Wall clock time and date at job start Sat Apr 11 2020 05:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38818 * 125.85584 * 2 1 4 4 C 1.46251 * 126.54349 * 359.95564 * 3 2 1 5 5 C 1.37977 * 119.99780 * 136.83758 * 4 3 2 6 6 C 1.43203 * 120.00147 * 170.78557 * 5 4 3 7 7 N 5.98649 * 94.46505 * 5.43337 * 2 1 3 8 8 C 1.46999 * 120.00132 * 350.78934 * 5 4 3 9 9 O 1.21661 * 119.99651 * 353.11616 * 8 5 4 10 10 N 1.34770 * 120.00029 * 173.11571 * 8 5 4 11 11 C 1.47581 * 134.49412 * 180.02562 * 10 8 5 12 12 C 1.53942 * 86.11955 * 155.35939 * 11 10 8 13 13 O 1.42895 * 113.74013 * 269.15393 * 12 11 10 14 14 C 1.50703 * 113.74095 * 137.95152 * 12 11 10 15 15 H 1.08001 * 119.99871 * 0.02562 * 14 12 11 16 16 C 1.37874 * 120.00138 * 180.02562 * 14 12 11 17 17 N 1.31512 * 120.00075 * 180.02562 * 16 14 12 18 18 Si 1.86804 * 119.99819 * 359.97438 * 16 14 12 19 19 H 1.48503 * 109.47088 * 270.00119 * 18 16 14 20 20 H 1.48500 * 109.47033 * 30.00314 * 18 16 14 21 21 H 1.48497 * 109.47008 * 150.00325 * 18 16 14 22 22 C 1.47583 * 134.49428 * 359.97438 * 10 8 5 23 23 C 1.41797 * 106.90757 * 179.70063 * 3 2 1 24 24 C 1.36225 * 106.99986 * 0.25827 * 23 3 2 25 25 C 1.43196 * 125.76272 * 180.02562 * 24 23 3 26 26 N 4.71981 * 151.28610 * 179.62287 * 2 1 3 27 27 N 1.34322 * 125.86095 * 180.14994 * 2 1 3 28 28 C 1.46507 * 125.33124 * 0.05364 * 27 2 1 29 29 H 1.08994 * 109.46994 * 90.02832 * 1 2 3 30 30 H 1.08992 * 109.46896 * 210.02700 * 1 2 3 31 31 H 1.09006 * 109.47047 * 330.03093 * 1 2 3 32 32 H 1.07998 * 120.00321 * 316.83487 * 4 3 2 33 33 H 1.09005 * 113.76796 * 41.05257 * 11 10 8 34 34 H 1.09000 * 113.86950 * 269.67822 * 11 10 8 35 35 H 0.96701 * 113.99704 * 178.07922 * 13 12 11 36 36 H 0.97001 * 119.99692 * 179.97438 * 17 16 14 37 37 H 1.09001 * 113.76795 * 90.33550 * 22 10 8 38 38 H 1.08998 * 113.77179 * 318.94001 * 22 10 8 39 39 H 1.07999 * 126.49367 * 180.28145 * 23 3 2 40 40 H 1.08992 * 109.47504 * 270.31840 * 28 27 2 41 41 H 1.09001 * 109.46888 * 30.32200 * 28 27 2 42 42 H 1.08999 * 109.46979 * 150.31723 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3201 1.1251 0.0000 4 6 1.8779 2.5192 -0.0009 5 6 2.4996 3.4406 0.8165 6 6 2.2060 4.8352 0.6764 7 7 1.9731 5.9415 0.5651 8 6 3.4635 2.9909 1.8312 9 8 3.6204 1.8020 2.0363 10 7 4.1733 3.8955 2.5341 11 6 5.1953 3.8098 3.5953 12 6 5.6645 5.1934 3.1103 13 8 6.6769 5.1371 2.1034 14 6 6.0001 6.1466 4.2283 15 1 5.9009 5.8299 5.2560 16 6 6.4337 7.4230 3.9391 17 7 6.7270 8.2547 4.9147 18 14 6.6060 7.9706 2.1614 19 1 7.9765 7.6631 1.6793 20 1 5.6133 7.2511 1.3235 21 1 6.3651 9.4330 2.0684 22 6 4.2414 5.3696 2.5513 23 6 3.6612 0.6647 0.0071 24 6 3.6150 -0.6968 0.0052 25 6 4.7478 -1.5727 0.0111 26 7 5.6464 -2.2675 0.0149 27 7 2.2939 -1.0886 -0.0028 28 6 1.8216 -2.4754 -0.0076 29 1 -0.3633 -0.0005 -1.0276 30 1 -0.3633 -0.8897 0.5142 31 1 -0.3633 0.8903 0.5134 32 1 1.0648 2.8274 -0.6414 33 1 5.9270 3.0174 3.4376 34 1 4.7843 3.8142 4.6049 35 1 6.9535 6.0036 1.7750 36 1 7.0325 9.1526 4.7112 37 1 3.5480 5.8333 3.2529 38 1 4.2119 5.8224 1.5602 39 1 4.5506 1.2773 0.0132 40 1 1.6982 -2.8208 1.0188 41 1 0.8651 -2.5317 -0.5273 42 1 2.5500 -3.1056 -0.5179 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490905717.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:27 Heat of formation + Delta-G solvation = 88.769410 kcal Electronic energy + Delta-G solvation = -28867.841571 eV Core-core repulsion = 24816.664125 eV Total energy + Delta-G solvation = -4051.177446 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.51429 -41.40567 -39.39451 -37.73600 -37.59073 -36.29501 -35.10745 -34.58380 -33.29691 -32.40938 -30.65913 -28.23399 -27.70569 -27.25873 -26.96700 -24.87178 -22.61831 -21.93928 -21.09124 -20.52396 -19.59694 -18.95923 -18.80880 -18.20863 -17.03401 -16.67249 -16.58610 -16.43168 -15.92933 -15.54302 -15.45042 -15.07283 -14.91234 -14.73327 -14.56799 -14.55084 -14.46590 -14.23320 -14.13452 -13.94537 -13.83622 -13.63869 -13.63008 -13.55401 -13.30429 -13.01224 -12.93760 -12.75814 -12.64260 -12.58745 -12.47936 -12.01312 -11.44792 -11.16282 -10.97310 -10.70007 -10.45637 -9.65533 -9.23087 -8.77566 -8.47599 -6.57909 -0.41244 0.48313 1.17196 1.21535 1.23178 1.32090 1.58421 1.68273 1.78515 1.93620 2.03651 2.11484 2.47367 2.66229 2.73680 2.87603 3.01588 3.20365 3.58767 3.83901 3.86598 3.89353 4.16224 4.19711 4.34418 4.38419 4.40890 4.54187 4.63891 4.68034 4.69368 4.73673 4.77138 4.89387 4.92760 4.96566 5.10304 5.25277 5.28421 5.34650 5.67399 5.90823 5.99622 6.18811 6.41885 6.48076 6.49547 6.61555 6.79740 7.09417 7.20622 8.67969 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016519 B = 0.003230 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.560731 B = 8666.634745 C = 9608.896723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.145 3.855 3 C -0.215 4.215 4 C 0.158 3.842 5 C -0.172 4.172 6 C 0.275 3.725 7 N -0.459 5.459 8 C 0.581 3.419 9 O -0.543 6.543 10 N -0.634 5.634 11 C 0.134 3.866 12 C 0.183 3.817 13 O -0.557 6.557 14 C -0.542 4.542 15 H 0.062 0.938 16 C 0.032 3.968 17 N -0.921 5.921 18 Si 0.910 3.090 19 H -0.250 1.250 20 H -0.245 1.245 21 H -0.281 1.281 22 C 0.077 3.923 23 C -0.018 4.018 24 C 0.005 3.995 25 C 0.303 3.697 26 N -0.461 5.461 27 N -0.413 5.413 28 C 0.056 3.944 29 H 0.114 0.886 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.194 0.806 33 H 0.078 0.922 34 H 0.102 0.898 35 H 0.353 0.647 36 H 0.274 0.726 37 H 0.088 0.912 38 H 0.067 0.933 39 H 0.126 0.874 40 H 0.088 0.912 41 H 0.131 0.869 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.940 -18.774 -14.898 30.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.021 3.979 3 C -0.221 4.221 4 C 0.134 3.866 5 C -0.179 4.179 6 C -0.038 4.038 7 N -0.136 5.136 8 C 0.373 3.627 9 O -0.423 6.423 10 N -0.367 5.367 11 C 0.012 3.988 12 C 0.142 3.858 13 O -0.368 6.368 14 C -0.580 4.580 15 H 0.080 0.920 16 C -0.170 4.170 17 N -0.558 5.558 18 Si 0.736 3.264 19 H -0.175 1.175 20 H -0.170 1.170 21 H -0.208 1.208 22 C -0.047 4.047 23 C -0.046 4.046 24 C -0.103 4.103 25 C -0.011 4.011 26 N -0.140 5.140 27 N -0.087 5.087 28 C -0.084 4.084 29 H 0.133 0.867 30 H 0.110 0.890 31 H 0.117 0.883 32 H 0.211 0.789 33 H 0.096 0.904 34 H 0.120 0.880 35 H 0.206 0.794 36 H 0.083 0.917 37 H 0.107 0.893 38 H 0.085 0.915 39 H 0.144 0.856 40 H 0.107 0.893 41 H 0.149 0.851 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -17.973 -19.781 -14.880 30.590 hybrid contribution 0.922 1.402 0.078 1.680 sum -17.050 -18.379 -14.801 29.114 Atomic orbital electron populations 1.20830 0.83023 1.05898 1.05849 1.21518 0.95061 0.83553 0.97746 1.18162 0.92083 0.91947 1.19919 1.22656 0.90153 0.88268 0.85505 1.17944 1.08897 0.85462 1.05586 1.25627 0.92636 0.92688 0.92865 1.81281 1.10458 1.12068 1.09825 1.17708 0.79192 0.84614 0.81163 1.90837 1.67451 1.14997 1.69014 1.50031 1.40817 1.07541 1.38328 1.23164 0.87815 0.96257 0.91555 1.20624 0.84358 0.94823 0.85957 1.86458 1.58773 1.33194 1.58392 1.21394 1.46169 0.96889 0.93513 0.91966 1.25721 0.93563 0.96500 1.01176 1.69975 1.44403 1.07555 1.33878 0.86455 0.80534 0.78542 0.80871 1.17535 1.17008 1.20770 1.24318 0.99659 0.80041 1.00671 1.20994 0.97614 0.91047 0.94911 1.14922 0.80586 0.89966 1.24821 1.24587 0.92636 0.92076 0.91807 1.81283 1.10400 1.09162 1.13105 1.43599 1.03012 1.08214 1.53874 1.22529 1.03465 0.77165 1.05213 0.86739 0.88955 0.88251 0.78943 0.90383 0.87978 0.79445 0.91683 0.89347 0.91518 0.85632 0.89325 0.85071 0.90063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.11 9.65 71.24 0.69 0.58 16 2 C 0.15 1.60 6.95 42.32 0.29 1.89 16 3 C -0.21 -3.74 4.78 -20.18 -0.10 -3.83 16 4 C 0.16 2.44 9.48 24.29 0.23 2.67 16 5 C -0.17 -4.35 5.87 -19.80 -0.12 -4.47 16 6 C 0.28 8.01 12.46 88.33 1.10 9.11 16 7 N -0.46 -15.38 17.93 19.00 0.34 -15.04 16 8 C 0.58 19.51 7.52 86.54 0.65 20.16 16 9 O -0.54 -19.10 12.75 -4.23 -0.05 -19.15 16 10 N -0.63 -24.44 3.60 -844.71 -3.04 -27.48 16 11 C 0.13 5.53 8.23 86.48 0.71 6.24 16 12 C 0.18 8.52 1.06 -10.89 -0.01 8.51 16 13 O -0.56 -26.31 13.32 -148.98 -1.98 -28.29 16 14 C -0.54 -29.25 9.20 25.60 0.24 -29.01 16 15 H 0.06 3.63 8.06 -2.91 -0.02 3.61 16 16 C 0.03 1.74 5.47 84.65 0.46 2.21 16 17 N -0.92 -54.04 13.96 21.45 0.30 -53.74 16 18 Si 0.91 40.84 24.34 68.60 1.67 42.51 16 19 H -0.25 -10.53 7.06 99.48 0.70 -9.83 16 20 H -0.25 -10.47 5.28 99.48 0.53 -9.95 16 21 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 22 C 0.08 3.22 5.66 86.47 0.49 3.71 16 23 C -0.02 -0.42 7.61 22.68 0.17 -0.25 16 24 C 0.01 0.12 6.68 38.98 0.26 0.38 16 25 C 0.30 7.77 15.10 88.33 1.33 9.11 16 26 N -0.46 -13.71 18.54 19.00 0.35 -13.36 16 27 N -0.41 -5.51 3.12 -522.73 -1.63 -7.15 16 28 C 0.06 0.30 10.45 127.77 1.33 1.63 16 29 H 0.11 -0.40 8.14 -2.39 -0.02 -0.42 16 30 H 0.09 -0.14 7.63 -2.39 -0.02 -0.16 16 31 H 0.10 0.07 7.94 -2.38 -0.02 0.05 16 32 H 0.19 1.02 8.06 -2.91 -0.02 0.99 16 33 H 0.08 3.18 8.14 -2.38 -0.02 3.16 16 34 H 0.10 3.98 8.09 -2.39 -0.02 3.96 16 35 H 0.35 15.96 3.31 -74.06 -0.25 15.71 16 36 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 37 H 0.09 3.73 8.09 -2.39 -0.02 3.71 16 38 H 0.07 2.81 5.36 -2.39 -0.01 2.80 16 39 H 0.13 3.56 7.53 -2.91 -0.02 3.53 16 40 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 41 H 0.13 -0.29 7.56 -2.39 -0.02 -0.31 16 42 H 0.08 0.54 7.74 -2.39 -0.02 0.52 16 Total: -1.00 -77.26 365.29 4.35 -72.90 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: 0.67 Total: 20.17 kcal Atomic # 6 Polarization: 20.89 SS G_CDS: 7.74 Total: 28.63 kcal Atomic # 7 Polarization: -113.08 SS G_CDS: -3.69 Total: -116.77 kcal Atomic # 8 Polarization: -45.41 SS G_CDS: -2.04 Total: -47.44 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 1.67 Total: 42.51 kcal Total: -77.26 4.35 -72.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490905717.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.674 kcal (2) G-P(sol) polarization free energy of solvation -77.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds