6.8390 -0.6730 38 1 -0.0998 -6.8561 1.3799 39 1 -0.5650 -9.2202 -0.0935 40 1 0.2118 -9.6624 1.4458 41 1 -4.3039 -10.4988 2.4556 42 1 2.4048 -3.6600 -0.1796 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427882090.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:04 Heat of formation + Delta-G solvation = 11.612330 kcal Electronic energy + Delta-G solvation = -27469.537721 eV Core-core repulsion = 23415.014492 eV Total energy + Delta-G solvation = -4054.523228 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.40871 -40.84453 -39.25387 -37.99941 -35.58872 -34.55034 -34.02838 -33.58707 -32.41944 -30.82676 -30.17926 -28.62386 -28.33194 -25.24237 -25.06633 -23.47083 -22.71770 -21.90235 -21.12389 -20.06866 -18.85302 -17.86591 -17.74561 -16.95086 -16.70097 -16.21044 -15.86441 -15.74540 -15.46943 -15.25575 -15.15440 -14.77875 -14.31784 -14.05174 -13.99127 -13.59810 -13.44059 -13.31206 -13.22694 -12.75039 -12.55313 -12.46673 -12.29992 -12.21954 -11.84582 -11.40246 -11.25341 -11.10381 -10.97416 -10.85129 -10.53131 -10.04978 -9.91899 -9.58012 -9.50827 -9.30631 -8.89054 -8.87606 -8.46603 -8.39948 -6.26414 -4.30388 0.11524 0.70173 0.96739 1.42435 1.74403 2.49258 3.21798 3.26016 3.29290 3.34800 3.48822 3.53744 3.72804 3.77707 3.89657 4.12059 4.27163 4.54985 4.58749 4.67936 4.83377 4.87455 4.90197 5.07705 5.07837 5.12347 5.23324 5.26176 5.37349 5.50413 5.67635 5.74681 5.94677 6.01587 6.08353 6.19435 6.22278 6.56845 6.67436 6.77792 6.82982 6.89469 7.02575 7.23045 7.66628 7.86447 7.97946 8.32654 8.44088 8.73776 9.30838 10.85347 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013204 B = 0.002469 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.019777 B =11339.675416 C =13285.908451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.326 3.674 3 N -0.527 5.527 4 C 0.153 3.847 5 C -0.231 4.231 6 C 0.227 3.773 7 C -0.049 4.049 8 C -0.107 4.107 9 C -0.105 4.105 10 C -0.122 4.122 11 C 0.140 3.860 12 N -0.652 5.652 13 C 0.508 3.492 14 O -0.493 6.493 15 C 0.495 3.505 16 O -0.538 6.538 17 N -0.663 5.663 18 C 0.218 3.782 19 C -0.549 4.549 20 H 0.083 0.917 21 C 0.080 3.920 22 N -0.888 5.888 23 Si 0.877 3.123 24 H -0.272 1.272 25 H -0.282 1.282 26 H -0.261 1.261 27 C -0.073 4.073 28 N -0.507 5.507 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.170 0.830 33 H 0.149 0.851 34 H 0.129 0.871 35 H 0.134 0.866 36 H 0.133 0.867 37 H 0.424 0.576 38 H 0.411 0.589 39 H 0.034 0.966 40 H 0.029 0.971 41 H 0.269 0.731 42 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.637 19.070 -6.458 28.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.059 3.941 3 N -0.242 5.242 4 C -0.012 4.012 5 C -0.253 4.253 6 C 0.082 3.918 7 C -0.050 4.050 8 C -0.127 4.127 9 C -0.124 4.124 10 C -0.143 4.143 11 C 0.046 3.954 12 N -0.299 5.299 13 C 0.290 3.710 14 O -0.366 6.366 15 C 0.273 3.727 16 O -0.418 6.418 17 N -0.312 5.312 18 C 0.096 3.904 19 C -0.586 4.586 20 H 0.101 0.899 21 C -0.125 4.125 22 N -0.524 5.524 23 Si 0.703 3.297 24 H -0.197 1.197 25 H -0.208 1.208 26 H -0.185 1.185 27 C -0.094 4.094 28 N -0.221 5.221 29 H 0.105 0.895 30 H 0.109 0.891 31 H 0.105 0.895 32 H 0.187 0.813 33 H 0.167 0.833 34 H 0.147 0.853 35 H 0.152 0.848 36 H 0.151 0.849 37 H 0.262 0.738 38 H 0.247 0.753 39 H 0.051 0.949 40 H 0.047 0.953 41 H 0.079 0.921 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 19.305 18.916 -6.357 27.766 hybrid contribution 1.184 -0.897 -0.270 1.509 sum 20.489 18.019 -6.627 28.079 Atomic orbital electron populations 1.20628 0.85361 1.04586 1.04103 1.23303 0.98350 0.82961 0.89473 1.68263 1.10270 1.30476 1.15201 1.23154 0.89632 0.98481 0.89964 1.22817 1.02840 0.93792 1.05871 1.20124 0.89245 0.92695 0.89761 1.18256 0.92488 0.90377 1.03926 1.21169 0.92632 0.98630 1.00258 1.20829 1.00027 0.91258 1.00290 1.21141 0.92165 0.99544 1.01451 1.17707 0.90951 0.85634 1.01091 1.43177 1.18489 1.14591 1.53677 1.20804 0.81658 0.90117 0.78410 1.90789 1.65022 1.38912 1.41831 1.19684 0.83577 0.87634 0.81771 1.90726 1.66764 1.38883 1.45387 1.46125 1.16217 1.16198 1.52655 1.19726 0.92408 0.80208 0.98020 1.21044 1.00226 0.99497 1.37863 0.89879 1.24780 0.94478 0.98920 0.94300 1.69876 1.09600 1.31586 1.41383 0.86823 0.78622 0.83733 0.80538 1.19747 1.20753 1.18493 1.21557 1.02403 0.89303 0.96129 1.68335 1.08843 1.30545 1.14363 0.89457 0.89070 0.89519 0.81340 0.83340 0.85316 0.84849 0.84934 0.73783 0.75313 0.94862 0.95340 0.92109 0.82515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.84 10.32 36.01 0.37 -0.47 16 2 C 0.33 3.96 7.64 -157.28 -1.20 2.76 16 3 N -0.53 -5.89 10.32 -10.78 -0.11 -6.01 16 4 C 0.15 1.30 11.30 -17.25 -0.19 1.10 16 5 C -0.23 -1.96 9.53 -38.98 -0.37 -2.33 16 6 C 0.23 2.66 6.75 -82.59 -0.56 2.10 16 7 C -0.05 -0.56 5.87 -104.93 -0.62 -1.17 16 8 C -0.11 -0.88 9.44 -39.20 -0.37 -1.25 16 9 C -0.11 -0.79 10.03 -39.66 -0.40 -1.18 16 10 C -0.12 -1.09 9.96 -39.32 -0.39 -1.49 16 11 C 0.14 1.69 6.29 -83.79 -0.53 1.16 16 12 N -0.65 -8.37 5.32 -10.32 -0.05 -8.43 16 13 C 0.51 8.21 7.73 -11.63 -0.09 8.12 16 14 O -0.49 -8.83 13.91 5.48 0.08 -8.75 16 15 C 0.49 9.29 7.89 -11.63 -0.09 9.19 16 16 O -0.54 -10.91 16.48 5.49 0.09 -10.82 16 17 N -0.66 -13.64 5.54 -61.94 -0.34 -13.98 16 18 C 0.22 5.18 4.50 -5.19 -0.02 5.16 16 19 C -0.55 -14.86 9.83 -34.44 -0.34 -15.20 16 20 H 0.08 2.38 7.84 -52.49 -0.41 1.97 16 21 C 0.08 2.21 5.47 -17.82 -0.10 2.12 16 22 N -0.89 -26.07 13.96 55.43 0.77 -25.29 16 23 Si 0.88 20.77 27.47 -169.99 -4.67 16.10 16 24 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.26 -6.04 6.54 56.52 0.37 -5.67 16 27 C -0.07 -0.98 8.24 -39.02 -0.32 -1.30 16 28 N -0.51 -6.87 9.50 -7.30 -0.07 -6.94 16 29 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.17 0.77 8.06 -52.48 -0.42 0.35 16 33 H 0.15 0.74 6.35 -52.49 -0.33 0.41 16 34 H 0.13 0.67 6.29 -52.49 -0.33 0.34 16 35 H 0.13 0.60 8.06 -52.48 -0.42 0.18 16 36 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 37 H 0.42 4.62 8.30 -40.82 -0.34 4.28 16 38 H 0.41 8.10 7.79 -40.82 -0.32 7.78 16 39 H 0.03 0.82 7.20 -51.93 -0.37 0.44 16 40 H 0.03 0.69 7.57 -51.93 -0.39 0.30 16 41 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 42 H 0.16 2.49 5.75 -52.49 -0.30 2.19 16 LS Contribution 368.01 15.07 5.55 5.55 Total: -1.00 -33.76 368.01 -8.49 -42.24 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -4.50 Total: 9.00 kcal Atomic # 6 Polarization: 12.55 SS G_CDS: -5.22 Total: 7.33 kcal Atomic # 7 Polarization: -60.84 SS G_CDS: 0.19 Total: -60.64 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: 0.17 Total: -19.57 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.67 Total: 16.10 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.76 -8.49 -42.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427882090.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.857 kcal (2) G-P(sol) polarization free energy of solvation -33.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds