Wall clock time and date at job start Sat Apr 11 2020 05:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34228 * 116.99950 * 2 1 4 4 O 1.20829 * 120.00024 * 0.02562 * 3 2 1 5 5 C 1.50695 * 119.99688 * 179.97438 * 3 2 1 6 6 N 1.46501 * 109.47120 * 180.02562 * 5 3 2 7 7 C 1.37105 * 119.99840 * 264.27049 * 6 5 3 8 8 H 1.08000 * 120.00085 * 196.54391 * 7 6 5 9 9 C 1.38949 * 119.99818 * 16.53314 * 7 6 5 10 10 N 1.31412 * 120.00052 * 21.52403 * 9 7 6 11 11 Si 1.86797 * 120.00144 * 201.52459 * 9 7 6 12 12 H 1.48507 * 109.46970 * 59.99888 * 11 9 7 13 13 H 1.48496 * 109.47356 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.46961 * 300.00534 * 11 9 7 15 15 C 1.34771 * 120.00454 * 83.98919 * 6 5 3 16 16 O 1.21292 * 119.99776 * 0.02562 * 15 6 5 17 17 C 1.50697 * 120.00116 * 180.02562 * 15 6 5 18 18 C 1.50703 * 109.47261 * 180.02562 * 17 15 6 19 19 N 1.29027 * 124.91767 * 89.99616 * 18 17 15 20 20 C 1.31781 * 117.12605 * 179.97438 * 19 18 17 21 21 C 1.50696 * 122.75177 * 180.02562 * 20 19 18 22 22 C 1.52992 * 109.47163 * 299.97327 * 21 20 19 23 23 C 1.53001 * 109.46975 * 59.97623 * 21 20 19 24 24 C 1.33646 * 114.50110 * 359.97438 * 20 19 18 25 25 C 1.50692 * 126.03910 * 179.97438 * 24 20 19 26 26 S 1.70980 * 124.91433 * 269.69611 * 18 17 15 27 27 H 1.09004 * 109.47421 * 300.00271 * 1 2 3 28 28 H 1.09003 * 109.47075 * 60.00089 * 1 2 3 29 29 H 1.09005 * 109.47483 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47516 * 60.00050 * 5 3 2 31 31 H 1.09003 * 109.47477 * 299.99816 * 5 3 2 32 32 H 0.97005 * 120.00029 * 179.97438 * 10 9 7 33 33 H 1.09000 * 109.47478 * 299.99758 * 17 15 6 34 34 H 1.08997 * 109.47342 * 60.00344 * 17 15 6 35 35 H 1.09005 * 109.47002 * 179.97438 * 21 20 19 36 36 H 1.09005 * 109.47410 * 179.97438 * 22 21 20 37 37 H 1.09010 * 109.47334 * 300.00022 * 22 21 20 38 38 H 1.09001 * 109.47534 * 59.99877 * 22 21 20 39 39 H 1.08998 * 109.47450 * 60.00000 * 23 21 20 40 40 H 1.09005 * 109.47010 * 180.02562 * 23 21 20 41 41 H 1.09001 * 109.46648 * 299.99465 * 23 21 20 42 42 H 1.09003 * 109.47437 * 90.00356 * 25 24 20 43 43 H 1.09006 * 109.47500 * 209.99805 * 25 24 20 44 44 H 1.09000 * 109.47256 * 330.00054 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9817 2.6797 0.0011 7 6 4.2902 3.3037 -1.1801 8 1 4.8430 4.2315 -1.1724 9 6 3.8919 2.7423 -2.3871 10 7 2.8949 1.8867 -2.4166 11 14 4.7738 3.2036 -3.9679 12 1 6.2091 2.8385 -3.8587 13 1 4.1621 2.4735 -5.1072 14 1 4.6509 4.6661 -4.1945 15 6 4.0552 3.3603 1.1620 16 8 3.7778 2.8096 2.2064 17 6 4.4820 4.8056 1.1623 18 6 4.4820 5.3291 2.5755 19 7 5.4911 5.2875 3.3785 20 6 5.3209 5.7918 4.5840 21 6 6.4133 5.8100 5.6219 22 6 6.8546 4.3764 5.9230 23 6 7.6055 6.6103 5.0935 24 6 4.1003 6.2869 4.8104 25 6 3.6246 6.9215 6.0917 26 16 3.1470 6.0706 3.3444 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.9564 0.7805 -0.8891 31 1 3.9557 0.7809 0.8908 32 1 2.6166 1.4951 -3.2593 33 1 5.4854 4.8883 0.7447 34 1 3.7877 5.3896 0.5582 35 1 6.0397 6.2745 6.5345 36 1 7.6451 4.3895 6.6734 37 1 6.0052 3.8062 6.2995 38 1 7.2281 3.9118 5.0105 39 1 7.2912 7.6316 4.8789 40 1 8.3959 6.6230 5.8440 41 1 7.9790 6.1457 4.1809 42 1 3.8194 7.9935 6.0604 43 1 2.5543 6.7501 6.2067 44 1 4.1559 6.4801 6.9349 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000440711345.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:13 Heat of formation + Delta-G solvation = -78.950887 kcal Electronic energy + Delta-G solvation = -27957.509470 eV Core-core repulsion = 24002.210325 eV Total energy + Delta-G solvation = -3955.299144 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.90947 -39.42555 -38.27392 -35.55051 -34.92205 -34.58731 -32.39604 -31.65149 -30.45939 -28.32634 -27.03701 -26.38763 -25.62228 -24.63837 -23.30628 -21.53794 -20.24972 -19.25901 -18.46465 -17.42896 -16.87508 -16.59563 -16.36307 -15.48176 -15.39188 -15.22097 -14.66650 -14.39526 -14.25112 -13.99721 -13.97833 -13.32911 -13.01981 -12.97425 -12.89244 -12.64457 -12.49395 -12.28673 -12.23636 -11.96916 -11.81354 -11.61652 -11.35670 -11.33340 -11.15291 -11.06250 -10.81947 -10.74941 -10.58582 -10.49691 -10.48598 -9.82765 -9.61312 -9.17240 -9.04866 -8.85791 -8.66734 -8.17974 -8.02085 -6.56532 -4.05631 1.08652 1.73948 2.16619 3.05682 3.14142 3.16478 3.18305 3.45666 3.67494 3.96127 4.04371 4.34928 4.68375 4.91243 4.93900 5.02162 5.21455 5.26034 5.29452 5.47125 5.53700 5.69141 5.71755 5.74150 5.77388 5.82073 5.91772 5.94277 5.97765 5.98284 6.04858 6.14670 6.17484 6.22963 6.34429 6.41376 6.44069 6.59196 6.65868 7.27266 7.42680 7.54062 8.15913 8.19991 8.91253 9.08373 9.28260 9.69332 10.50696 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012704 B = 0.003604 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.468375 B = 7767.842914 C = 8796.280188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.376 6.376 3 C 0.485 3.515 4 O -0.499 6.499 5 C 0.158 3.842 6 N -0.426 5.426 7 C -0.342 4.342 8 H 0.105 0.895 9 C 0.040 3.960 10 N -0.866 5.866 11 Si 0.925 3.075 12 H -0.271 1.271 13 H -0.284 1.284 14 H -0.272 1.272 15 C 0.478 3.522 16 O -0.592 6.592 17 C -0.050 4.050 18 C 0.098 3.902 19 N -0.464 5.464 20 C 0.075 3.925 21 C -0.017 4.017 22 C -0.140 4.140 23 C -0.139 4.139 24 C -0.247 4.247 25 C -0.068 4.068 26 S 0.120 5.880 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.085 0.915 30 H 0.123 0.877 31 H 0.082 0.918 32 H 0.274 0.726 33 H 0.113 0.887 34 H 0.108 0.892 35 H 0.080 0.920 36 H 0.054 0.946 37 H 0.052 0.948 38 H 0.065 0.935 39 H 0.050 0.950 40 H 0.055 0.945 41 H 0.065 0.935 42 H 0.070 0.930 43 H 0.066 0.934 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.769 5.310 9.597 11.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.293 6.293 3 C 0.326 3.674 4 O -0.384 6.384 5 C 0.032 3.968 6 N -0.145 5.145 7 C -0.469 4.469 8 H 0.123 0.877 9 C -0.165 4.165 10 N -0.503 5.503 11 Si 0.751 3.249 12 H -0.196 1.196 13 H -0.209 1.209 14 H -0.197 1.197 15 C 0.266 3.734 16 O -0.477 6.477 17 C -0.093 4.093 18 C -0.181 4.181 19 N -0.177 5.177 20 C -0.058 4.058 21 C -0.039 4.039 22 C -0.198 4.198 23 C -0.196 4.196 24 C -0.368 4.368 25 C -0.127 4.127 26 S 0.377 5.623 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.104 0.896 30 H 0.141 0.859 31 H 0.100 0.900 32 H 0.085 0.915 33 H 0.131 0.869 34 H 0.126 0.874 35 H 0.098 0.902 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.730 5.233 9.409 10.905 hybrid contribution 0.493 0.169 -0.645 0.829 sum 2.224 5.402 8.765 10.533 Atomic orbital electron populations 1.22934 0.78696 1.01807 1.01639 1.86455 1.21694 1.35486 1.85697 1.23935 0.92259 0.80580 0.70601 1.90509 1.66484 1.36363 1.45035 1.20465 0.87259 0.85406 1.03630 1.43333 1.57211 1.08033 1.05936 1.19605 1.35167 1.09845 0.82238 0.87729 1.25217 0.94684 0.96958 0.99663 1.69843 1.22160 1.30134 1.28180 0.86018 0.79639 0.78880 0.80321 1.19624 1.20885 1.19726 1.19686 0.82433 0.87303 0.84020 1.90581 1.55135 1.70007 1.31939 1.20091 1.05198 0.95828 0.88154 1.26323 0.91333 1.00046 1.00394 1.65974 1.30821 1.18269 1.02645 1.19963 0.94047 0.99027 0.92747 1.19715 0.92433 0.97389 0.94319 1.21766 1.00801 0.95252 1.02002 1.21757 0.96735 0.99501 1.01657 1.25577 0.97447 1.12406 1.01375 1.20150 1.01252 0.99662 0.91661 1.83897 1.18433 1.54516 1.05441 0.93160 0.92599 0.89612 0.85889 0.89973 0.91535 0.86923 0.87411 0.90187 0.92650 0.92865 0.91555 0.93053 0.92583 0.91637 0.91166 0.91459 0.90674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 10.56 101.05 1.07 1.83 16 2 O -0.38 -8.16 10.57 -39.25 -0.41 -8.57 16 3 C 0.49 12.02 6.12 36.00 0.22 12.24 16 4 O -0.50 -13.79 15.76 -18.75 -0.30 -14.09 16 5 C 0.16 3.78 5.14 -5.20 -0.03 3.75 16 6 N -0.43 -10.52 2.18 -116.10 -0.25 -10.77 16 7 C -0.34 -8.26 9.15 -14.93 -0.14 -8.39 16 8 H 0.11 2.33 6.56 -52.49 -0.34 1.98 16 9 C 0.04 0.97 4.88 -17.47 -0.09 0.88 16 10 N -0.87 -21.88 9.26 55.50 0.51 -21.37 16 11 Si 0.93 18.65 29.60 -169.99 -5.03 13.62 16 12 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 13 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 14 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 15 C 0.48 11.57 7.41 -10.99 -0.08 11.49 16 16 O -0.59 -15.72 15.71 5.55 0.09 -15.63 16 17 C -0.05 -1.00 4.72 -29.03 -0.14 -1.14 16 18 C 0.10 1.90 5.88 -13.45 -0.08 1.82 16 19 N -0.46 -8.81 10.43 -8.05 -0.08 -8.89 16 20 C 0.08 1.22 5.31 -84.23 -0.45 0.77 16 21 C -0.02 -0.22 3.18 -91.78 -0.29 -0.51 16 22 C -0.14 -1.81 9.14 37.15 0.34 -1.47 16 23 C -0.14 -1.60 9.14 37.16 0.34 -1.26 16 24 C -0.25 -3.76 6.59 -35.92 -0.24 -3.99 16 25 C -0.07 -0.74 9.91 36.00 0.36 -0.38 16 26 S 0.12 2.05 23.18 -107.50 -2.49 -0.44 16 27 H 0.05 0.87 8.13 -51.93 -0.42 0.44 16 28 H 0.06 1.01 8.13 -51.93 -0.42 0.59 16 29 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.12 2.90 6.38 -51.93 -0.33 2.56 16 31 H 0.08 1.86 7.61 -51.93 -0.40 1.46 16 32 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 33 H 0.11 2.10 7.70 -51.93 -0.40 1.70 16 34 H 0.11 2.07 8.09 -51.93 -0.42 1.65 16 35 H 0.08 0.85 6.30 -51.93 -0.33 0.52 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.05 0.72 8.14 -51.92 -0.42 0.30 16 38 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.07 0.71 6.82 -51.93 -0.35 0.36 16 LS Contribution 382.45 15.07 5.76 5.76 Total: -1.00 -31.89 382.45 -7.76 -39.65 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -6.36 Total: 5.09 kcal Atomic # 6 Polarization: 14.84 SS G_CDS: 0.80 Total: 15.64 kcal Atomic # 7 Polarization: -41.21 SS G_CDS: 0.18 Total: -41.03 kcal Atomic # 8 Polarization: -37.66 SS G_CDS: -0.62 Total: -38.29 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.62 kcal Atomic # 16 Polarization: 2.05 SS G_CDS: -2.49 Total: -0.44 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.89 -7.76 -39.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000440711345.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.303 kcal (2) G-P(sol) polarization free energy of solvation -31.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds