Wall clock time and date at job start Sat Apr 11 2020 05:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38251 * 120.00020 * 2 1 4 4 C 1.38216 * 120.00452 * 179.97438 * 3 2 1 5 5 C 1.38256 * 119.99493 * 359.97438 * 4 3 2 6 6 S 1.76197 * 120.00083 * 180.02562 * 5 4 3 7 7 O 1.42100 * 106.40404 * 203.54089 * 6 5 4 8 8 O 1.42107 * 106.40239 * 336.45686 * 6 5 4 9 9 N 1.65594 * 107.21836 * 89.99654 * 6 5 4 10 10 C 1.46507 * 120.00140 * 65.00715 * 9 6 5 11 11 C 1.50697 * 109.47102 * 164.99953 * 10 9 6 12 12 O 1.21275 * 120.00289 * 359.97438 * 11 10 9 13 13 N 1.34782 * 119.99585 * 179.97438 * 11 10 9 14 14 C 1.46502 * 119.99970 * 359.97438 * 13 11 10 15 15 C 1.46495 * 119.99897 * 179.97438 * 13 11 10 16 16 C 1.50703 * 109.46886 * 90.00103 * 15 13 11 17 17 H 1.07997 * 120.00194 * 0.02562 * 16 15 13 18 18 C 1.37881 * 119.99821 * 179.97438 * 16 15 13 19 19 N 1.31511 * 120.00326 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99603 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47656 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47047 * 120.00290 * 20 18 16 23 23 H 1.48503 * 109.47271 * 239.99990 * 20 18 16 24 24 C 1.38214 * 120.00052 * 0.02562 * 5 4 3 25 25 C 1.38218 * 119.99968 * 179.72146 * 2 1 3 26 26 C 1.50695 * 119.99818 * 0.02562 * 25 2 1 27 27 H 1.09002 * 109.47152 * 90.00315 * 1 2 3 28 28 H 1.09001 * 109.46980 * 330.00416 * 1 2 3 29 29 H 1.09004 * 109.47113 * 210.00397 * 1 2 3 30 30 H 1.08009 * 120.00152 * 359.97438 * 3 2 1 31 31 H 1.07994 * 120.00533 * 180.02562 * 4 3 2 32 32 H 0.97006 * 120.00294 * 244.99787 * 9 6 5 33 33 H 1.09003 * 109.46234 * 284.99704 * 10 9 6 34 34 H 1.08994 * 109.46899 * 44.99186 * 10 9 6 35 35 H 1.08999 * 109.47414 * 89.99825 * 14 13 11 36 36 H 1.08998 * 109.47202 * 209.99820 * 14 13 11 37 37 H 1.09001 * 109.46840 * 329.99947 * 14 13 11 38 38 H 1.09000 * 109.47159 * 210.00207 * 15 13 11 39 39 H 1.09003 * 109.47192 * 330.00211 * 15 13 11 40 40 H 0.96996 * 120.00335 * 180.02562 * 19 18 16 41 41 H 1.08000 * 120.00080 * 180.02562 * 24 5 4 42 42 H 1.08995 * 109.47734 * 90.00064 * 26 25 2 43 43 H 1.09002 * 109.46829 * 210.00009 * 26 25 2 44 44 H 1.09000 * 109.47496 * 329.99322 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0016 6 16 6.0337 0.0000 0.0030 7 8 6.4354 -1.2500 -0.5406 8 8 6.4354 1.2495 -0.5418 9 7 6.5226 0.0008 1.5851 10 6 6.2267 -1.1487 2.4439 11 6 7.0717 -1.0758 3.6895 12 8 7.8452 -0.1547 3.8446 13 7 6.9677 -2.0343 4.6314 14 6 6.0328 -3.1467 4.4443 15 6 7.7894 -1.9638 5.8421 16 6 7.0517 -1.1919 6.9056 17 1 6.0689 -0.7941 6.7003 18 6 7.6311 -0.9946 8.1411 19 7 8.8277 -1.4794 8.3913 20 14 6.7163 -0.0384 9.4595 21 1 5.3991 0.3978 8.9307 22 1 6.5109 -0.9058 10.6473 23 1 7.5121 1.1535 9.8487 24 6 3.5806 -1.1969 0.0016 25 6 2.1981 -1.1970 0.0058 26 6 1.4446 -2.5020 0.0116 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 0.8900 0.5138 29 1 -0.3633 -0.8900 0.5139 30 1 1.6583 2.1327 -0.0004 31 1 4.1204 2.1326 0.0010 32 1 7.0051 0.7623 1.9433 33 1 5.1721 -1.1347 2.7188 34 1 6.4500 -2.0705 1.9067 35 1 6.5383 -3.9634 3.9289 36 1 5.6809 -3.4929 5.4161 37 1 5.1838 -2.8114 3.8487 38 1 7.9944 -2.9723 6.2013 39 1 8.7295 -1.4611 5.6144 40 1 9.2351 -1.3409 9.2606 41 1 4.1206 -2.1322 0.0029 42 1 1.2633 -2.8215 -1.0146 43 1 2.0335 -3.2593 0.5292 44 1 0.4920 -2.3694 0.5245 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000554262804.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:37 Heat of formation + Delta-G solvation = -86.209041 kcal Electronic energy + Delta-G solvation = -27410.699243 eV Core-core repulsion = 23455.085362 eV Total energy + Delta-G solvation = -3955.613881 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.93573 -39.20244 -37.31143 -35.93375 -35.20845 -34.43958 -33.90683 -32.64749 -32.59088 -28.55557 -28.16785 -26.99545 -26.77956 -25.51373 -22.72388 -22.61020 -21.82627 -19.50293 -18.91851 -17.96802 -17.46671 -16.69704 -16.54955 -16.12290 -15.84469 -15.67591 -15.31983 -14.95289 -14.72415 -14.59706 -14.48452 -13.78792 -13.55399 -13.41626 -13.22323 -13.08650 -12.72749 -12.53266 -12.43385 -12.28331 -12.21095 -12.14627 -12.10841 -12.06879 -12.05418 -11.85189 -11.43272 -11.25935 -10.93323 -10.90442 -10.64501 -10.22047 -9.73983 -9.63804 -9.40770 -9.12218 -9.07274 -8.48833 -7.76855 -6.09484 -4.14626 0.22947 0.55605 0.97240 2.81148 3.17232 3.22672 3.26320 3.34458 3.37952 3.68066 3.82005 4.15536 4.35489 4.39913 4.45607 4.52078 4.76603 4.81654 4.87943 5.03682 5.07563 5.18867 5.23417 5.25516 5.27746 5.31147 5.39505 5.43245 5.52695 5.62580 5.66786 5.75153 5.79229 5.85840 5.90253 6.13170 6.15140 6.54012 6.94099 7.00811 7.36893 7.43186 7.86228 8.16480 8.26639 8.79366 8.94600 9.50601 10.98719 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012303 B = 0.003046 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.306445 B = 9189.711342 C =10061.238920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.033 4.033 3 C -0.139 4.139 4 C -0.019 4.019 5 C -0.678 4.678 6 S 2.701 3.299 7 O -0.957 6.957 8 O -0.957 6.957 9 N -1.101 6.101 10 C 0.096 3.904 11 C 0.504 3.496 12 O -0.533 6.533 13 N -0.598 5.598 14 C 0.078 3.922 15 C 0.244 3.756 16 C -0.528 4.528 17 H 0.058 0.942 18 C 0.061 3.939 19 N -0.893 5.893 20 Si 0.899 3.101 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.282 1.282 24 C -0.018 4.018 25 C -0.109 4.109 26 C -0.119 4.119 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.132 0.868 31 H 0.141 0.859 32 H 0.429 0.571 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.050 0.950 36 H 0.078 0.922 37 H 0.057 0.943 38 H 0.035 0.965 39 H 0.045 0.955 40 H 0.263 0.737 41 H 0.141 0.859 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.659 -1.520 -18.143 25.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.033 4.033 3 C -0.158 4.158 4 C -0.038 4.038 5 C -0.765 4.765 6 S 2.790 3.210 7 O -0.947 6.947 8 O -0.947 6.947 9 N -0.866 5.866 10 C -0.034 4.034 11 C 0.288 3.712 12 O -0.410 6.410 13 N -0.330 5.330 14 C -0.066 4.066 15 C 0.125 3.875 16 C -0.567 4.567 17 H 0.076 0.924 18 C -0.141 4.141 19 N -0.532 5.532 20 Si 0.727 3.273 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.208 1.208 24 C -0.037 4.037 25 C -0.110 4.110 26 C -0.175 4.175 27 H 0.096 0.904 28 H 0.090 0.910 29 H 0.095 0.905 30 H 0.150 0.850 31 H 0.159 0.841 32 H 0.269 0.731 33 H 0.107 0.893 34 H 0.122 0.878 35 H 0.068 0.932 36 H 0.097 0.903 37 H 0.076 0.924 38 H 0.053 0.947 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.159 0.841 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -16.654 -1.222 -18.674 25.051 hybrid contribution -1.049 0.822 1.357 1.902 sum -17.703 -0.400 -17.317 24.767 Atomic orbital electron populations 1.21010 0.90714 1.03617 1.02932 1.20115 0.96385 0.92802 0.94041 1.21166 0.94161 0.97920 1.02528 1.20913 0.94700 0.96652 0.91517 1.30969 1.27207 0.99525 1.18773 1.01668 0.73584 0.73676 0.72105 1.93580 1.80562 1.44266 1.76314 1.93595 1.81413 1.43712 1.75996 1.55218 1.72399 1.28513 1.30428 1.21185 1.00103 0.89523 0.92559 1.20021 0.83965 0.83138 0.84080 1.90667 1.38630 1.33387 1.78289 1.48133 1.40863 1.22976 1.21029 1.21732 0.92469 0.89666 1.02769 1.19357 0.91035 0.97749 0.79339 1.21451 1.03277 1.34939 0.97051 0.92357 1.24943 0.94952 0.95736 0.98491 1.69936 1.14695 1.45473 1.23117 0.86430 0.79799 0.79768 0.81315 1.19845 1.20935 1.20842 1.20835 0.94022 0.96661 0.92222 1.19891 0.93662 0.95399 1.02070 1.20892 1.00263 0.93645 1.02738 0.90390 0.90987 0.90483 0.85036 0.84133 0.73147 0.89283 0.87847 0.93169 0.90348 0.92411 0.94695 0.93648 0.92688 0.84087 0.90852 0.90936 0.90868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.69 9.61 36.01 0.35 -0.35 16 2 C -0.03 -0.28 5.88 -104.62 -0.62 -0.89 16 3 C -0.14 -1.25 9.70 -39.58 -0.38 -1.63 16 4 C -0.02 -0.19 9.52 -39.58 -0.38 -0.57 16 5 C -0.68 -7.62 5.95 -39.58 -0.24 -7.86 16 6 S 2.70 35.20 5.74 -107.50 -0.62 34.59 16 7 O -0.96 -14.22 16.75 -57.17 -0.96 -15.18 16 8 O -0.96 -14.63 17.28 -57.17 -0.99 -15.62 16 9 N -1.10 -15.26 5.93 -11.65 -0.07 -15.33 16 10 C 0.10 1.35 5.26 -5.19 -0.03 1.32 16 11 C 0.50 9.91 7.74 -10.98 -0.09 9.83 16 12 O -0.53 -12.71 15.31 5.56 0.09 -12.62 16 13 N -0.60 -12.01 2.86 -182.96 -0.52 -12.53 16 14 C 0.08 1.11 10.24 59.85 0.61 1.73 16 15 C 0.24 6.20 5.16 -5.19 -0.03 6.17 16 16 C -0.53 -14.60 9.39 -34.44 -0.32 -14.92 16 17 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 19 N -0.89 -26.15 13.29 55.43 0.74 -25.41 16 20 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 C -0.02 -0.18 9.18 -39.58 -0.36 -0.55 16 25 C -0.11 -0.97 5.88 -104.63 -0.62 -1.58 16 26 C -0.12 -0.73 9.60 36.00 0.35 -0.38 16 27 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 29 H 0.08 0.36 5.94 -51.93 -0.31 0.05 16 30 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 31 H 0.14 1.33 7.62 -52.49 -0.40 0.93 16 32 H 0.43 6.32 7.70 -34.47 -0.27 6.06 16 33 H 0.09 1.00 7.40 -51.93 -0.38 0.62 16 34 H 0.10 1.22 7.72 -51.93 -0.40 0.82 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 1.16 8.07 -51.93 -0.42 0.74 16 37 H 0.06 0.63 6.44 -51.93 -0.33 0.30 16 38 H 0.04 0.89 8.07 -51.93 -0.42 0.47 16 39 H 0.05 1.30 7.42 -51.93 -0.39 0.92 16 40 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 41 H 0.14 1.23 7.62 -52.49 -0.40 0.83 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 44 H 0.07 0.36 5.94 -51.93 -0.31 0.05 16 LS Contribution 381.30 15.07 5.75 5.75 Total: -1.00 -36.69 381.30 -9.55 -46.25 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -6.10 Total: 1.74 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -1.84 Total: -8.07 kcal Atomic # 7 Polarization: -53.42 SS G_CDS: 0.14 Total: -53.28 kcal Atomic # 8 Polarization: -41.56 SS G_CDS: -1.86 Total: -43.42 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: 35.20 SS G_CDS: -0.62 Total: 34.59 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.69 -9.55 -46.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554262804.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.961 kcal (2) G-P(sol) polarization free energy of solvation -36.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds