Wall clock time and date at job start Sat Apr 11 2020 05:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30380 * 126.18442 * 2 1 4 4 N 1.28666 * 109.52225 * 179.97438 * 3 2 1 5 5 C 1.31220 * 109.25100 * 0.02562 * 4 3 2 6 6 C 1.47872 * 126.38054 * 180.02562 * 5 4 3 7 7 C 1.39670 * 120.07172 * 179.70252 * 6 5 4 8 8 C 1.38073 * 120.14483 * 179.71710 * 7 6 5 9 9 C 1.38090 * 120.29514 * 0.55439 * 8 7 6 10 10 C 1.39647 * 120.14429 * 359.71933 * 9 8 7 11 11 C 1.47867 * 120.07083 * 180.02562 * 10 9 8 12 12 O 1.21558 * 119.99643 * 134.40072 * 11 10 9 13 13 N 1.34770 * 120.00322 * 314.39937 * 11 10 9 14 14 C 1.46501 * 120.00133 * 185.88957 * 13 11 10 15 15 C 1.50700 * 109.47218 * 89.99618 * 14 13 11 16 16 H 1.07998 * 120.00026 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00275 * 180.02562 * 15 14 13 18 18 N 1.31520 * 119.99625 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00361 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47175 * 59.99847 * 19 17 15 21 21 H 1.48497 * 109.47282 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47061 * 300.00257 * 19 17 15 23 23 C 1.46495 * 119.99998 * 5.88917 * 13 11 10 24 24 C 1.53004 * 109.47132 * 98.11659 * 23 13 11 25 25 C 1.47202 * 109.46882 * 185.44380 * 24 23 13 26 26 N 9.12856 * 118.88543 * 343.24796 * 4 1 2 27 27 C 1.39284 * 120.07220 * 359.97077 * 6 5 4 28 28 O 1.34410 * 126.18548 * 179.68929 * 2 1 3 29 29 H 1.09000 * 109.46464 * 90.02356 * 1 2 3 30 30 H 1.09002 * 109.46780 * 210.02082 * 1 2 3 31 31 H 1.08996 * 109.46929 * 330.02471 * 1 2 3 32 32 H 1.07999 * 119.93233 * 359.96969 * 7 6 5 33 33 H 1.08001 * 119.84981 * 180.28031 * 8 7 6 34 34 H 1.08005 * 119.92645 * 179.70303 * 9 8 7 35 35 H 1.08995 * 109.47689 * 209.99860 * 14 13 11 36 36 H 1.09008 * 109.47224 * 330.00010 * 14 13 11 37 37 H 0.97001 * 119.99838 * 179.97438 * 18 17 15 38 38 H 1.09006 * 109.47209 * 218.11055 * 23 13 11 39 39 H 1.09001 * 109.47471 * 338.11287 * 23 13 11 40 40 H 1.08998 * 109.46525 * 305.43556 * 24 23 13 41 41 H 1.08995 * 109.47239 * 65.44175 * 24 23 13 42 42 H 1.08009 * 120.14881 * 0.02960 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2768 1.0523 0.0000 4 7 3.5094 0.6834 0.0005 5 6 3.5687 -0.6275 0.0004 6 6 4.7976 -1.4499 0.0014 7 6 4.7070 -2.8436 0.0073 8 6 5.8535 -3.6130 0.0023 9 6 7.0963 -3.0112 0.0030 10 6 7.2012 -1.6187 0.0028 11 6 8.5328 -0.9759 0.0030 12 8 8.7601 -0.0485 -0.7492 13 7 9.4945 -1.4183 0.8371 14 6 10.7692 -0.7023 0.9307 15 6 10.6756 0.3520 2.0035 16 1 9.7585 0.4761 2.5601 17 6 11.7608 1.1583 2.2742 18 7 12.8775 1.0076 1.5960 19 14 11.6450 2.4647 3.6044 20 1 11.3438 1.8191 4.9074 21 1 12.9367 3.1914 3.6983 22 1 10.5623 3.4226 3.2645 23 6 9.2653 -2.6150 1.6503 24 6 9.9050 -3.8257 0.9677 25 6 9.5644 -5.0472 1.7151 26 7 9.3007 -5.9881 2.2990 27 6 6.0480 -0.8363 0.0020 28 8 2.3006 -1.0848 0.0059 29 1 -0.3632 -0.0004 -1.0277 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3633 0.8902 0.5134 32 1 3.7381 -3.3206 0.0116 33 1 5.7778 -4.6904 0.0024 34 1 7.9892 -3.6188 0.0040 35 1 11.5635 -1.4055 1.1808 36 1 10.9911 -0.2287 -0.0257 37 1 13.6408 1.5751 1.7862 38 1 9.7108 -2.4759 2.6353 39 1 8.1934 -2.7822 1.7567 40 1 9.5301 -3.9076 -0.0525 41 1 10.9877 -3.7017 0.9482 42 1 6.1236 0.2411 0.0023 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000531281129.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:32 Heat of formation + Delta-G solvation = 44.866506 kcal Electronic energy + Delta-G solvation = -28162.940367 eV Core-core repulsion = 24109.859147 eV Total energy + Delta-G solvation = -4053.081219 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -45.29398 -41.55034 -39.47945 -38.08728 -37.35183 -36.76376 -35.04540 -34.44826 -32.60647 -32.39304 -32.04129 -29.28760 -28.86986 -25.89549 -25.52153 -25.35608 -24.01323 -23.11176 -22.93601 -20.60323 -19.10842 -18.63797 -18.59780 -18.32378 -17.96021 -17.72607 -17.17508 -16.55565 -16.51201 -16.11467 -15.75853 -15.53590 -15.28943 -14.86479 -14.74998 -14.42831 -14.34049 -14.15170 -13.79602 -13.69281 -13.63994 -13.57736 -13.52752 -13.23028 -13.07105 -13.00210 -12.85570 -12.69434 -12.55847 -12.50187 -12.16541 -12.04926 -11.93330 -11.70646 -11.26767 -10.81917 -10.58887 -10.14947 -9.69398 -9.56470 -8.19572 -6.31313 -0.72117 -0.07564 0.50319 0.99879 1.27360 1.39213 1.42780 1.48831 1.66056 1.78456 1.83045 2.19688 2.42526 2.61752 2.66963 3.03417 3.12990 3.30460 3.51277 3.65361 3.81036 3.88083 3.96397 4.02576 4.04135 4.14964 4.32148 4.35656 4.44262 4.56844 4.57285 4.70818 4.78857 4.79772 4.98584 5.03210 5.04844 5.15898 5.18786 5.22839 5.33549 5.55280 5.63500 5.83646 6.10766 6.58157 6.62385 6.77155 7.11971 7.23577 7.41236 8.87112 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009299 B = 0.003323 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3010.436099 B = 8424.270685 C =10661.731720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.177 3.823 3 N -0.331 5.331 4 N -0.317 5.317 5 C 0.211 3.789 6 C -0.042 4.042 7 C -0.051 4.051 8 C -0.105 4.105 9 C -0.068 4.068 10 C -0.129 4.129 11 C 0.547 3.453 12 O -0.581 6.581 13 N -0.586 5.586 14 C 0.258 3.742 15 C -0.546 4.546 16 H 0.051 0.949 17 C 0.016 3.984 18 N -0.921 5.921 19 Si 0.953 3.047 20 H -0.262 1.262 21 H -0.279 1.279 22 H -0.284 1.284 23 C 0.101 3.899 24 C -0.046 4.046 25 C 0.243 3.757 26 N -0.474 5.474 27 C -0.037 4.037 28 O -0.216 6.216 29 H 0.123 0.877 30 H 0.121 0.879 31 H 0.118 0.882 32 H 0.167 0.833 33 H 0.183 0.817 34 H 0.164 0.836 35 H 0.047 0.953 36 H 0.009 0.991 37 H 0.267 0.733 38 H 0.090 0.910 39 H 0.105 0.895 40 H 0.139 0.861 41 H 0.131 0.869 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.330 -14.380 -3.090 26.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.033 4.033 3 N -0.177 5.177 4 N -0.163 5.163 5 C 0.002 3.998 6 C -0.044 4.044 7 C -0.070 4.070 8 C -0.122 4.122 9 C -0.087 4.087 10 C -0.132 4.132 11 C 0.336 3.664 12 O -0.462 6.462 13 N -0.315 5.315 14 C 0.137 3.863 15 C -0.585 4.585 16 H 0.069 0.931 17 C -0.183 4.183 18 N -0.561 5.561 19 Si 0.779 3.221 20 H -0.187 1.187 21 H -0.204 1.204 22 H -0.210 1.210 23 C -0.023 4.023 24 C -0.086 4.086 25 C -0.075 4.075 26 N -0.152 5.152 27 C -0.058 4.058 28 O -0.096 6.096 29 H 0.141 0.859 30 H 0.139 0.861 31 H 0.137 0.863 32 H 0.184 0.816 33 H 0.201 0.799 34 H 0.181 0.819 35 H 0.065 0.935 36 H 0.027 0.973 37 H 0.076 0.924 38 H 0.108 0.892 39 H 0.123 0.877 40 H 0.156 0.844 41 H 0.149 0.851 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -22.047 -13.943 -2.596 26.215 hybrid contribution 0.388 0.923 0.355 1.063 sum -21.659 -13.020 -2.241 25.370 Atomic orbital electron populations 1.20803 0.75654 1.07632 1.07256 1.29263 0.99475 0.78395 0.96217 1.74365 0.96041 1.27396 1.19937 1.74741 1.13168 1.09938 1.18499 1.25537 0.84358 0.90071 0.99859 1.17102 0.85055 0.92834 1.09391 1.21731 1.01762 0.89876 0.93666 1.21489 0.89766 1.02397 0.98578 1.22249 1.01078 0.91714 0.93654 1.19715 0.91611 0.95394 1.06473 1.18731 0.84826 0.82698 0.80153 1.90770 1.82037 1.31338 1.42033 1.47976 1.16194 1.27348 1.39956 1.18924 0.80115 0.91448 0.95767 1.21710 0.98444 1.18675 1.19651 0.93097 1.25648 0.95016 0.99117 0.98551 1.69998 1.03485 1.40678 1.41929 0.85682 0.77188 0.79263 0.79985 1.18678 1.20446 1.20953 1.21803 1.02836 0.82394 0.95304 1.19930 1.05728 0.83991 0.98962 1.28974 0.91976 0.93785 0.92731 1.81367 1.10566 1.12961 1.10319 1.20955 0.90280 1.00110 0.94423 1.84813 1.16286 1.38144 1.70389 0.85915 0.86087 0.86333 0.81584 0.79930 0.81930 0.93464 0.97315 0.92436 0.89196 0.87708 0.84396 0.85130 0.86898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.34 10.51 71.24 0.75 0.41 16 2 C 0.18 3.48 8.47 88.33 0.75 4.23 16 3 N -0.33 -9.69 12.22 -165.33 -2.02 -11.71 16 4 N -0.32 -10.68 11.91 -166.30 -1.98 -12.66 16 5 C 0.21 5.76 7.99 87.34 0.70 6.46 16 6 C -0.04 -1.03 5.87 -20.13 -0.12 -1.15 16 7 C -0.05 -0.79 9.72 22.58 0.22 -0.57 16 8 C -0.10 -1.33 10.02 22.20 0.22 -1.11 16 9 C -0.07 -1.26 7.40 22.58 0.17 -1.09 16 10 C -0.13 -3.76 5.08 -20.12 -0.10 -3.86 16 11 C 0.55 21.52 7.27 86.79 0.63 22.15 16 12 O -0.58 -29.46 16.54 -3.90 -0.06 -29.52 16 13 N -0.59 -21.54 2.46 -829.53 -2.04 -23.58 16 14 C 0.26 12.37 5.22 85.63 0.45 12.81 16 15 C -0.55 -29.70 9.39 25.60 0.24 -29.46 16 16 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 17 C 0.02 0.91 5.46 84.65 0.46 1.37 16 18 N -0.92 -53.11 13.29 21.45 0.28 -52.82 16 19 Si 0.95 44.16 29.54 68.60 2.03 46.19 16 20 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 21 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 22 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 23 C 0.10 2.49 4.83 86.38 0.42 2.90 16 24 C -0.05 -0.77 5.10 28.79 0.15 -0.62 16 25 C 0.24 4.58 15.39 89.42 1.38 5.96 16 26 N -0.47 -11.47 18.55 20.03 0.37 -11.10 16 27 C -0.04 -1.15 9.34 22.79 0.21 -0.94 16 28 O -0.22 -4.59 10.66 -8.51 -0.09 -4.68 16 29 H 0.12 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.12 0.12 8.14 -2.39 -0.02 0.10 16 31 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.17 1.55 7.92 -2.91 -0.02 1.53 16 33 H 0.18 0.86 8.06 -2.91 -0.02 0.83 16 34 H 0.16 2.25 3.63 -2.91 -0.01 2.24 16 35 H 0.05 2.16 7.99 -2.39 -0.02 2.14 16 36 H 0.01 0.49 7.35 -2.38 -0.02 0.47 16 37 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 38 H 0.09 2.37 8.13 -2.38 -0.02 2.35 16 39 H 0.10 2.17 5.03 -2.39 -0.01 2.16 16 40 H 0.14 1.67 6.18 -2.39 -0.01 1.66 16 41 H 0.13 2.19 8.06 -2.39 -0.02 2.17 16 42 H 0.11 4.24 7.86 -2.91 -0.02 4.22 16 Total: -1.00 -84.59 374.31 4.09 -80.50 By element: Atomic # 1 Polarization: 0.79 SS G_CDS: 1.09 Total: 1.88 kcal Atomic # 6 Polarization: 10.98 SS G_CDS: 6.52 Total: 17.50 kcal Atomic # 7 Polarization: -106.48 SS G_CDS: -5.39 Total: -111.87 kcal Atomic # 8 Polarization: -34.05 SS G_CDS: -0.16 Total: -34.20 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -84.59 4.09 -80.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531281129.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.369 kcal (2) G-P(sol) polarization free energy of solvation -84.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds