Wall clock time and date at job start Sat Apr 11 2020 05:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30897 * 119.96456 * 2 1 4 4 C 1.34155 * 121.16669 * 180.26970 * 3 2 1 5 5 C 1.38706 * 132.24902 * 179.73680 * 4 3 2 6 6 C 1.38849 * 107.67644 * 180.02562 * 5 4 3 7 7 N 1.31291 * 108.99030 * 359.97438 * 6 5 4 8 8 N 1.37268 * 120.90379 * 359.74836 * 4 3 2 9 9 C 1.36076 * 119.97043 * 359.97438 * 8 4 3 10 10 C 1.38069 * 118.89329 * 359.97438 * 9 8 4 11 11 C 1.47596 * 120.50213 * 179.97438 * 10 9 8 12 12 O 1.21580 * 119.99985 * 234.65859 * 11 10 9 13 13 N 1.34776 * 120.00160 * 54.65818 * 11 10 9 14 14 C 1.46494 * 120.00254 * 185.79777 * 13 11 10 15 15 C 1.50702 * 109.47104 * 270.00493 * 14 13 11 16 16 H 1.07996 * 120.00499 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00044 * 180.02562 * 15 14 13 18 18 N 1.31519 * 120.00042 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00274 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47127 * 59.99584 * 19 17 15 21 21 H 1.48503 * 109.47333 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.46935 * 299.99588 * 19 17 15 23 23 C 1.46503 * 119.99969 * 5.80322 * 13 11 10 24 24 C 1.50700 * 109.47324 * 84.53171 * 23 13 11 25 25 C 1.34519 * 125.78998 * 90.00171 * 24 23 13 26 26 C 1.41381 * 106.83972 * 179.79184 * 25 24 23 27 27 C 1.34508 * 106.84331 * 0.37398 * 26 25 24 28 28 O 1.34307 * 108.42238 * 359.62477 * 27 26 25 29 29 H 1.09001 * 109.46943 * 264.58904 * 1 2 3 30 30 H 1.08993 * 109.47332 * 24.59108 * 1 2 3 31 31 H 1.09002 * 109.46829 * 144.59345 * 1 2 3 32 32 H 1.08004 * 126.16379 * 0.03343 * 5 4 3 33 33 H 1.08001 * 125.50115 * 180.02562 * 6 5 4 34 34 H 1.07996 * 120.55033 * 180.02562 * 9 8 4 35 35 H 1.08997 * 109.47197 * 29.99895 * 14 13 11 36 36 H 1.08998 * 109.47470 * 150.00274 * 14 13 11 37 37 H 0.96997 * 119.99960 * 180.02562 * 18 17 15 38 38 H 1.08998 * 109.46991 * 324.53687 * 23 13 11 39 39 H 1.08997 * 109.47117 * 204.53641 * 23 13 11 40 40 H 1.07997 * 126.57594 * 0.02562 * 25 24 23 41 41 H 1.08001 * 126.57731 * 180.23471 * 26 25 24 42 42 H 1.08002 * 125.79238 * 179.88872 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1608 1.1340 0.0000 4 6 3.5020 1.1622 -0.0054 5 6 4.4129 2.2082 -0.0114 6 6 5.6874 1.6575 -0.0158 7 7 5.5872 0.3484 -0.0123 8 7 4.2316 -0.0006 -0.0059 9 6 3.5944 -1.2029 -0.0004 10 6 2.2139 -1.2263 0.0062 11 6 1.4864 -2.5105 0.0117 12 8 0.6528 -2.7406 -0.8428 13 7 1.7462 -3.4281 0.9641 14 6 1.1192 -4.7504 0.8978 15 6 -0.1929 -4.7219 1.6385 16 1 -0.5262 -3.8101 2.1118 17 6 -0.9674 -5.8601 1.7130 18 7 -0.5614 -6.9706 1.1371 19 14 -2.5942 -5.8246 2.6305 20 1 -3.4923 -4.8197 2.0072 21 1 -3.2298 -7.1651 2.5634 22 1 -2.3539 -5.4608 4.0501 23 6 2.6556 -3.1031 2.0658 24 6 1.8938 -2.3883 3.1519 25 6 1.2683 -2.9729 4.1895 26 6 0.6923 -1.9353 4.9578 27 6 0.9931 -0.7793 4.3395 28 8 1.7237 -1.0595 3.2479 29 1 -0.3633 -0.0969 1.0231 30 1 -0.3633 0.9344 -0.4276 31 1 -0.3633 -0.8376 -0.5954 32 1 4.1738 3.2615 -0.0123 33 1 6.6119 2.2158 -0.0205 34 1 4.1591 -2.1235 -0.0004 35 1 0.9423 -5.0168 -0.1443 36 1 1.7784 -5.4885 1.3546 37 1 -1.1065 -7.7713 1.1892 38 1 3.4552 -2.4595 1.6990 39 1 3.0837 -4.0219 2.4665 40 1 1.2192 -4.0315 4.3977 41 1 0.1187 -2.0492 5.8658 42 1 0.7007 0.2072 4.6675 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000448838398.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:21 Heat of formation + Delta-G solvation = 115.893256 kcal Electronic energy + Delta-G solvation = -30231.633919 eV Core-core repulsion = 26181.632651 eV Total energy + Delta-G solvation = -4050.001268 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.42085 -42.18023 -39.67232 -37.74886 -35.56588 -34.25222 -32.84078 -32.61987 -31.98437 -30.19205 -29.83363 -28.07851 -27.40890 -25.74016 -24.52694 -23.20006 -22.36712 -21.47671 -21.39398 -20.50896 -19.36260 -18.66525 -17.58529 -16.94633 -16.57415 -16.30040 -15.98387 -15.57189 -15.51990 -15.33318 -14.68556 -14.39176 -14.22491 -13.90502 -13.68826 -13.38964 -13.16550 -12.87148 -12.66994 -12.52237 -12.37076 -12.27400 -12.11683 -11.78093 -11.64169 -11.42931 -11.35371 -11.12123 -11.02942 -10.69878 -10.30583 -10.06827 -9.82947 -9.51970 -9.42694 -9.29414 -8.51570 -8.29299 -8.01207 -7.91732 -6.12637 -4.16085 0.38918 0.68861 1.88198 1.97465 2.45264 2.85046 3.01896 3.27495 3.27976 3.32562 3.34829 3.42416 3.63016 3.76871 4.03344 4.15118 4.38468 4.63985 4.89249 4.93698 5.05104 5.12748 5.16027 5.23481 5.34997 5.36817 5.49307 5.61325 5.64296 5.68765 5.76681 5.87475 6.12414 6.16852 6.32629 6.34382 6.38258 6.40149 6.75105 6.85461 7.16398 7.27435 7.30181 7.45928 7.60933 7.83541 7.98824 8.10489 8.56404 8.88625 9.48953 10.95880 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014781 B = 0.004170 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.848952 B = 6713.542911 C = 7270.643917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.261 3.739 3 N -0.474 5.474 4 C 0.273 3.727 5 C -0.277 4.277 6 C 0.094 3.906 7 N -0.318 5.318 8 N -0.313 5.313 9 C 0.191 3.809 10 C -0.210 4.210 11 C 0.571 3.429 12 O -0.507 6.507 13 N -0.584 5.584 14 C 0.246 3.754 15 C -0.521 4.521 16 H 0.061 0.939 17 C 0.064 3.936 18 N -0.895 5.895 19 Si 0.894 3.106 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 C 0.190 3.810 24 C -0.034 4.034 25 C -0.166 4.166 26 C -0.213 4.213 27 C -0.050 4.050 28 O -0.179 6.179 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.108 0.892 32 H 0.161 0.839 33 H 0.197 0.803 34 H 0.185 0.815 35 H 0.049 0.951 36 H 0.038 0.962 37 H 0.264 0.736 38 H 0.073 0.927 39 H 0.116 0.884 40 H 0.152 0.848 41 H 0.143 0.857 42 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.299 13.754 3.048 16.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.097 3.903 3 N -0.187 5.187 4 C 0.047 3.953 5 C -0.308 4.308 6 C -0.085 4.085 7 N -0.142 5.142 8 N -0.083 5.083 9 C 0.055 3.945 10 C -0.221 4.221 11 C 0.355 3.645 12 O -0.382 6.382 13 N -0.315 5.315 14 C 0.128 3.872 15 C -0.560 4.560 16 H 0.079 0.921 17 C -0.138 4.138 18 N -0.534 5.534 19 Si 0.722 3.278 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 C 0.065 3.935 24 C -0.085 4.085 25 C -0.186 4.186 26 C -0.232 4.232 27 C -0.118 4.118 28 O -0.075 6.075 29 H 0.109 0.891 30 H 0.104 0.896 31 H 0.126 0.874 32 H 0.178 0.822 33 H 0.214 0.786 34 H 0.202 0.798 35 H 0.067 0.933 36 H 0.056 0.944 37 H 0.074 0.926 38 H 0.091 0.909 39 H 0.134 0.866 40 H 0.170 0.830 41 H 0.161 0.839 42 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 9.411 13.450 2.327 16.580 hybrid contribution -1.099 -0.106 0.950 1.457 sum 8.313 13.344 3.277 16.059 Atomic orbital electron populations 1.21070 0.86439 1.05545 1.04741 1.21821 0.97852 0.85624 0.85023 1.68052 1.03762 1.28076 1.18770 1.20831 0.88224 0.86994 0.99298 1.20919 0.89611 0.98602 1.21666 1.23849 0.98880 0.91044 0.94740 1.77878 0.89163 1.15472 1.31665 1.47026 1.07645 1.06004 1.47658 1.22343 0.91641 0.88548 0.92016 1.20906 0.92018 0.97962 1.11179 1.17364 0.82621 0.81781 0.82762 1.90802 1.32195 1.77049 1.38139 1.48369 1.45484 1.16241 1.21385 1.19499 0.92975 0.75369 0.99368 1.21320 1.04123 0.96798 1.33716 0.92075 1.24875 0.97959 0.95316 0.95627 1.69905 1.38518 1.01117 1.43874 0.86615 0.83871 0.77128 0.80212 1.20187 1.21280 1.20197 1.20001 0.89876 0.98969 0.84624 1.22808 1.05537 0.80335 0.99822 1.21643 1.00592 1.00760 0.95645 1.21822 1.05923 0.92488 1.02983 1.23869 0.99558 1.00118 0.88237 1.83986 1.57526 1.25156 1.40850 0.89087 0.89645 0.87395 0.82182 0.78593 0.79784 0.93332 0.94363 0.92623 0.90860 0.86583 0.82994 0.83913 0.78847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.79 9.70 36.01 0.35 -1.44 16 2 C 0.26 4.17 6.87 -81.73 -0.56 3.61 16 3 N -0.47 -7.51 10.37 -8.17 -0.08 -7.60 16 4 C 0.27 4.16 7.91 -155.32 -1.23 2.93 16 5 C -0.28 -3.43 10.91 -39.18 -0.43 -3.86 16 6 C 0.09 1.03 11.95 -17.56 -0.21 0.82 16 7 N -0.32 -4.39 12.65 30.49 0.39 -4.00 16 8 N -0.31 -4.66 3.88 -11.68 -0.05 -4.71 16 9 C 0.19 2.73 8.92 -15.73 -0.14 2.59 16 10 C -0.21 -3.40 4.98 -104.88 -0.52 -3.92 16 11 C 0.57 10.90 6.53 -12.44 -0.08 10.82 16 12 O -0.51 -11.46 14.86 5.30 0.08 -11.38 16 13 N -0.58 -11.01 2.45 -177.65 -0.44 -11.44 16 14 C 0.25 5.69 5.16 -5.20 -0.03 5.67 16 15 C -0.52 -13.40 9.39 -34.44 -0.32 -13.72 16 16 H 0.06 1.61 7.68 -52.49 -0.40 1.21 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 18 N -0.90 -24.92 13.29 55.43 0.74 -24.18 16 19 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 C 0.19 2.90 5.75 -5.19 -0.03 2.87 16 24 C -0.03 -0.56 6.86 -35.62 -0.24 -0.81 16 25 C -0.17 -2.79 10.68 -39.70 -0.42 -3.22 16 26 C -0.21 -3.17 10.91 -39.71 -0.43 -3.60 16 27 C -0.05 -0.70 12.09 29.41 0.36 -0.34 16 28 O -0.18 -2.90 10.65 5.69 0.06 -2.84 16 29 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 30 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.11 1.80 6.02 -51.93 -0.31 1.49 16 32 H 0.16 1.61 8.06 -52.48 -0.42 1.19 16 33 H 0.20 1.25 8.06 -52.49 -0.42 0.83 16 34 H 0.19 2.14 7.35 -52.49 -0.39 1.76 16 35 H 0.05 1.27 7.51 -51.93 -0.39 0.88 16 36 H 0.04 0.88 7.86 -51.93 -0.41 0.47 16 37 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 38 H 0.07 0.96 4.54 -51.93 -0.24 0.73 16 39 H 0.12 1.57 7.83 -51.93 -0.41 1.16 16 40 H 0.15 2.60 8.06 -52.49 -0.42 2.18 16 41 H 0.14 1.81 8.06 -52.49 -0.42 1.39 16 42 H 0.19 1.98 8.06 -52.49 -0.42 1.56 16 LS Contribution 366.73 15.07 5.53 5.53 Total: -1.00 -32.47 366.73 -7.48 -39.95 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -4.64 Total: 4.75 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: -4.04 Total: 0.01 kcal Atomic # 7 Polarization: -52.49 SS G_CDS: 0.56 Total: -51.93 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: 0.14 Total: -14.22 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.47 -7.48 -39.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448838398.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.841 kcal (2) G-P(sol) polarization free energy of solvation -32.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds