Wall clock time and date at job start Sat Apr 11 2020 05:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 112.99540 * 2 1 4 4 S 1.81402 * 109.46996 * 50.33776 * 3 2 1 5 5 O 1.42102 * 110.54374 * 68.37542 * 4 3 2 6 6 O 1.42100 * 110.54269 * 291.62105 * 4 3 2 7 7 N 1.65605 * 104.44919 * 179.97438 * 4 3 2 8 8 C 1.46497 * 119.99944 * 269.99986 * 7 4 3 9 9 C 1.50700 * 109.47015 * 265.00210 * 8 7 4 10 10 H 1.08000 * 120.00050 * 359.97438 * 9 8 7 11 11 C 1.37878 * 119.99841 * 180.02562 * 9 8 7 12 12 N 1.31515 * 120.00485 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 119.99874 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47266 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.47474 * 119.99643 * 13 11 9 16 16 H 1.48501 * 109.47473 * 239.99779 * 13 11 9 17 17 C 1.46493 * 120.00041 * 89.99617 * 7 4 3 18 18 C 1.50706 * 109.47190 * 94.99988 * 17 7 4 19 19 C 1.38675 * 120.41529 * 89.99861 * 18 17 7 20 20 C 1.38631 * 118.41792 * 179.97438 * 19 18 17 21 21 C 1.38221 * 119.16077 * 0.25627 * 20 19 18 22 22 N 1.31860 * 120.76509 * 359.49797 * 21 20 19 23 23 C 1.31882 * 121.72556 * 0.49011 * 22 21 20 24 24 C 1.54028 * 113.82304 * 131.82861 * 2 1 3 25 25 O 1.44442 * 85.42909 * 91.80680 * 24 2 1 26 26 C 1.44181 * 93.37637 * 24.09223 * 25 24 2 27 27 H 1.09000 * 109.47715 * 59.99888 * 1 2 3 28 28 H 1.09006 * 109.47057 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47392 * 299.98964 * 1 2 3 30 30 H 1.08994 * 109.47486 * 290.33656 * 3 2 1 31 31 H 1.09003 * 109.46920 * 170.33211 * 3 2 1 32 32 H 1.09007 * 109.47136 * 24.99550 * 8 7 4 33 33 H 1.08997 * 109.47436 * 144.99726 * 8 7 4 34 34 H 0.96994 * 120.00230 * 180.02562 * 12 11 9 35 35 H 1.09008 * 109.47517 * 335.00074 * 17 7 4 36 36 H 1.08998 * 109.47567 * 214.99924 * 17 7 4 37 37 H 1.07998 * 120.79161 * 359.96013 * 19 18 17 38 38 H 1.08002 * 120.41548 * 179.97438 * 20 19 18 39 39 H 1.08002 * 119.62066 * 179.74470 * 21 20 19 40 40 H 1.07993 * 119.62126 * 179.75488 * 23 22 21 41 41 H 1.08998 * 113.86898 * 205.92039 * 24 2 1 42 42 H 1.09008 * 113.86360 * 337.62022 * 24 2 1 43 43 H 1.09001 * 113.86653 * 221.76609 * 26 25 24 44 44 H 1.08999 * 113.98371 * 90.06840 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1277 1.4085 0.0000 4 16 1.3590 2.3915 1.3166 5 8 1.7476 1.9049 2.5939 6 8 -0.0055 2.6490 1.0148 7 7 2.0891 3.8738 1.2055 8 6 3.3108 4.1474 1.9663 9 6 2.9530 4.8214 3.2657 10 1 1.9190 5.0259 3.5012 11 6 3.9457 5.1779 4.1536 12 7 5.2049 4.9294 3.8668 13 14 3.5022 6.0141 5.7641 14 1 2.0288 6.1800 5.8464 15 1 3.9711 5.1807 6.9002 16 1 4.1541 7.3469 5.8258 17 6 1.5134 4.9113 0.3464 18 6 0.6269 5.8101 1.1694 19 6 1.1482 6.9387 1.7840 20 6 0.2953 7.7366 2.5309 21 6 -1.0356 7.3804 2.6417 22 7 -1.4977 6.3023 2.0395 23 6 -0.7157 5.5204 1.3208 24 6 2.1521 -0.9397 1.0499 25 8 2.1471 -1.9296 -0.0019 26 6 2.1520 -0.9396 -1.0502 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8901 30 1 1.9409 1.8825 -0.9635 31 1 3.2022 1.3471 0.1726 32 1 3.8274 3.2101 2.1734 33 1 3.9620 4.8005 1.3854 34 1 5.9032 5.1799 4.4916 35 1 0.9244 4.4440 -0.4429 36 1 2.3150 5.5006 -0.0988 37 1 2.1937 7.1898 1.6834 38 1 0.6672 8.6228 3.0236 39 1 -1.7057 7.9945 3.2251 40 1 -1.1294 4.6434 0.8454 41 1 3.1503 -0.6426 1.3713 42 1 1.4869 -1.1742 1.8811 43 1 1.4868 -1.1741 -1.8813 44 1 3.1493 -0.6413 -1.3731 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000562823454.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:41 Heat of formation + Delta-G solvation = -63.343085 kcal Electronic energy + Delta-G solvation = -29039.160805 eV Core-core repulsion = 25084.538466 eV Total energy + Delta-G solvation = -3954.622339 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.71086 -40.96429 -38.06677 -37.53424 -36.81779 -34.68481 -34.50663 -33.21933 -32.32108 -29.36010 -28.87622 -27.62879 -26.83005 -26.67541 -24.48376 -24.19768 -22.80929 -20.24346 -19.62914 -18.70953 -18.56103 -17.89618 -17.60320 -17.30130 -17.14142 -16.91407 -16.71632 -16.41182 -16.27585 -16.06506 -15.27702 -14.75198 -14.66260 -14.52246 -14.33403 -14.10776 -13.95765 -13.79601 -13.46435 -13.34516 -13.18362 -13.11309 -12.96747 -12.92716 -12.77822 -12.60841 -12.47014 -12.37462 -12.34947 -11.85662 -11.74310 -11.66799 -11.18329 -10.71741 -10.61353 -10.48173 -10.37003 -9.90473 -9.63972 -8.16642 -6.21849 -0.65766 0.29176 0.52349 1.32568 1.38276 1.47364 1.87222 2.41252 2.58594 2.91606 2.97928 3.04242 3.16975 3.33601 3.42692 3.65585 3.70651 3.88307 4.03021 4.08560 4.18141 4.23258 4.30046 4.34695 4.37157 4.46576 4.55179 4.66028 4.69837 4.75398 4.78045 4.85553 4.87736 4.99365 5.07633 5.09942 5.17934 5.24881 5.35256 5.43695 5.61049 5.74667 5.90892 5.96233 6.19042 6.84920 7.13267 7.44664 8.91083 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011860 B = 0.004899 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.374518 B = 5713.974672 C = 7293.852625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.123 4.123 3 C -0.608 4.608 4 S 2.593 3.407 5 O -0.991 6.991 6 O -0.974 6.974 7 N -0.988 5.988 8 C 0.268 3.732 9 C -0.513 4.513 10 H 0.043 0.957 11 C 0.020 3.980 12 N -0.922 5.922 13 Si 0.932 3.068 14 H -0.278 1.278 15 H -0.287 1.287 16 H -0.268 1.268 17 C 0.169 3.831 18 C -0.157 4.157 19 C -0.043 4.043 20 C -0.188 4.188 21 C 0.081 3.919 22 N -0.520 5.520 23 C 0.095 3.905 24 C 0.022 3.978 25 O -0.396 6.396 26 C 0.060 3.940 27 H 0.099 0.901 28 H 0.087 0.913 29 H 0.050 0.950 30 H 0.175 0.825 31 H 0.147 0.853 32 H 0.019 0.981 33 H 0.038 0.962 34 H 0.264 0.736 35 H 0.113 0.887 36 H 0.105 0.895 37 H 0.137 0.863 38 H 0.151 0.849 39 H 0.176 0.824 40 H 0.165 0.835 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.120 0.880 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.723 -2.956 -13.686 15.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.125 4.125 3 C -0.739 4.739 4 S 2.691 3.309 5 O -0.982 6.982 6 O -0.965 6.965 7 N -0.824 5.824 8 C 0.144 3.856 9 C -0.553 4.553 10 H 0.061 0.939 11 C -0.179 4.179 12 N -0.563 5.563 13 Si 0.759 3.241 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.193 1.193 17 C 0.043 3.957 18 C -0.161 4.161 19 C -0.070 4.070 20 C -0.208 4.208 21 C -0.076 4.076 22 N -0.229 5.229 23 C -0.062 4.062 24 C -0.055 4.055 25 O -0.315 6.315 26 C -0.017 4.017 27 H 0.118 0.882 28 H 0.106 0.894 29 H 0.069 0.931 30 H 0.193 0.807 31 H 0.165 0.835 32 H 0.037 0.963 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.131 0.869 36 H 0.123 0.877 37 H 0.154 0.846 38 H 0.169 0.831 39 H 0.193 0.807 40 H 0.183 0.817 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.138 0.862 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -7.079 -3.644 -12.899 15.159 hybrid contribution 1.463 0.825 1.131 2.024 sum -5.616 -2.819 -11.768 13.341 Atomic orbital electron populations 1.22061 0.90753 1.04741 1.04271 1.23525 0.98032 0.91841 0.99073 1.30603 1.13995 1.08450 1.20886 1.05336 0.74683 0.74409 0.76471 1.93572 1.84004 1.81202 1.39423 1.93489 1.32443 1.84134 1.86403 1.57438 1.40122 1.26802 1.58057 1.18713 0.81035 0.96121 0.89705 1.21655 0.92490 1.37429 1.03729 0.93859 1.25443 0.95018 0.96971 1.00454 1.69965 0.99767 1.49008 1.37599 0.85903 0.78095 0.78988 0.81164 1.20342 1.21311 1.19304 1.20243 0.96073 0.89056 0.90287 1.21420 0.95729 0.97183 1.01729 1.21695 1.00034 0.92768 0.92497 1.22383 0.95050 1.02379 1.00946 1.23150 0.94600 0.93543 0.96324 1.67673 1.40276 1.05816 1.09185 1.23077 0.90688 0.97564 0.94874 1.24457 1.01753 0.86786 0.92484 1.89694 1.95941 1.28238 1.17630 1.24294 1.01971 0.83840 0.91601 0.88234 0.89374 0.93123 0.80675 0.83499 0.96283 0.94358 0.92701 0.86937 0.87706 0.84562 0.83092 0.80708 0.81749 0.88991 0.88808 0.86157 0.87827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.39 8.25 71.98 0.59 -2.80 16 2 C -0.12 -2.62 1.06 -51.48 -0.05 -2.67 16 3 C -0.61 -12.97 5.70 71.98 0.41 -12.56 16 4 S 2.59 87.92 4.57 -56.49 -0.26 87.67 16 5 O -0.99 -44.65 16.98 -127.65 -2.17 -46.82 16 6 O -0.97 -33.44 12.73 -127.65 -1.62 -35.06 16 7 N -0.99 -35.25 2.72 -523.92 -1.42 -36.68 16 8 C 0.27 12.09 5.03 85.63 0.43 12.52 16 9 C -0.51 -27.03 8.05 25.60 0.21 -26.82 16 10 H 0.04 2.41 6.83 -2.91 -0.02 2.39 16 11 C 0.02 1.09 5.46 84.65 0.46 1.55 16 12 N -0.92 -51.45 13.29 21.45 0.28 -51.17 16 13 Si 0.93 43.98 29.54 68.60 2.03 46.01 16 14 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 15 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 16 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 17 C 0.17 4.89 5.46 85.64 0.47 5.36 16 18 C -0.16 -5.36 4.83 -19.77 -0.10 -5.46 16 19 C -0.04 -1.48 8.21 22.47 0.18 -1.30 16 20 C -0.19 -5.91 10.11 22.36 0.23 -5.68 16 21 C 0.08 2.57 11.18 84.68 0.95 3.51 16 22 N -0.52 -19.01 10.36 -195.85 -2.03 -21.04 16 23 C 0.09 3.41 10.30 84.67 0.87 4.28 16 24 C 0.02 0.56 8.37 72.29 0.61 1.16 16 25 O -0.40 -9.67 12.38 -148.98 -1.84 -11.51 16 26 C 0.06 1.02 8.37 72.30 0.60 1.62 16 27 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.09 1.65 8.09 -2.38 -0.02 1.63 16 29 H 0.05 1.31 5.87 -2.39 -0.01 1.30 16 30 H 0.18 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.15 2.92 7.98 -2.39 -0.02 2.90 16 32 H 0.02 0.94 7.61 -2.38 -0.02 0.92 16 33 H 0.04 1.71 8.00 -2.39 -0.02 1.69 16 34 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 35 H 0.11 2.40 7.56 -2.38 -0.02 2.39 16 36 H 0.10 2.59 7.96 -2.39 -0.02 2.57 16 37 H 0.14 4.62 8.06 -2.91 -0.02 4.60 16 38 H 0.15 3.88 8.06 -2.91 -0.02 3.86 16 39 H 0.18 4.29 8.06 -2.91 -0.02 4.27 16 40 H 0.17 5.70 6.50 -2.91 -0.02 5.68 16 41 H 0.09 2.30 7.99 -2.39 -0.02 2.28 16 42 H 0.09 2.43 8.10 -2.38 -0.02 2.41 16 43 H 0.12 1.41 8.10 -2.39 -0.02 1.39 16 44 H 0.10 1.38 8.10 -2.39 -0.02 1.36 16 Total: -1.00 -73.65 371.71 -0.18 -73.82 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: 1.00 Total: 22.08 kcal Atomic # 6 Polarization: -33.16 SS G_CDS: 5.86 Total: -27.29 kcal Atomic # 7 Polarization: -105.72 SS G_CDS: -3.17 Total: -108.88 kcal Atomic # 8 Polarization: -87.76 SS G_CDS: -5.64 Total: -93.40 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 16 Polarization: 87.92 SS G_CDS: -0.26 Total: 87.67 kcal Total: -73.65 -0.18 -73.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562823454.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.481 kcal (2) G-P(sol) polarization free energy of solvation -73.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds