Wall clock time and date at job start Sat Apr 11 2020 05:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34228 * 116.99950 * 2 1 4 4 O 1.20829 * 120.00024 * 0.02562 * 3 2 1 5 5 C 1.50695 * 119.99688 * 179.97438 * 3 2 1 6 6 N 1.46501 * 109.47120 * 180.02562 * 5 3 2 7 7 C 1.37105 * 119.99840 * 264.27049 * 6 5 3 8 8 H 1.08000 * 120.00085 * 196.54391 * 7 6 5 9 9 C 1.38949 * 119.99818 * 16.53314 * 7 6 5 10 10 N 1.31412 * 120.00052 * 21.52403 * 9 7 6 11 11 Si 1.86797 * 120.00144 * 201.52459 * 9 7 6 12 12 H 1.48507 * 109.46970 * 59.99888 * 11 9 7 13 13 H 1.48496 * 109.47356 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.46961 * 300.00534 * 11 9 7 15 15 C 1.34771 * 120.00454 * 83.98919 * 6 5 3 16 16 O 1.21292 * 119.99776 * 0.02562 * 15 6 5 17 17 C 1.50697 * 120.00116 * 180.02562 * 15 6 5 18 18 C 1.50703 * 109.47261 * 180.02562 * 17 15 6 19 19 N 1.29027 * 124.91767 * 89.99616 * 18 17 15 20 20 C 1.31781 * 117.12605 * 179.97438 * 19 18 17 21 21 C 1.50696 * 122.75177 * 180.02562 * 20 19 18 22 22 C 1.52992 * 109.47163 * 299.97327 * 21 20 19 23 23 C 1.53001 * 109.46975 * 59.97623 * 21 20 19 24 24 C 1.33646 * 114.50110 * 359.97438 * 20 19 18 25 25 C 1.50692 * 126.03910 * 179.97438 * 24 20 19 26 26 S 1.70980 * 124.91433 * 269.69611 * 18 17 15 27 27 H 1.09004 * 109.47421 * 300.00271 * 1 2 3 28 28 H 1.09003 * 109.47075 * 60.00089 * 1 2 3 29 29 H 1.09005 * 109.47483 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47516 * 60.00050 * 5 3 2 31 31 H 1.09003 * 109.47477 * 299.99816 * 5 3 2 32 32 H 0.97005 * 120.00029 * 179.97438 * 10 9 7 33 33 H 1.09000 * 109.47478 * 299.99758 * 17 15 6 34 34 H 1.08997 * 109.47342 * 60.00344 * 17 15 6 35 35 H 1.09005 * 109.47002 * 179.97438 * 21 20 19 36 36 H 1.09005 * 109.47410 * 179.97438 * 22 21 20 37 37 H 1.09010 * 109.47334 * 300.00022 * 22 21 20 38 38 H 1.09001 * 109.47534 * 59.99877 * 22 21 20 39 39 H 1.08998 * 109.47450 * 60.00000 * 23 21 20 40 40 H 1.09005 * 109.47010 * 180.02562 * 23 21 20 41 41 H 1.09001 * 109.46648 * 299.99465 * 23 21 20 42 42 H 1.09003 * 109.47437 * 90.00356 * 25 24 20 43 43 H 1.09006 * 109.47500 * 209.99805 * 25 24 20 44 44 H 1.09000 * 109.47256 * 330.00054 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9817 2.6797 0.0011 7 6 4.2902 3.3037 -1.1801 8 1 4.8430 4.2315 -1.1724 9 6 3.8919 2.7423 -2.3871 10 7 2.8949 1.8867 -2.4166 11 14 4.7738 3.2036 -3.9679 12 1 6.2091 2.8385 -3.8587 13 1 4.1621 2.4735 -5.1072 14 1 4.6509 4.6661 -4.1945 15 6 4.0552 3.3603 1.1620 16 8 3.7778 2.8096 2.2064 17 6 4.4820 4.8056 1.1623 18 6 4.4820 5.3291 2.5755 19 7 5.4911 5.2875 3.3785 20 6 5.3209 5.7918 4.5840 21 6 6.4133 5.8100 5.6219 22 6 6.8546 4.3764 5.9230 23 6 7.6055 6.6103 5.0935 24 6 4.1003 6.2869 4.8104 25 6 3.6246 6.9215 6.0917 26 16 3.1470 6.0706 3.3444 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.9564 0.7805 -0.8891 31 1 3.9557 0.7809 0.8908 32 1 2.6166 1.4951 -3.2593 33 1 5.4854 4.8883 0.7447 34 1 3.7877 5.3896 0.5582 35 1 6.0397 6.2745 6.5345 36 1 7.6451 4.3895 6.6734 37 1 6.0052 3.8062 6.2995 38 1 7.2281 3.9118 5.0105 39 1 7.2912 7.6316 4.8789 40 1 8.3959 6.6230 5.8440 41 1 7.9790 6.1457 4.1809 42 1 3.8194 7.9935 6.0604 43 1 2.5543 6.7501 6.2067 44 1 4.1559 6.4801 6.9349 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000440711345.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:12 Heat of formation + Delta-G solvation = -97.228642 kcal Electronic energy + Delta-G solvation = -27958.302052 eV Core-core repulsion = 24002.210325 eV Total energy + Delta-G solvation = -3956.091727 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.45636 -41.06099 -40.08113 -37.35766 -36.57462 -36.05357 -33.60360 -33.48221 -31.95047 -30.01043 -27.99150 -27.92780 -27.05503 -26.30149 -24.58070 -22.87145 -21.94782 -21.08934 -19.75704 -19.06106 -18.48308 -18.33121 -18.12771 -17.29686 -16.99643 -16.61200 -16.21684 -16.08419 -15.70520 -15.59759 -15.02031 -14.69405 -14.59306 -14.30277 -14.18322 -13.96914 -13.85471 -13.64797 -13.57227 -13.33179 -13.10975 -12.92679 -12.90181 -12.85362 -12.78565 -12.52655 -12.40875 -12.13403 -12.04524 -11.75827 -11.59371 -11.58817 -11.53280 -10.95186 -10.65455 -10.50777 -10.08956 -9.92640 -9.46484 -8.40666 -5.96262 -0.23657 0.44974 0.85297 1.41453 1.51398 1.60673 1.65826 1.75937 1.85800 2.21014 2.32884 2.80840 3.09309 3.19416 3.81949 3.95588 4.08081 4.17655 4.24687 4.27843 4.29711 4.33521 4.39347 4.39880 4.48745 4.54808 4.61220 4.67224 4.71991 4.74345 4.81867 4.82937 4.95746 4.99579 5.06460 5.16011 5.36991 5.38228 5.42150 5.52027 5.59034 5.68266 6.29031 6.88197 7.03734 7.18222 7.41256 7.82279 8.66563 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012704 B = 0.003604 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.468375 B = 7767.842914 C = 8796.280188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.377 6.377 3 C 0.487 3.513 4 O -0.536 6.536 5 C 0.155 3.845 6 N -0.435 5.435 7 C -0.360 4.360 8 H 0.119 0.881 9 C 0.001 3.999 10 N -0.893 5.893 11 Si 0.995 3.005 12 H -0.263 1.263 13 H -0.287 1.287 14 H -0.267 1.267 15 C 0.467 3.533 16 O -0.623 6.623 17 C -0.039 4.039 18 C 0.062 3.938 19 N -0.478 5.478 20 C 0.049 3.951 21 C -0.017 4.017 22 C -0.137 4.137 23 C -0.134 4.134 24 C -0.228 4.228 25 C -0.070 4.070 26 S 0.108 5.892 27 H 0.049 0.951 28 H 0.046 0.954 29 H 0.134 0.866 30 H 0.123 0.877 31 H 0.087 0.913 32 H 0.273 0.727 33 H 0.122 0.878 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.086 0.914 37 H 0.041 0.959 38 H 0.036 0.964 39 H 0.054 0.946 40 H 0.082 0.918 41 H 0.040 0.960 42 H 0.094 0.906 43 H 0.074 0.926 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.429 6.396 10.774 12.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.294 6.294 3 C 0.330 3.670 4 O -0.423 6.423 5 C 0.029 3.971 6 N -0.153 5.153 7 C -0.486 4.486 8 H 0.136 0.864 9 C -0.201 4.201 10 N -0.531 5.531 11 Si 0.819 3.181 12 H -0.187 1.187 13 H -0.212 1.212 14 H -0.192 1.192 15 C 0.256 3.744 16 O -0.511 6.511 17 C -0.082 4.082 18 C -0.216 4.216 19 N -0.192 5.192 20 C -0.083 4.083 21 C -0.037 4.037 22 C -0.195 4.195 23 C -0.191 4.191 24 C -0.349 4.349 25 C -0.129 4.129 26 S 0.365 5.635 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.152 0.848 30 H 0.141 0.859 31 H 0.105 0.895 32 H 0.083 0.917 33 H 0.140 0.860 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.104 0.896 37 H 0.060 0.940 38 H 0.055 0.945 39 H 0.073 0.927 40 H 0.101 0.899 41 H 0.059 0.941 42 H 0.113 0.887 43 H 0.093 0.907 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.403 6.302 10.584 12.550 hybrid contribution 0.203 -0.226 -0.913 0.962 sum 2.605 6.076 9.671 11.715 Atomic orbital electron populations 1.23299 0.76134 1.04888 1.01210 1.86422 1.24172 1.33782 1.85033 1.24026 0.92546 0.80818 0.69603 1.90477 1.67291 1.37638 1.46929 1.20518 0.87238 0.85668 1.03696 1.43574 1.56993 1.08314 1.06427 1.20048 1.35576 1.10663 0.82339 0.86356 1.26092 0.94827 0.96738 1.02484 1.69949 1.23234 1.31157 1.28760 0.84953 0.78562 0.78591 0.76036 1.18741 1.21220 1.19163 1.20354 0.81941 0.88726 0.83423 1.90531 1.56569 1.71063 1.32926 1.19932 1.05538 0.93179 0.89545 1.26151 0.92595 1.02415 1.00479 1.65961 1.31224 1.18166 1.03818 1.20562 0.95669 0.99405 0.92635 1.19906 0.91913 0.97534 0.94387 1.21740 1.01217 0.95148 1.01381 1.21716 0.96960 0.99102 1.01350 1.26189 0.96378 1.10692 1.01684 1.20387 1.01924 1.00895 0.89727 1.83817 1.18418 1.54252 1.07011 0.93187 0.93481 0.84761 0.85895 0.89535 0.91664 0.86012 0.87030 0.87117 0.89566 0.93985 0.94500 0.92670 0.89891 0.94055 0.88714 0.90707 0.88512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.31 10.56 113.37 1.20 2.51 16 2 O -0.38 -16.45 10.57 -51.40 -0.54 -17.00 16 3 C 0.49 24.75 6.12 71.23 0.44 25.19 16 4 O -0.54 -30.47 15.76 21.95 0.35 -30.12 16 5 C 0.15 7.62 5.14 85.63 0.44 8.06 16 6 N -0.43 -22.08 2.18 -639.60 -1.39 -23.47 16 7 C -0.36 -17.61 9.15 84.04 0.77 -16.85 16 8 H 0.12 5.30 6.56 -2.91 -0.02 5.28 16 9 C 0.00 0.06 4.88 84.93 0.41 0.47 16 10 N -0.89 -45.72 9.26 21.66 0.20 -45.52 16 11 Si 1.00 38.05 29.60 68.60 2.03 40.08 16 12 H -0.26 -9.64 7.11 99.48 0.71 -8.94 16 13 H -0.29 -11.02 7.11 99.48 0.71 -10.32 16 14 H -0.27 -9.93 7.11 99.48 0.71 -9.22 16 15 C 0.47 23.38 7.41 87.66 0.65 24.03 16 16 O -0.62 -34.41 15.71 -3.07 -0.05 -34.46 16 17 C -0.04 -1.63 4.72 29.10 0.14 -1.49 16 18 C 0.06 2.46 5.88 88.52 0.52 2.98 16 19 N -0.48 -18.39 10.43 -179.40 -1.87 -20.26 16 20 C 0.05 1.55 5.31 41.52 0.22 1.77 16 21 C -0.02 -0.39 3.18 -11.54 -0.04 -0.42 16 22 C -0.14 -3.36 9.14 71.98 0.66 -2.71 16 23 C -0.13 -2.81 9.14 71.98 0.66 -2.15 16 24 C -0.23 -6.59 6.59 24.64 0.16 -6.43 16 25 C -0.07 -1.29 9.91 71.23 0.71 -0.58 16 26 S 0.11 3.74 23.18 -56.49 -1.31 2.43 16 27 H 0.05 1.71 8.13 -2.38 -0.02 1.69 16 28 H 0.05 1.69 8.13 -2.39 -0.02 1.67 16 29 H 0.13 3.25 8.14 -2.38 -0.02 3.23 16 30 H 0.12 5.97 6.38 -2.39 -0.02 5.95 16 31 H 0.09 4.08 7.61 -2.39 -0.02 4.07 16 32 H 0.27 13.40 8.31 -92.70 -0.77 12.63 16 33 H 0.12 4.68 7.70 -2.39 -0.02 4.67 16 34 H 0.11 4.44 8.09 -2.39 -0.02 4.42 16 35 H 0.11 1.90 6.30 -2.38 -0.02 1.88 16 36 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 37 H 0.04 1.10 8.14 -2.38 -0.02 1.08 16 38 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 41 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.07 1.30 8.14 -2.38 -0.02 1.29 16 44 H 0.10 1.41 6.82 -2.39 -0.02 1.40 16 Total: -1.00 -71.20 382.45 5.36 -65.84 By element: Atomic # 1 Polarization: 27.09 SS G_CDS: 1.02 Total: 28.11 kcal Atomic # 6 Polarization: 27.44 SS G_CDS: 6.93 Total: 34.37 kcal Atomic # 7 Polarization: -86.18 SS G_CDS: -3.07 Total: -89.25 kcal Atomic # 8 Polarization: -81.33 SS G_CDS: -0.25 Total: -81.58 kcal Atomic # 14 Polarization: 38.05 SS G_CDS: 2.03 Total: 40.08 kcal Atomic # 16 Polarization: 3.74 SS G_CDS: -1.31 Total: 2.43 kcal Total: -71.20 5.36 -65.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000440711345.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.389 kcal (2) G-P(sol) polarization free energy of solvation -71.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds