Wall clock time and date at job start Sat Apr 11 2020 05:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38818 * 125.85584 * 2 1 4 4 C 1.46251 * 126.54349 * 359.95564 * 3 2 1 5 5 C 1.37977 * 119.99780 * 136.83758 * 4 3 2 6 6 C 1.43203 * 120.00147 * 170.78557 * 5 4 3 7 7 N 5.98649 * 94.46505 * 5.43337 * 2 1 3 8 8 C 1.46999 * 120.00132 * 350.78934 * 5 4 3 9 9 O 1.21661 * 119.99651 * 353.11616 * 8 5 4 10 10 N 1.34770 * 120.00029 * 173.11571 * 8 5 4 11 11 C 1.47581 * 134.49412 * 180.02562 * 10 8 5 12 12 C 1.53942 * 86.11955 * 155.35939 * 11 10 8 13 13 O 1.42895 * 113.74013 * 269.15393 * 12 11 10 14 14 C 1.50703 * 113.74095 * 137.95152 * 12 11 10 15 15 H 1.08001 * 119.99871 * 0.02562 * 14 12 11 16 16 C 1.37874 * 120.00138 * 180.02562 * 14 12 11 17 17 N 1.31512 * 120.00075 * 180.02562 * 16 14 12 18 18 Si 1.86804 * 119.99819 * 359.97438 * 16 14 12 19 19 H 1.48503 * 109.47088 * 270.00119 * 18 16 14 20 20 H 1.48500 * 109.47033 * 30.00314 * 18 16 14 21 21 H 1.48497 * 109.47008 * 150.00325 * 18 16 14 22 22 C 1.47583 * 134.49428 * 359.97438 * 10 8 5 23 23 C 1.41797 * 106.90757 * 179.70063 * 3 2 1 24 24 C 1.36225 * 106.99986 * 0.25827 * 23 3 2 25 25 C 1.43196 * 125.76272 * 180.02562 * 24 23 3 26 26 N 4.71981 * 151.28610 * 179.62287 * 2 1 3 27 27 N 1.34322 * 125.86095 * 180.14994 * 2 1 3 28 28 C 1.46507 * 125.33124 * 0.05364 * 27 2 1 29 29 H 1.08994 * 109.46994 * 90.02832 * 1 2 3 30 30 H 1.08992 * 109.46896 * 210.02700 * 1 2 3 31 31 H 1.09006 * 109.47047 * 330.03093 * 1 2 3 32 32 H 1.07998 * 120.00321 * 316.83487 * 4 3 2 33 33 H 1.09005 * 113.76796 * 41.05257 * 11 10 8 34 34 H 1.09000 * 113.86950 * 269.67822 * 11 10 8 35 35 H 0.96701 * 113.99704 * 178.07922 * 13 12 11 36 36 H 0.97001 * 119.99692 * 179.97438 * 17 16 14 37 37 H 1.09001 * 113.76795 * 90.33550 * 22 10 8 38 38 H 1.08998 * 113.77179 * 318.94001 * 22 10 8 39 39 H 1.07999 * 126.49367 * 180.28145 * 23 3 2 40 40 H 1.08992 * 109.47504 * 270.31840 * 28 27 2 41 41 H 1.09001 * 109.46888 * 30.32200 * 28 27 2 42 42 H 1.08999 * 109.46979 * 150.31723 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3201 1.1251 0.0000 4 6 1.8779 2.5192 -0.0009 5 6 2.4996 3.4406 0.8165 6 6 2.2060 4.8352 0.6764 7 7 1.9731 5.9415 0.5651 8 6 3.4635 2.9909 1.8312 9 8 3.6204 1.8020 2.0363 10 7 4.1733 3.8955 2.5341 11 6 5.1953 3.8098 3.5953 12 6 5.6645 5.1934 3.1103 13 8 6.6769 5.1371 2.1034 14 6 6.0001 6.1466 4.2283 15 1 5.9009 5.8299 5.2560 16 6 6.4337 7.4230 3.9391 17 7 6.7270 8.2547 4.9147 18 14 6.6060 7.9706 2.1614 19 1 7.9765 7.6631 1.6793 20 1 5.6133 7.2511 1.3235 21 1 6.3651 9.4330 2.0684 22 6 4.2414 5.3696 2.5513 23 6 3.6612 0.6647 0.0071 24 6 3.6150 -0.6968 0.0052 25 6 4.7478 -1.5727 0.0111 26 7 5.6464 -2.2675 0.0149 27 7 2.2939 -1.0886 -0.0028 28 6 1.8216 -2.4754 -0.0076 29 1 -0.3633 -0.0005 -1.0276 30 1 -0.3633 -0.8897 0.5142 31 1 -0.3633 0.8903 0.5134 32 1 1.0648 2.8274 -0.6414 33 1 5.9270 3.0174 3.4376 34 1 4.7843 3.8142 4.6049 35 1 6.9535 6.0036 1.7750 36 1 7.0325 9.1526 4.7112 37 1 3.5480 5.8333 3.2529 38 1 4.2119 5.8224 1.5602 39 1 4.5506 1.2773 0.0132 40 1 1.6982 -2.8208 1.0188 41 1 0.8651 -2.5317 -0.5273 42 1 2.5500 -3.1056 -0.5179 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490905717.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:28 Heat of formation + Delta-G solvation = 112.446766 kcal Electronic energy + Delta-G solvation = -28866.814844 eV Core-core repulsion = 24816.664125 eV Total energy + Delta-G solvation = -4050.150719 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.73886 -39.90365 -37.94406 -36.57308 -36.51573 -34.66586 -34.11546 -32.56423 -32.52345 -31.68176 -29.15292 -27.25265 -27.01279 -25.82277 -25.29126 -23.84198 -21.32613 -20.98888 -19.77178 -19.49028 -18.11739 -17.80487 -17.23527 -16.38247 -16.05656 -15.72546 -15.49349 -15.13699 -14.89766 -14.24508 -14.02736 -13.70516 -13.67135 -13.65776 -13.57864 -13.35294 -13.25427 -13.14316 -13.01532 -12.90742 -12.85647 -12.62695 -12.51829 -12.32715 -12.16778 -12.08430 -12.05330 -12.00281 -11.18756 -10.93300 -10.58775 -10.17132 -10.10207 -9.64911 -9.33709 -9.02357 -8.69929 -8.47300 -8.01121 -7.91288 -6.41165 -4.47134 0.49148 1.32608 2.03936 2.54007 2.75833 2.88496 2.98612 3.01322 3.06058 3.17714 3.34503 3.44668 3.76039 3.81996 3.99643 4.05143 4.32669 4.39610 4.59900 4.70588 4.72306 4.75487 4.96631 4.98892 5.09468 5.12094 5.26985 5.45283 5.50955 5.61926 5.70013 5.90069 6.00453 6.06549 6.08127 6.27832 6.34195 6.45032 6.54917 6.60510 6.69955 6.82840 7.20770 7.38703 7.58195 8.02766 8.22203 8.49240 8.56413 8.62519 9.16831 10.71013 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016519 B = 0.003230 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.560731 B = 8666.634745 C = 9608.896723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.104 3.896 3 C -0.176 4.176 4 C 0.091 3.909 5 C -0.122 4.122 6 C 0.252 3.748 7 N -0.413 5.413 8 C 0.579 3.421 9 O -0.531 6.531 10 N -0.626 5.626 11 C 0.131 3.869 12 C 0.196 3.804 13 O -0.552 6.552 14 C -0.536 4.536 15 H 0.092 0.908 16 C 0.082 3.918 17 N -0.875 5.875 18 Si 0.856 3.144 19 H -0.265 1.265 20 H -0.257 1.257 21 H -0.283 1.283 22 C 0.059 3.941 23 C -0.003 4.003 24 C 0.026 3.974 25 C 0.287 3.713 26 N -0.420 5.420 27 N -0.418 5.418 28 C 0.065 3.935 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.142 0.858 33 H 0.079 0.921 34 H 0.096 0.904 35 H 0.351 0.649 36 H 0.271 0.729 37 H 0.093 0.907 38 H 0.068 0.932 39 H 0.150 0.850 40 H 0.080 0.920 41 H 0.092 0.908 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.451 -16.693 -12.215 25.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.017 4.017 3 C -0.183 4.183 4 C 0.066 3.934 5 C -0.129 4.129 6 C -0.062 4.062 7 N -0.089 5.089 8 C 0.368 3.632 9 O -0.411 6.411 10 N -0.358 5.358 11 C 0.010 3.990 12 C 0.155 3.845 13 O -0.363 6.363 14 C -0.574 4.574 15 H 0.110 0.890 16 C -0.124 4.124 17 N -0.511 5.511 18 Si 0.684 3.316 19 H -0.192 1.192 20 H -0.182 1.182 21 H -0.209 1.209 22 C -0.065 4.065 23 C -0.030 4.030 24 C -0.082 4.082 25 C -0.028 4.028 26 N -0.098 5.098 27 N -0.093 5.093 28 C -0.076 4.076 29 H 0.101 0.899 30 H 0.090 0.910 31 H 0.108 0.892 32 H 0.160 0.840 33 H 0.097 0.903 34 H 0.114 0.886 35 H 0.204 0.796 36 H 0.081 0.919 37 H 0.111 0.889 38 H 0.087 0.913 39 H 0.168 0.832 40 H 0.099 0.901 41 H 0.111 0.889 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -14.479 -17.643 -12.179 25.870 hybrid contribution -0.061 1.070 -0.744 1.304 sum -14.540 -16.573 -12.923 25.556 Atomic orbital electron populations 1.20517 0.86878 1.04361 1.03414 1.20817 0.93258 0.84881 1.02709 1.17983 0.92530 0.90719 1.17053 1.22088 0.92292 0.89701 0.89328 1.18314 1.06146 0.85434 1.03003 1.25520 0.93869 0.92708 0.94100 1.81265 1.08507 1.11120 1.08044 1.17222 0.79477 0.85139 0.81351 1.90841 1.66937 1.14741 1.68586 1.50104 1.39839 1.08160 1.37708 1.23298 0.87213 0.97895 0.90623 1.20526 0.83526 0.93889 0.86556 1.86462 1.58316 1.33012 1.58499 1.21220 1.46511 0.96060 0.93623 0.88970 1.24984 0.93839 0.96458 0.97096 1.69849 1.42668 1.06967 1.31601 0.87374 0.79555 0.79021 0.85635 1.19185 1.18249 1.20901 1.24742 1.01683 0.78766 1.01273 1.21038 0.97105 0.90565 0.94297 1.14997 0.79485 0.90486 1.23225 1.24336 0.92796 0.92748 0.92877 1.81282 1.09363 1.07750 1.11363 1.43280 1.04255 1.06404 1.55408 1.22167 1.01847 0.79509 1.04075 0.89894 0.90962 0.89177 0.84009 0.90265 0.88630 0.79624 0.91875 0.88874 0.91327 0.83197 0.90117 0.88946 0.89734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.37 9.65 36.01 0.35 -0.03 16 2 C 0.10 0.83 6.95 -81.29 -0.57 0.27 16 3 C -0.18 -1.83 4.78 -105.10 -0.50 -2.34 16 4 C 0.09 0.89 9.48 -36.46 -0.35 0.54 16 5 C -0.12 -1.67 5.87 -104.52 -0.61 -2.29 16 6 C 0.25 3.87 12.46 -22.47 -0.28 3.59 16 7 N -0.41 -7.11 17.93 41.84 0.75 -6.36 16 8 C 0.58 9.92 7.52 -12.71 -0.10 9.83 16 9 O -0.53 -9.52 12.75 5.22 0.07 -9.45 16 10 N -0.63 -12.04 3.60 -179.76 -0.65 -12.68 16 11 C 0.13 2.64 8.23 -2.98 -0.02 2.62 16 12 C 0.20 4.48 1.06 -90.87 -0.10 4.38 16 13 O -0.55 -13.01 13.32 -35.23 -0.47 -13.48 16 14 C -0.54 -13.97 9.20 -34.44 -0.32 -14.29 16 15 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 16 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 17 N -0.88 -24.85 13.96 55.43 0.77 -24.08 16 18 Si 0.86 19.61 24.34 -169.99 -4.14 15.47 16 19 H -0.27 -5.87 7.06 56.52 0.40 -5.47 16 20 H -0.26 -5.68 5.28 56.52 0.30 -5.38 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 22 C 0.06 1.22 5.66 -2.99 -0.02 1.20 16 23 C 0.00 -0.03 7.61 -38.95 -0.30 -0.33 16 24 C 0.03 0.30 6.68 -83.98 -0.56 -0.26 16 25 C 0.29 3.71 15.10 -22.48 -0.34 3.37 16 26 N -0.42 -6.16 18.54 41.83 0.78 -5.38 16 27 N -0.42 -3.55 3.12 -116.57 -0.36 -3.91 16 28 C 0.07 0.31 10.45 59.85 0.63 0.93 16 29 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.07 0.20 7.63 -51.93 -0.40 -0.20 16 31 H 0.09 0.34 7.94 -51.93 -0.41 -0.07 16 32 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 33 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 34 H 0.10 1.80 8.09 -51.93 -0.42 1.38 16 35 H 0.35 8.05 3.31 45.56 0.15 8.20 16 36 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 37 H 0.09 1.93 8.09 -51.93 -0.42 1.51 16 38 H 0.07 1.45 5.36 -51.93 -0.28 1.17 16 39 H 0.15 2.07 7.53 -52.49 -0.40 1.67 16 40 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.09 0.18 7.56 -51.93 -0.39 -0.22 16 42 H 0.08 0.40 7.74 -51.93 -0.40 0.00 16 LS Contribution 365.29 15.07 5.50 5.50 Total: -1.00 -33.12 365.29 -5.25 -38.37 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -4.32 Total: 6.71 kcal Atomic # 6 Polarization: 12.47 SS G_CDS: -3.18 Total: 9.29 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: 1.29 Total: -52.42 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -0.40 Total: -22.93 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -4.14 Total: 15.47 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.12 -5.25 -38.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490905717.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.820 kcal (2) G-P(sol) polarization free energy of solvation -33.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds