Wall clock time and date at job start Sat Apr 11 2020 05:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35244 * 126.07226 * 2 1 4 4 C 1.40405 * 107.86858 * 179.88422 * 3 2 1 5 5 N 1.40185 * 125.97172 * 180.13791 * 4 3 2 6 6 C 1.34769 * 119.99939 * 0.26560 * 5 4 3 7 7 O 1.21614 * 120.00351 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99830 * 180.02562 * 6 5 4 9 9 C 1.40837 * 119.99968 * 180.02562 * 8 6 5 10 10 C 1.40241 * 126.07585 * 0.02562 * 9 8 6 11 11 N 1.30839 * 108.34077 * 180.02562 * 10 9 8 12 12 N 1.40070 * 108.36652 * 0.02562 * 11 10 9 13 13 C 1.46496 * 126.06134 * 180.02562 * 12 11 10 14 14 F 1.39900 * 109.47431 * 119.97504 * 13 12 11 15 15 F 1.39908 * 109.47161 * 239.97608 * 13 12 11 16 16 C 1.35733 * 126.07542 * 179.71641 * 9 8 6 17 17 N 1.31212 * 108.05095 * 0.38451 * 4 3 2 18 18 N 1.34968 * 126.07013 * 180.31258 * 2 1 3 19 19 C 1.46497 * 125.97347 * 359.94190 * 18 2 1 20 20 C 1.50702 * 109.47265 * 90.00102 * 19 18 2 21 21 H 1.08007 * 120.00079 * 359.97438 * 20 19 18 22 22 C 1.37879 * 120.00366 * 179.97438 * 20 19 18 23 23 N 1.31512 * 119.99912 * 180.02562 * 22 20 19 24 24 Si 1.86794 * 119.99842 * 0.02562 * 22 20 19 25 25 H 1.48495 * 109.47293 * 89.99588 * 24 22 20 26 26 H 1.48499 * 109.47046 * 209.99775 * 24 22 20 27 27 H 1.48504 * 109.47143 * 329.99523 * 24 22 20 28 28 H 1.09002 * 109.47152 * 269.68666 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.68766 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.68747 * 1 2 3 31 31 H 1.08003 * 126.06033 * 359.97438 * 3 2 1 32 32 H 0.97001 * 119.99824 * 180.26969 * 5 4 3 33 33 H 0.97001 * 119.99933 * 0.02562 * 8 6 5 34 34 H 1.07997 * 125.83071 * 359.97438 * 10 9 8 35 35 H 1.09003 * 109.47240 * 359.97331 * 13 12 11 36 36 H 1.07996 * 126.21648 * 359.97438 * 16 9 8 37 37 H 1.08999 * 109.47100 * 209.99715 * 19 18 2 38 38 H 1.09003 * 109.47411 * 330.00206 * 19 18 2 39 39 H 0.97007 * 119.99494 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3034 1.0931 0.0000 4 6 3.6371 0.6545 0.0027 5 7 4.7738 1.4750 0.0063 6 6 4.6370 2.8158 0.0129 7 8 3.5275 3.3138 0.0161 8 7 5.7298 3.6046 0.0158 9 6 5.5868 5.0057 0.0232 10 6 4.3754 5.7122 0.0286 11 7 4.6455 6.9924 0.0342 12 7 6.0373 7.1499 0.0320 13 6 6.7610 8.4236 0.0371 14 9 7.5669 8.4975 1.1783 15 9 7.5627 8.5090 -1.1062 16 6 6.5971 5.9121 0.0323 17 7 3.6337 -0.6576 -0.0041 18 7 2.3017 -1.0909 -0.0060 19 6 1.8500 -2.4845 -0.0124 20 6 1.6940 -2.9555 -1.4353 21 1 1.9093 -2.2838 -2.2532 22 6 1.2764 -4.2440 -1.6933 23 7 1.1408 -4.6551 -2.9351 24 14 0.9033 -5.4056 -0.2788 25 1 -0.5275 -5.2822 0.0988 26 1 1.1862 -6.8020 -0.6973 27 1 1.7548 -5.0561 0.8866 28 1 -0.3633 -0.0056 1.0277 29 1 -0.3633 -0.8872 -0.5187 30 1 -0.3633 0.8928 -0.5090 31 1 1.9720 2.1211 -0.0004 32 1 5.6587 1.0778 0.0040 33 1 6.6147 3.2073 0.0128 34 1 3.3882 5.2743 0.0274 35 1 6.0470 9.2472 0.0426 36 1 7.6539 5.6897 0.0355 37 1 2.5851 -3.1070 0.4978 38 1 0.8918 -2.5583 0.5019 39 1 0.8466 -5.5615 -3.1165 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000446273948.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:19 Heat of formation + Delta-G solvation = 30.637766 kcal Electronic energy + Delta-G solvation = -27936.535470 eV Core-core repulsion = 23360.900467 eV Total energy + Delta-G solvation = -4575.635002 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.120 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.29594 -48.40060 -42.62259 -42.17686 -40.81449 -36.57601 -35.94551 -35.23049 -33.45893 -32.99158 -32.76208 -30.59272 -28.90886 -27.86339 -26.75731 -24.82183 -23.68040 -22.84676 -22.04782 -21.37240 -21.00836 -19.49197 -19.20910 -18.93990 -18.77584 -18.54974 -17.66548 -17.26160 -16.92457 -16.51647 -16.28465 -16.11799 -15.77288 -15.55900 -15.37599 -15.12583 -14.87513 -14.73807 -14.46387 -14.45155 -14.01320 -13.83675 -13.70012 -13.64650 -13.27522 -13.12997 -12.82381 -12.54962 -12.36406 -12.16078 -12.11251 -11.82496 -11.56491 -11.43434 -11.11566 -10.87579 -10.87146 -9.59823 -9.22354 -8.86923 -8.38616 -6.49547 0.43862 0.66151 0.97639 1.06544 1.36776 1.39128 1.40236 1.49347 1.84274 2.00569 2.28423 2.42513 2.58853 2.93635 3.02937 3.24859 3.62075 3.66203 3.84869 3.93942 4.12395 4.30658 4.33702 4.46719 4.57815 4.74353 4.80979 4.85513 4.87239 5.05993 5.17729 5.25588 5.30987 5.43832 5.66965 5.77827 5.90085 6.03337 6.32501 6.39608 6.54334 6.66715 7.07105 7.14449 7.30752 8.77913 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.034972 B = 0.001859 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.449625 B =15055.043601 C =15280.005302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.089 3.911 3 C -0.294 4.294 4 C 0.294 3.706 5 N -0.628 5.628 6 C 0.717 3.283 7 O -0.581 6.581 8 N -0.634 5.634 9 C 0.023 3.977 10 C 0.062 3.938 11 N -0.283 5.283 12 N -0.439 5.439 13 C 0.510 3.490 14 F -0.185 7.185 15 F -0.186 7.186 16 C 0.042 3.958 17 N -0.356 5.356 18 N -0.343 5.343 19 C 0.242 3.758 20 C -0.549 4.549 21 H 0.024 0.976 22 C 0.020 3.980 23 N -0.938 5.938 24 Si 0.951 3.049 25 H -0.251 1.251 26 H -0.280 1.280 27 H -0.244 1.244 28 H 0.101 0.899 29 H 0.066 0.934 30 H 0.099 0.901 31 H 0.171 0.829 32 H 0.425 0.575 33 H 0.429 0.571 34 H 0.205 0.795 35 H 0.198 0.802 36 H 0.217 0.783 37 H 0.050 0.950 38 H 0.072 0.928 39 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.673 24.298 10.181 28.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.041 4.041 3 C -0.325 4.325 4 C 0.039 3.961 5 N -0.280 5.280 6 C 0.417 3.583 7 O -0.457 6.457 8 N -0.284 5.284 9 C -0.081 4.081 10 C -0.128 4.128 11 N -0.103 5.103 12 N -0.234 5.234 13 C 0.376 3.624 14 F -0.167 7.167 15 F -0.168 7.168 16 C -0.103 4.103 17 N -0.186 5.186 18 N -0.126 5.126 19 C 0.122 3.878 20 C -0.587 4.587 21 H 0.042 0.958 22 C -0.179 4.179 23 N -0.576 5.576 24 Si 0.772 3.228 25 H -0.175 1.175 26 H -0.205 1.205 27 H -0.167 1.167 28 H 0.119 0.881 29 H 0.085 0.915 30 H 0.117 0.883 31 H 0.189 0.811 32 H 0.263 0.737 33 H 0.268 0.732 34 H 0.221 0.779 35 H 0.214 0.786 36 H 0.234 0.766 37 H 0.068 0.932 38 H 0.090 0.910 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 11.008 24.724 10.066 28.875 hybrid contribution 0.929 -1.561 -0.259 1.835 sum 11.937 23.163 9.806 27.842 Atomic orbital electron populations 1.20545 0.85296 1.04407 1.04444 1.21763 0.96697 0.86385 0.99217 1.21458 0.89807 1.00129 1.21079 1.18867 0.87905 0.88862 1.00493 1.41159 1.07460 1.03304 1.76072 1.15507 0.84617 0.80226 0.77940 1.90744 1.24899 1.73187 1.56886 1.41411 1.08584 1.02138 1.76262 1.17554 0.93545 0.82979 1.14042 1.24730 1.00817 0.89127 0.98113 1.77413 0.89734 1.18866 1.24241 1.49725 1.05554 1.05973 1.62154 1.21321 0.83296 0.86310 0.71454 1.93131 1.76149 1.95848 1.51573 1.93135 1.76376 1.95751 1.51505 1.22428 1.00203 0.83507 1.04126 1.77162 0.99792 1.09771 1.31866 1.48404 1.01782 1.07035 1.55370 1.19760 0.96418 0.74711 0.96925 1.21262 1.47592 0.98655 0.91216 0.95785 1.25842 0.93819 0.99316 0.98972 1.70041 1.46978 1.19171 1.21412 0.85678 0.80480 0.77636 0.79037 1.17491 1.20501 1.16713 0.88057 0.91473 0.88268 0.81147 0.73739 0.73153 0.77886 0.78569 0.76635 0.93247 0.91010 0.91792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.75 9.89 71.24 0.70 -2.05 16 2 C 0.09 3.54 6.93 41.39 0.29 3.83 16 3 C -0.29 -11.32 9.52 22.11 0.21 -11.11 16 4 C 0.29 11.19 8.11 133.32 1.08 12.27 16 5 N -0.63 -17.14 5.45 -321.22 -1.75 -18.90 16 6 C 0.72 18.35 8.51 179.06 1.52 19.88 16 7 O -0.58 -18.29 10.62 -4.08 -0.04 -18.34 16 8 N -0.63 -10.70 5.48 -317.69 -1.74 -12.44 16 9 C 0.02 0.43 6.90 37.60 0.26 0.69 16 10 C 0.06 1.42 10.84 85.33 0.92 2.34 16 11 N -0.28 -5.95 12.57 -56.78 -0.71 -6.67 16 12 N -0.44 -6.83 3.90 -363.70 -1.42 -8.25 16 13 C 0.51 4.76 6.39 127.77 0.82 5.57 16 14 F -0.19 -2.02 17.48 44.97 0.79 -1.24 16 15 F -0.19 -2.10 17.49 44.97 0.79 -1.31 16 16 C 0.04 0.57 11.47 83.49 0.96 1.53 16 17 N -0.36 -15.72 12.59 -54.44 -0.69 -16.41 16 18 N -0.34 -15.58 3.59 -338.44 -1.22 -16.80 16 19 C 0.24 11.34 4.88 85.63 0.42 11.76 16 20 C -0.55 -31.20 9.94 25.60 0.25 -30.95 16 21 H 0.02 1.59 8.06 -2.91 -0.02 1.57 16 22 C 0.02 1.12 5.47 84.66 0.46 1.59 16 23 N -0.94 -56.77 13.96 21.45 0.30 -56.47 16 24 Si 0.95 40.41 27.47 68.60 1.88 42.29 16 25 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 26 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 27 H -0.24 -9.53 6.54 99.48 0.65 -8.88 16 28 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 29 H 0.07 2.30 7.71 -2.39 -0.02 2.29 16 30 H 0.10 2.63 8.14 -2.38 -0.02 2.61 16 31 H 0.17 6.27 5.91 -2.91 -0.02 6.26 16 32 H 0.42 8.60 8.84 -92.71 -0.82 7.79 16 33 H 0.43 3.74 8.84 -92.71 -0.82 2.92 16 34 H 0.20 5.26 5.91 -2.91 -0.02 5.24 16 35 H 0.20 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.22 1.25 8.06 -2.91 -0.02 1.23 16 37 H 0.05 2.30 7.20 -2.39 -0.02 2.28 16 38 H 0.07 2.97 7.08 -2.39 -0.02 2.95 16 39 H 0.27 15.23 8.31 -92.70 -0.77 14.46 16 Total: -1.00 -79.22 350.53 3.55 -75.67 By element: Atomic # 1 Polarization: 24.03 SS G_CDS: -0.54 Total: 23.50 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: 7.90 Total: 15.35 kcal Atomic # 7 Polarization: -128.70 SS G_CDS: -7.23 Total: -135.93 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -0.04 Total: -18.34 kcal Atomic # 9 Polarization: -4.12 SS G_CDS: 1.57 Total: -2.55 kcal Atomic # 14 Polarization: 40.41 SS G_CDS: 1.88 Total: 42.29 kcal Total: -79.22 3.55 -75.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000446273948.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.310 kcal (2) G-P(sol) polarization free energy of solvation -79.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds