Wall clock time and date at job start Sat Apr 11 2020 05:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38251 * 119.99861 * 2 1 4 4 C 1.38220 * 119.99998 * 180.02562 * 3 2 1 5 5 C 1.38255 * 119.99812 * 359.97438 * 4 3 2 6 6 C 1.50698 * 119.99873 * 179.97438 * 5 4 3 7 7 C 1.38209 * 120.00045 * 0.02562 * 5 4 3 8 8 S 1.76203 * 119.99977 * 179.97438 * 7 5 4 9 9 O 1.42096 * 106.40259 * 311.23332 * 8 7 5 10 10 O 1.42101 * 106.40340 * 178.31070 * 8 7 5 11 11 N 1.65603 * 107.21809 * 64.77306 * 8 7 5 12 12 C 1.46496 * 120.00144 * 63.50482 * 11 8 7 13 13 C 1.50709 * 109.47000 * 163.20029 * 12 11 8 14 14 O 1.21282 * 119.99593 * 0.02562 * 13 12 11 15 15 N 1.34767 * 119.99878 * 180.02562 * 13 12 11 16 16 C 1.46508 * 119.99978 * 359.97438 * 15 13 12 17 17 C 1.46499 * 119.99962 * 180.02562 * 15 13 12 18 18 C 1.50694 * 109.47338 * 89.99767 * 17 15 13 19 19 H 1.08003 * 120.00216 * 359.97438 * 18 17 15 20 20 C 1.37883 * 120.00274 * 180.02562 * 18 17 15 21 21 N 1.31510 * 119.99684 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00049 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47265 * 359.97438 * 22 20 18 24 24 H 1.48505 * 109.46974 * 119.99968 * 22 20 18 25 25 H 1.48496 * 109.46921 * 239.99528 * 22 20 18 26 26 C 1.38218 * 119.99787 * 180.27341 * 2 1 3 27 27 H 1.08995 * 109.46845 * 90.00320 * 1 2 3 28 28 H 1.09005 * 109.46866 * 209.99927 * 1 2 3 29 29 H 1.08993 * 109.47408 * 329.99639 * 1 2 3 30 30 H 1.08000 * 119.99918 * 0.02562 * 3 2 1 31 31 H 1.07996 * 119.99852 * 179.97438 * 4 3 2 32 32 H 1.08996 * 109.47151 * 264.59234 * 6 5 4 33 33 H 1.09001 * 109.46946 * 24.59104 * 6 5 4 34 34 H 1.09001 * 109.47249 * 144.59015 * 6 5 4 35 35 H 0.97001 * 119.99556 * 243.23241 * 11 8 7 36 36 H 1.08995 * 109.47507 * 283.20004 * 12 11 8 37 37 H 1.09000 * 109.46923 * 43.20631 * 12 11 8 38 38 H 1.09001 * 109.46696 * 90.01010 * 16 15 13 39 39 H 1.09003 * 109.46976 * 210.00090 * 16 15 13 40 40 H 1.08997 * 109.47295 * 330.00537 * 16 15 13 41 41 H 1.08999 * 109.47091 * 209.99651 * 17 15 13 42 42 H 1.08998 * 109.47280 * 329.99011 * 17 15 13 43 43 H 0.96996 * 120.00421 * 180.02562 * 21 20 18 44 44 H 1.07996 * 120.00354 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2717 0.0000 -0.0005 6 6 5.7787 0.0000 -0.0017 7 6 3.5807 -1.1969 -0.0005 8 16 4.4617 -2.7229 -0.0012 9 8 5.4400 -2.6209 -1.0267 10 8 3.4823 -3.7517 0.0391 11 7 5.2912 -2.8106 1.4294 12 6 4.5604 -2.8593 2.6981 13 6 5.4802 -3.3432 3.7895 14 8 6.6328 -3.6197 3.5327 15 7 5.0219 -3.4687 5.0506 16 6 3.6297 -3.1341 5.3607 17 6 5.9162 -3.9385 6.1116 18 6 6.6047 -2.7585 6.7475 19 1 6.3972 -1.7585 6.3962 20 6 7.5003 -2.9555 7.7772 21 7 7.7533 -4.1732 8.2046 22 14 8.3542 -1.4928 8.5650 23 1 7.9004 -0.2413 7.9070 24 1 8.0177 -1.4427 10.0105 25 1 9.8238 -1.6317 8.4035 26 6 2.1981 -1.1970 -0.0057 27 1 -0.3633 -0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5138 30 1 1.6582 2.1326 0.0004 31 1 4.1204 2.1326 -0.0010 32 1 6.1412 -0.0973 -1.0250 33 1 6.1423 0.9347 0.4253 34 1 6.1425 -0.8373 0.5938 35 1 6.2609 -2.8338 1.4270 36 1 4.1957 -1.8625 2.9458 37 1 3.7161 -3.5424 2.6051 38 1 3.0075 -4.0210 5.2407 39 1 3.5617 -2.7792 6.3891 40 1 3.2840 -2.3533 4.6833 41 1 5.3368 -4.4709 6.8658 42 1 6.6629 -4.6094 5.6868 43 1 8.3830 -4.3119 8.9292 44 1 1.6581 -2.1323 -0.0106 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573077913.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:43 Heat of formation + Delta-G solvation = -110.182721 kcal Electronic energy + Delta-G solvation = -27771.546814 eV Core-core repulsion = 23814.893356 eV Total energy + Delta-G solvation = -3956.653458 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.76687 -40.51741 -38.47960 -37.05970 -36.80194 -35.85597 -34.86057 -34.67725 -32.28676 -30.41525 -30.16358 -28.11787 -27.10177 -25.90899 -24.54884 -24.37306 -22.36518 -20.66695 -20.32979 -18.93380 -18.69842 -18.19541 -17.82948 -17.30812 -17.04231 -16.69901 -16.55604 -16.50329 -15.95765 -15.35100 -15.23747 -15.11511 -14.73378 -14.27213 -14.15450 -13.94835 -13.90161 -13.64839 -13.57762 -13.47293 -13.36972 -13.26291 -13.24677 -13.10539 -13.07118 -12.83428 -12.77240 -12.66174 -12.53213 -12.20402 -12.17511 -11.72386 -11.66565 -10.88544 -10.64434 -10.56684 -10.35568 -9.56492 -9.45729 -8.21960 -6.36545 -0.76172 -0.20764 0.27791 1.37804 1.40228 1.51576 1.71431 1.78336 2.29208 2.40429 2.47049 2.68286 3.08339 3.30111 3.50875 3.67101 3.79127 3.94317 4.10254 4.16177 4.22620 4.27136 4.40488 4.48278 4.54479 4.57650 4.66195 4.75541 4.77304 4.87159 4.93463 4.98469 5.04154 5.08458 5.11478 5.24107 5.29451 5.34500 5.48471 5.55095 5.80145 5.82076 5.90037 6.05685 6.67077 6.75138 7.25221 7.39962 8.85520 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013872 B = 0.003062 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.982855 B = 9143.470146 C = 9464.898931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.116 4.116 3 C -0.058 4.058 4 C -0.142 4.142 5 C 0.003 3.997 6 C -0.155 4.155 7 C -0.682 4.682 8 S 2.713 3.287 9 O -0.980 6.980 10 O -0.982 6.982 11 N -1.108 6.108 12 C 0.108 3.892 13 C 0.494 3.506 14 O -0.585 6.585 15 N -0.605 5.605 16 C 0.069 3.931 17 C 0.257 3.743 18 C -0.541 4.541 19 H 0.057 0.943 20 C 0.006 3.994 21 N -0.929 5.929 22 Si 0.969 3.031 23 H -0.264 1.264 24 H -0.271 1.271 25 H -0.284 1.284 26 C -0.034 4.034 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.161 0.839 31 H 0.155 0.845 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.062 0.938 35 H 0.425 0.575 36 H 0.125 0.875 37 H 0.128 0.872 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.098 0.902 41 H 0.027 0.973 42 H -0.001 1.001 43 H 0.267 0.733 44 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.388 13.512 -16.440 27.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.117 4.117 3 C -0.076 4.076 4 C -0.161 4.161 5 C 0.001 3.999 6 C -0.212 4.212 7 C -0.772 4.772 8 S 2.807 3.193 9 O -0.970 6.970 10 O -0.972 6.972 11 N -0.870 5.870 12 C -0.021 4.021 13 C 0.281 3.719 14 O -0.466 6.466 15 N -0.336 5.336 16 C -0.073 4.073 17 C 0.136 3.864 18 C -0.579 4.579 19 H 0.076 0.924 20 C -0.193 4.193 21 N -0.569 5.569 22 Si 0.793 3.207 23 H -0.188 1.188 24 H -0.196 1.196 25 H -0.210 1.210 26 C -0.054 4.054 27 H 0.099 0.901 28 H 0.094 0.906 29 H 0.104 0.896 30 H 0.178 0.822 31 H 0.173 0.827 32 H 0.112 0.888 33 H 0.121 0.879 34 H 0.080 0.920 35 H 0.263 0.737 36 H 0.143 0.857 37 H 0.146 0.854 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.117 0.883 41 H 0.045 0.955 42 H 0.017 0.983 43 H 0.076 0.924 44 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -16.899 12.605 -17.056 27.118 hybrid contribution 1.206 0.665 0.973 1.687 sum -15.694 13.270 -16.083 26.097 Atomic orbital electron populations 1.20889 0.88468 1.04339 1.03508 1.20375 0.98054 0.92567 1.00750 1.21771 0.94108 0.98959 0.92731 1.21510 0.95023 0.97908 1.01621 1.19729 0.96093 0.92358 0.91690 1.21377 0.90312 1.05065 1.04418 1.30361 1.06590 1.18465 1.21813 1.01035 0.72627 0.74100 0.71571 1.93571 1.60734 1.87791 1.54918 1.93525 1.61974 1.55392 1.86336 1.55262 1.19839 1.91592 1.20352 1.21245 0.94161 1.04863 0.81852 1.20965 0.88382 0.78327 0.84207 1.90637 1.20813 1.52545 1.82626 1.48127 1.13427 1.64187 1.07874 1.22083 0.79722 1.01999 1.03470 1.18814 0.88667 0.94361 0.84560 1.21740 1.25131 0.93734 1.17326 0.92429 1.25872 0.97117 0.98878 0.97412 1.70058 1.35959 1.22285 1.28618 0.85352 0.77887 0.79103 0.78352 1.18844 1.19583 1.21008 1.21060 0.91289 1.00175 0.92831 0.90101 0.90647 0.89630 0.82171 0.82724 0.88800 0.87915 0.91956 0.73675 0.85740 0.85448 0.90697 0.90970 0.88330 0.95543 0.98284 0.92449 0.83490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 10.01 71.24 0.71 -0.26 16 2 C -0.12 -1.64 5.88 -19.86 -0.12 -1.76 16 3 C -0.06 -0.71 9.70 22.27 0.22 -0.49 16 4 C -0.14 -2.09 9.68 22.27 0.22 -1.87 16 5 C 0.00 0.05 5.87 -19.87 -0.12 -0.06 16 6 C -0.16 -3.00 8.61 71.24 0.61 -2.38 16 7 C -0.68 -14.70 5.85 22.27 0.13 -14.56 16 8 S 2.71 71.55 4.94 -56.49 -0.28 71.27 16 9 O -0.98 -30.45 16.49 -128.00 -2.11 -32.56 16 10 O -0.98 -29.29 16.47 -128.00 -2.11 -31.40 16 11 N -1.11 -30.43 4.69 -190.79 -0.90 -31.33 16 12 C 0.11 2.87 5.25 85.64 0.45 3.32 16 13 C 0.49 19.47 7.74 87.66 0.68 20.15 16 14 O -0.59 -28.86 15.32 -3.04 -0.05 -28.91 16 15 N -0.60 -24.32 2.86 -851.13 -2.43 -26.76 16 16 C 0.07 1.86 10.24 127.77 1.31 3.16 16 17 C 0.26 13.53 5.16 85.63 0.44 13.97 16 18 C -0.54 -30.29 9.39 25.60 0.24 -30.05 16 19 H 0.06 3.16 7.81 -2.91 -0.02 3.13 16 20 C 0.01 0.34 5.46 84.66 0.46 0.81 16 21 N -0.93 -55.60 13.29 21.45 0.28 -55.32 16 22 Si 0.97 43.98 29.54 68.60 2.03 46.00 16 23 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 24 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 25 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 26 C -0.03 -0.63 9.21 22.27 0.21 -0.43 16 27 H 0.08 0.56 8.14 -2.39 -0.02 0.55 16 28 H 0.07 0.59 8.09 -2.38 -0.02 0.58 16 29 H 0.08 0.45 8.09 -2.39 -0.02 0.43 16 30 H 0.16 0.93 8.06 -2.91 -0.02 0.91 16 31 H 0.16 1.48 8.06 -2.91 -0.02 1.46 16 32 H 0.09 1.83 8.02 -2.39 -0.02 1.82 16 33 H 0.10 1.50 8.05 -2.39 -0.02 1.48 16 34 H 0.06 1.35 5.46 -2.39 -0.01 1.33 16 35 H 0.43 12.71 7.40 -96.75 -0.72 11.99 16 36 H 0.13 2.44 7.40 -2.39 -0.02 2.43 16 37 H 0.13 2.78 7.72 -2.39 -0.02 2.77 16 38 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.07 2.04 8.07 -2.39 -0.02 2.02 16 40 H 0.10 1.83 6.44 -2.39 -0.02 1.82 16 41 H 0.03 1.41 8.07 -2.39 -0.02 1.39 16 42 H 0.00 -0.06 7.42 -2.39 -0.02 -0.08 16 43 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 44 H 0.15 2.50 7.34 -2.91 -0.02 2.48 16 Total: -1.00 -81.27 379.04 0.19 -81.09 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: 0.31 Total: 18.39 kcal Atomic # 6 Polarization: -15.92 SS G_CDS: 5.44 Total: -10.47 kcal Atomic # 7 Polarization: -110.36 SS G_CDS: -3.04 Total: -113.40 kcal Atomic # 8 Polarization: -88.61 SS G_CDS: -4.27 Total: -92.87 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.00 kcal Atomic # 16 Polarization: 71.55 SS G_CDS: -0.28 Total: 71.27 kcal Total: -81.27 0.19 -81.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573077913.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.097 kcal (2) G-P(sol) polarization free energy of solvation -81.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds