Wall clock time and date at job start Sat Apr 11 2020 05:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35244 * 126.07226 * 2 1 4 4 C 1.40405 * 107.86858 * 179.88422 * 3 2 1 5 5 N 1.40185 * 125.97172 * 180.13791 * 4 3 2 6 6 C 1.34769 * 119.99939 * 0.26560 * 5 4 3 7 7 O 1.21614 * 120.00351 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99830 * 180.02562 * 6 5 4 9 9 C 1.40837 * 119.99968 * 180.02562 * 8 6 5 10 10 C 1.40241 * 126.07585 * 0.02562 * 9 8 6 11 11 N 1.30839 * 108.34077 * 180.02562 * 10 9 8 12 12 N 1.40070 * 108.36652 * 0.02562 * 11 10 9 13 13 C 1.46496 * 126.06134 * 180.02562 * 12 11 10 14 14 F 1.39900 * 109.47431 * 119.97504 * 13 12 11 15 15 F 1.39908 * 109.47161 * 239.97608 * 13 12 11 16 16 C 1.35733 * 126.07542 * 179.71641 * 9 8 6 17 17 N 1.31212 * 108.05095 * 0.38451 * 4 3 2 18 18 N 1.34968 * 126.07013 * 180.31258 * 2 1 3 19 19 C 1.46497 * 125.97347 * 359.94190 * 18 2 1 20 20 C 1.50702 * 109.47265 * 90.00102 * 19 18 2 21 21 H 1.08007 * 120.00079 * 359.97438 * 20 19 18 22 22 C 1.37879 * 120.00366 * 179.97438 * 20 19 18 23 23 N 1.31512 * 119.99912 * 180.02562 * 22 20 19 24 24 Si 1.86794 * 119.99842 * 0.02562 * 22 20 19 25 25 H 1.48495 * 109.47293 * 89.99588 * 24 22 20 26 26 H 1.48499 * 109.47046 * 209.99775 * 24 22 20 27 27 H 1.48504 * 109.47143 * 329.99523 * 24 22 20 28 28 H 1.09002 * 109.47152 * 269.68666 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.68766 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.68747 * 1 2 3 31 31 H 1.08003 * 126.06033 * 359.97438 * 3 2 1 32 32 H 0.97001 * 119.99824 * 180.26969 * 5 4 3 33 33 H 0.97001 * 119.99933 * 0.02562 * 8 6 5 34 34 H 1.07997 * 125.83071 * 359.97438 * 10 9 8 35 35 H 1.09003 * 109.47240 * 359.97331 * 13 12 11 36 36 H 1.07996 * 126.21648 * 359.97438 * 16 9 8 37 37 H 1.08999 * 109.47100 * 209.99715 * 19 18 2 38 38 H 1.09003 * 109.47411 * 330.00206 * 19 18 2 39 39 H 0.97007 * 119.99494 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3034 1.0931 0.0000 4 6 3.6371 0.6545 0.0027 5 7 4.7738 1.4750 0.0063 6 6 4.6370 2.8158 0.0129 7 8 3.5275 3.3138 0.0161 8 7 5.7298 3.6046 0.0158 9 6 5.5868 5.0057 0.0232 10 6 4.3754 5.7122 0.0286 11 7 4.6455 6.9924 0.0342 12 7 6.0373 7.1499 0.0320 13 6 6.7610 8.4236 0.0371 14 9 7.5669 8.4975 1.1783 15 9 7.5627 8.5090 -1.1062 16 6 6.5971 5.9121 0.0323 17 7 3.6337 -0.6576 -0.0041 18 7 2.3017 -1.0909 -0.0060 19 6 1.8500 -2.4845 -0.0124 20 6 1.6940 -2.9555 -1.4353 21 1 1.9093 -2.2838 -2.2532 22 6 1.2764 -4.2440 -1.6933 23 7 1.1408 -4.6551 -2.9351 24 14 0.9033 -5.4056 -0.2788 25 1 -0.5275 -5.2822 0.0988 26 1 1.1862 -6.8020 -0.6973 27 1 1.7548 -5.0561 0.8866 28 1 -0.3633 -0.0056 1.0277 29 1 -0.3633 -0.8872 -0.5187 30 1 -0.3633 0.8928 -0.5090 31 1 1.9720 2.1211 -0.0004 32 1 5.6587 1.0778 0.0040 33 1 6.6147 3.2073 0.0128 34 1 3.3882 5.2743 0.0274 35 1 6.0470 9.2472 0.0426 36 1 7.6539 5.6897 0.0355 37 1 2.5851 -3.1070 0.4978 38 1 0.8918 -2.5583 0.5019 39 1 0.8466 -5.5615 -3.1165 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000446273948.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:19 Heat of formation + Delta-G solvation = 55.953006 kcal Electronic energy + Delta-G solvation = -27935.437718 eV Core-core repulsion = 23360.900467 eV Total energy + Delta-G solvation = -4574.537251 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.120 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.78743 -47.89059 -41.75954 -40.83412 -39.67681 -35.39679 -34.87316 -33.36404 -32.56505 -31.56882 -31.13910 -29.75791 -27.18429 -26.46708 -26.04863 -23.36047 -22.33464 -21.99712 -21.17177 -20.05777 -19.70893 -18.64672 -18.25811 -18.06149 -17.81933 -17.13381 -16.54838 -15.91423 -15.86909 -15.42424 -15.07117 -14.96124 -14.64998 -14.56509 -14.41327 -14.22513 -13.89300 -13.78017 -13.37280 -13.12183 -12.65187 -12.58764 -12.45696 -12.37299 -12.02069 -11.65570 -11.42854 -11.39635 -11.14668 -10.82831 -10.61502 -10.14215 -10.11564 -10.00707 -9.81329 -9.61324 -8.80392 -8.32218 -8.01972 -7.49827 -6.28057 -4.31422 1.16392 1.32242 2.12853 2.22048 2.61195 3.02631 3.04027 3.13003 3.20758 3.21951 3.39307 3.68282 3.70338 4.06807 4.15219 4.19874 4.24817 4.64220 4.99495 5.01656 5.07436 5.30012 5.58668 5.71701 5.83517 6.01375 6.04011 6.15331 6.32990 6.38988 6.43899 6.47343 6.55896 6.73284 6.87588 7.13329 7.26838 7.36046 7.71324 7.82698 8.29023 8.33534 8.52755 8.77508 9.27000 10.84329 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.034972 B = 0.001859 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.449625 B =15055.043601 C =15280.005302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.096 3.904 3 C -0.284 4.284 4 C 0.284 3.716 5 N -0.637 5.637 6 C 0.719 3.281 7 O -0.554 6.554 8 N -0.657 5.657 9 C 0.048 3.952 10 C 0.080 3.920 11 N -0.267 5.267 12 N -0.438 5.438 13 C 0.511 3.489 14 F -0.183 7.183 15 F -0.183 7.183 16 C 0.020 3.980 17 N -0.318 5.318 18 N -0.316 5.316 19 C 0.232 3.768 20 C -0.542 4.542 21 H 0.081 0.919 22 C 0.079 3.921 23 N -0.886 5.886 24 Si 0.873 3.127 25 H -0.271 1.271 26 H -0.280 1.280 27 H -0.263 1.263 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.164 0.836 32 H 0.409 0.591 33 H 0.410 0.590 34 H 0.221 0.779 35 H 0.166 0.834 36 H 0.181 0.819 37 H 0.050 0.950 38 H 0.046 0.954 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.787 23.226 8.160 26.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.035 4.035 3 C -0.315 4.315 4 C 0.030 3.970 5 N -0.286 5.286 6 C 0.419 3.581 7 O -0.428 6.428 8 N -0.305 5.305 9 C -0.057 4.057 10 C -0.110 4.110 11 N -0.086 5.086 12 N -0.233 5.233 13 C 0.375 3.625 14 F -0.165 7.165 15 F -0.164 7.164 16 C -0.123 4.123 17 N -0.148 5.148 18 N -0.099 5.099 19 C 0.113 3.887 20 C -0.580 4.580 21 H 0.099 0.901 22 C -0.126 4.126 23 N -0.523 5.523 24 Si 0.699 3.301 25 H -0.196 1.196 26 H -0.205 1.205 27 H -0.188 1.188 28 H 0.090 0.910 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.181 0.819 32 H 0.244 0.756 33 H 0.245 0.755 34 H 0.237 0.763 35 H 0.182 0.818 36 H 0.198 0.802 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 10.059 23.583 8.038 26.870 hybrid contribution 1.075 -1.478 0.461 1.885 sum 11.134 22.105 8.499 26.170 Atomic orbital electron populations 1.20413 0.87786 1.04247 1.02495 1.21072 0.94961 0.86913 1.00573 1.21249 0.89519 0.99949 1.20790 1.18587 0.86383 0.89206 1.02830 1.41215 1.07991 1.03278 1.76114 1.15396 0.84060 0.80511 0.78126 1.90757 1.23413 1.72855 1.55822 1.41751 1.08729 1.02591 1.77468 1.17446 0.93463 0.82795 1.11966 1.24874 1.00627 0.88444 0.97088 1.77472 0.88381 1.19186 1.23563 1.49367 1.05981 1.04726 1.63250 1.20825 0.83023 0.86681 0.71922 1.93134 1.75999 1.95958 1.51380 1.93139 1.76196 1.95857 1.51228 1.21848 0.99034 0.84225 1.07240 1.77254 0.99545 1.08342 1.29662 1.48509 1.01097 1.07047 1.53198 1.19998 0.95305 0.73723 0.99711 1.21180 1.47428 0.99018 0.90347 0.90080 1.24814 0.94497 0.97473 0.95779 1.69876 1.45568 1.18332 1.18483 0.86904 0.79446 0.81013 0.82787 1.19599 1.20520 1.18801 0.91049 0.89846 0.90281 0.81896 0.75560 0.75465 0.76338 0.81751 0.80179 0.93213 0.93604 0.92112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.46 9.89 36.01 0.36 -1.10 16 2 C 0.10 1.90 6.93 -82.28 -0.57 1.33 16 3 C -0.28 -5.46 9.52 -39.83 -0.38 -5.84 16 4 C 0.28 5.38 8.11 -154.37 -1.25 4.13 16 5 N -0.64 -8.88 5.45 -15.50 -0.08 -8.96 16 6 C 0.72 9.47 8.51 -86.92 -0.74 8.73 16 7 O -0.55 -8.72 10.62 5.26 0.06 -8.66 16 8 N -0.66 -6.08 5.48 -14.39 -0.08 -6.16 16 9 C 0.05 0.49 6.90 -83.86 -0.58 -0.09 16 10 C 0.08 0.93 10.84 -17.22 -0.19 0.74 16 11 N -0.27 -2.94 12.57 30.70 0.39 -2.56 16 12 N -0.44 -3.89 3.90 -66.31 -0.26 -4.15 16 13 C 0.51 3.05 6.39 59.84 0.38 3.43 16 14 F -0.18 -1.24 17.48 2.25 0.04 -1.20 16 15 F -0.18 -1.26 17.49 2.25 0.04 -1.22 16 16 C 0.02 0.17 11.47 -16.67 -0.19 -0.03 16 17 N -0.32 -6.93 12.59 31.44 0.40 -6.53 16 18 N -0.32 -7.10 3.59 -58.33 -0.21 -7.31 16 19 C 0.23 5.44 4.88 -5.19 -0.03 5.41 16 20 C -0.54 -14.88 9.94 -34.44 -0.34 -15.23 16 21 H 0.08 2.53 8.06 -52.48 -0.42 2.11 16 22 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 23 N -0.89 -26.00 13.96 55.43 0.77 -25.22 16 24 Si 0.87 19.81 27.47 -169.99 -4.67 15.14 16 25 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 H -0.26 -5.72 6.54 56.52 0.37 -5.35 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.08 1.44 7.71 -51.93 -0.40 1.04 16 30 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.16 3.00 5.91 -52.48 -0.31 2.69 16 32 H 0.41 4.35 8.84 -40.82 -0.36 3.99 16 33 H 0.41 2.29 8.84 -40.82 -0.36 1.93 16 34 H 0.22 2.72 5.91 -52.49 -0.31 2.41 16 35 H 0.17 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.18 0.90 8.06 -52.49 -0.42 0.47 16 37 H 0.05 1.18 7.20 -51.93 -0.37 0.80 16 38 H 0.05 0.99 7.08 -51.93 -0.37 0.62 16 39 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 350.53 15.07 5.28 5.28 Total: -1.00 -34.80 350.53 -5.72 -40.51 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -3.76 Total: 7.48 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: -3.62 Total: 3.55 kcal Atomic # 7 Polarization: -61.81 SS G_CDS: 0.92 Total: -60.89 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: 0.06 Total: -8.66 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.08 Total: -2.42 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -4.67 Total: 15.14 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.80 -5.72 -40.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000446273948.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.464 kcal (2) G-P(sol) polarization free energy of solvation -34.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds