Wall clock time and date at job start Sat Apr 11 2020 05:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 S 1.77235 * 127.33911 * 2 1 4 4 C 1.72208 * 94.84494 * 179.81082 * 3 2 1 5 5 O 1.21830 * 127.05326 * 180.20108 * 4 3 2 6 6 N 1.34234 * 105.88822 * 0.31777 * 4 3 2 7 7 C 1.46503 * 121.38416 * 179.88112 * 6 4 3 8 8 C 1.52996 * 109.46955 * 269.72003 * 7 6 4 9 9 C 1.50703 * 109.47008 * 179.97438 * 8 7 6 10 10 O 1.21284 * 119.99581 * 0.02562 * 9 8 7 11 11 N 1.34780 * 120.00093 * 179.97438 * 9 8 7 12 12 C 1.47423 * 125.64675 * 0.02957 * 11 9 8 13 13 C 1.54913 * 104.83089 * 155.83077 * 12 11 9 14 14 C 1.55160 * 101.57624 * 37.01185 * 13 12 11 15 15 O 1.42897 * 110.72162 * 83.04075 * 14 13 12 16 16 C 1.50702 * 110.71656 * 206.13323 * 14 13 12 17 17 H 1.08002 * 120.00299 * 118.55159 * 16 14 13 18 18 C 1.37884 * 119.99942 * 298.26718 * 16 14 13 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 14 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 14 21 21 H 1.48501 * 109.47188 * 90.00793 * 20 18 16 22 22 H 1.48501 * 109.47085 * 210.00372 * 20 18 16 23 23 H 1.48498 * 109.47634 * 330.00608 * 20 18 16 24 24 C 1.47020 * 125.64834 * 179.97438 * 11 9 8 25 25 C 1.32557 * 127.34300 * 179.97438 * 2 1 3 26 26 C 1.50700 * 121.64465 * 359.97438 * 25 2 1 27 27 H 1.09002 * 109.46784 * 270.00282 * 1 2 3 28 28 H 1.09002 * 109.47082 * 30.00073 * 1 2 3 29 29 H 1.08994 * 109.46566 * 150.00172 * 1 2 3 30 30 H 1.09001 * 109.47178 * 149.71879 * 7 6 4 31 31 H 1.09000 * 109.46971 * 29.72123 * 7 6 4 32 32 H 1.09001 * 109.47279 * 59.99938 * 8 7 6 33 33 H 1.09000 * 109.47379 * 299.99870 * 8 7 6 34 34 H 1.09003 * 110.36676 * 36.99782 * 12 11 9 35 35 H 1.08993 * 110.46098 * 274.71837 * 12 11 9 36 36 H 1.08989 * 111.00550 * 278.93903 * 13 12 11 37 37 H 1.08995 * 111.00094 * 155.08083 * 13 12 11 38 38 H 0.96698 * 114.00670 * 63.83578 * 15 14 13 39 39 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 40 40 H 1.09002 * 109.88085 * 61.67684 * 24 11 9 41 41 H 1.09002 * 109.87937 * 300.51640 * 24 11 9 42 42 H 1.09003 * 109.47171 * 270.01712 * 26 25 2 43 43 H 1.09004 * 109.47308 * 30.01759 * 26 25 2 44 44 H 1.09005 * 109.47504 * 150.01687 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5820 1.4091 0.0000 4 6 4.0345 0.4840 0.0057 5 8 5.1760 0.9097 0.0112 6 7 3.6509 -0.8023 0.0001 7 6 4.6314 -1.8909 0.0001 8 6 4.9727 -2.2698 -1.4424 9 6 5.9817 -3.3891 -1.4424 10 8 6.3875 -3.8397 -0.3921 11 7 6.4325 -3.8901 -2.6097 12 6 6.0253 -3.4387 -3.9527 13 6 7.2042 -3.8320 -4.8776 14 6 7.6406 -5.1894 -4.2657 15 8 6.8235 -6.2526 -4.7594 16 6 9.0951 -5.4602 -4.5522 17 1 9.7960 -5.5637 -3.7370 18 6 9.5302 -5.5818 -5.8549 19 7 8.6768 -5.4558 -6.8476 20 14 11.3317 -5.9252 -6.2097 21 1 11.5553 -7.3924 -6.2603 22 1 11.7026 -5.3227 -7.5154 23 1 12.1694 -5.3335 -5.1358 24 6 7.4124 -4.9765 -2.7544 25 6 2.3111 -1.0539 0.0005 26 6 1.7707 -2.4606 0.0017 27 1 -0.3633 0.0001 1.0277 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3632 -0.8900 -0.5138 30 1 4.2133 -2.7565 0.5139 31 1 5.5358 -1.5652 0.5139 32 1 5.3908 -1.4042 -1.9563 33 1 4.0682 -2.5955 -1.9563 34 1 5.8799 -2.3585 -3.9620 35 1 5.1126 -3.9463 -4.2648 36 1 8.0090 -3.0995 -4.8174 37 1 6.8682 -3.9574 -5.9068 38 1 6.9021 -6.3994 -5.7119 39 1 8.9829 -5.5409 -7.7641 40 1 7.0219 -5.8901 -2.3061 41 1 8.3498 -4.6966 -2.2736 42 1 1.6405 -2.7990 1.0296 43 1 0.8096 -2.4812 -0.5121 44 1 2.4712 -3.1194 -0.5117 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592844826.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:57 Heat of formation + Delta-G solvation = -113.772477 kcal Electronic energy + Delta-G solvation = -27548.497350 eV Core-core repulsion = 23591.688229 eV Total energy + Delta-G solvation = -3956.809121 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.19850 -41.06152 -39.11257 -38.81226 -36.15613 -35.10487 -34.22030 -32.97008 -31.44372 -30.47010 -30.09092 -28.05380 -26.66358 -25.53412 -24.15673 -23.24307 -21.58110 -20.83313 -20.31023 -19.25014 -19.21615 -18.56046 -17.48330 -17.41033 -17.20267 -16.93659 -16.52511 -16.21114 -15.90618 -15.63679 -14.96948 -14.88038 -14.83081 -14.66831 -14.30665 -14.04401 -13.88525 -13.76319 -13.58333 -13.42584 -13.29313 -13.25063 -13.13809 -12.85419 -12.71152 -12.50809 -12.39591 -12.30129 -12.12758 -12.01148 -11.83414 -11.30822 -11.25225 -11.03930 -10.65836 -10.46178 -10.16950 -9.70197 -8.90199 -8.27431 -6.41537 -0.16489 0.32766 0.77430 1.06419 1.39363 1.42759 1.47702 1.50811 1.59863 2.04252 2.37642 2.97914 3.34741 3.56349 3.59976 3.70499 3.85226 3.95309 4.10231 4.18877 4.21683 4.27435 4.35822 4.44491 4.55387 4.56238 4.64765 4.67072 4.70347 4.87109 4.88916 4.92222 5.09113 5.13662 5.14562 5.18595 5.43741 5.44298 5.50718 5.71632 5.73978 6.04372 6.20318 6.49960 6.62154 6.99762 7.28753 7.38204 8.78251 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.022458 B = 0.002378 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.499184 B =11771.134902 C =12006.614277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.195 4.195 3 S -0.001 6.001 4 C 0.460 3.540 5 O -0.522 6.522 6 N -0.527 5.527 7 C 0.124 3.876 8 C -0.136 4.136 9 C 0.527 3.473 10 O -0.586 6.586 11 N -0.609 5.609 12 C 0.103 3.897 13 C -0.127 4.127 14 C 0.236 3.764 15 O -0.590 6.590 16 C -0.564 4.564 17 H 0.049 0.951 18 C 0.039 3.961 19 N -0.903 5.903 20 Si 0.957 3.043 21 H -0.276 1.276 22 H -0.277 1.277 23 H -0.277 1.277 24 C 0.130 3.870 25 C 0.083 3.917 26 C -0.102 4.102 27 H 0.089 0.911 28 H 0.078 0.922 29 H 0.103 0.897 30 H 0.119 0.881 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.129 0.871 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.052 0.948 37 H 0.081 0.919 38 H 0.381 0.619 39 H 0.272 0.728 40 H 0.049 0.951 41 H 0.056 0.944 42 H 0.099 0.901 43 H 0.118 0.882 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.309 9.459 9.021 24.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.314 4.314 3 S 0.243 5.757 4 C 0.144 3.856 5 O -0.406 6.406 6 N -0.246 5.246 7 C -0.002 4.002 8 C -0.176 4.176 9 C 0.316 3.684 10 O -0.468 6.468 11 N -0.341 5.341 12 C -0.019 4.019 13 C -0.166 4.166 14 C 0.196 3.804 15 O -0.399 6.399 16 C -0.603 4.603 17 H 0.068 0.932 18 C -0.163 4.163 19 N -0.542 5.542 20 Si 0.783 3.217 21 H -0.202 1.202 22 H -0.202 1.202 23 H -0.202 1.202 24 C 0.007 3.993 25 C -0.026 4.026 26 C -0.161 4.161 27 H 0.107 0.893 28 H 0.097 0.903 29 H 0.122 0.878 30 H 0.137 0.863 31 H 0.096 0.904 32 H 0.115 0.885 33 H 0.147 0.853 34 H 0.111 0.889 35 H 0.100 0.900 36 H 0.071 0.929 37 H 0.100 0.900 38 H 0.231 0.769 39 H 0.082 0.918 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.117 0.883 43 H 0.136 0.864 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -20.792 10.816 10.069 25.508 hybrid contribution 2.330 -1.460 -0.955 2.911 sum -18.463 9.356 9.113 22.615 Atomic orbital electron populations 1.20322 0.82863 1.04749 1.04168 1.24053 1.00955 0.90098 1.16276 1.85079 0.97482 1.12471 1.80676 1.21975 0.94771 0.85803 0.83039 1.90953 1.21234 1.72977 1.55449 1.46109 1.07294 1.06922 1.64319 1.21469 0.92460 0.89762 0.96466 1.21861 0.99711 0.96965 0.99093 1.20510 0.82395 0.83698 0.81777 1.90671 1.61223 1.63195 1.31663 1.48684 1.42582 1.36048 1.06835 1.22551 0.98523 1.00198 0.80585 1.23085 0.96015 0.98288 0.99214 1.19551 0.88580 0.84752 0.87521 1.86093 1.68325 1.56150 1.29354 1.21731 0.94211 1.51438 0.92873 0.93224 1.25559 1.01695 0.93334 0.95740 1.69734 1.35730 1.49101 0.99661 0.85580 0.80270 0.78374 0.77522 1.20182 1.20187 1.20222 1.21782 0.91071 0.88984 0.97496 1.19826 0.80712 0.99986 1.02035 1.20971 1.03111 0.86755 1.05225 0.89275 0.90318 0.87824 0.86283 0.90420 0.88482 0.85314 0.88944 0.90027 0.92885 0.90019 0.76929 0.91837 0.93212 0.92534 0.88289 0.86388 0.90809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.32 10.10 71.24 0.72 0.40 16 2 C -0.19 -2.54 6.72 24.54 0.16 -2.38 16 3 S 0.00 -0.02 22.97 -56.49 -1.30 -1.32 16 4 C 0.46 12.47 8.27 129.88 1.07 13.54 16 5 O -0.52 -18.49 17.55 -4.76 -0.08 -18.57 16 6 N -0.53 -11.34 2.60 -643.44 -1.68 -13.01 16 7 C 0.12 2.91 4.27 86.38 0.37 3.28 16 8 C -0.14 -3.29 4.93 29.85 0.15 -3.14 16 9 C 0.53 18.00 7.85 87.66 0.69 18.69 16 10 O -0.59 -23.85 16.31 -3.04 -0.05 -23.90 16 11 N -0.61 -22.65 3.33 -811.80 -2.70 -25.35 16 12 C 0.10 3.38 6.68 86.86 0.58 3.96 16 13 C -0.13 -5.31 5.48 31.99 0.18 -5.13 16 14 C 0.24 11.21 0.85 -10.35 -0.01 11.20 16 15 O -0.59 -28.78 13.09 -148.98 -1.95 -30.73 16 16 C -0.56 -29.66 8.21 25.60 0.21 -29.45 16 17 H 0.05 2.68 7.57 -2.91 -0.02 2.65 16 18 C 0.04 1.95 5.27 84.66 0.45 2.40 16 19 N -0.90 -45.24 10.66 21.45 0.23 -45.01 16 20 Si 0.96 41.25 29.54 68.60 2.03 43.28 16 21 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 22 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 23 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 24 C 0.13 5.80 6.22 86.73 0.54 6.34 16 25 C 0.08 1.21 6.59 40.71 0.27 1.48 16 26 C -0.10 -0.79 9.07 71.24 0.65 -0.15 16 27 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 28 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.10 0.11 6.77 -2.39 -0.02 0.09 16 30 H 0.12 2.38 6.79 -2.39 -0.02 2.37 16 31 H 0.08 2.27 7.75 -2.39 -0.02 2.25 16 32 H 0.10 2.45 7.85 -2.39 -0.02 2.43 16 33 H 0.13 2.32 7.52 -2.39 -0.02 2.30 16 34 H 0.09 2.46 7.48 -2.39 -0.02 2.45 16 35 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.05 2.33 8.04 -2.39 -0.02 2.31 16 37 H 0.08 3.52 7.55 -2.39 -0.02 3.50 16 38 H 0.38 18.63 7.41 -74.06 -0.55 18.08 16 39 H 0.27 12.98 8.31 -92.70 -0.77 12.20 16 40 H 0.05 2.30 8.07 -2.39 -0.02 2.28 16 41 H 0.06 2.67 7.66 -2.39 -0.02 2.66 16 42 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.12 0.30 6.69 -2.38 -0.02 0.29 16 44 H 0.07 0.70 6.23 -2.38 -0.01 0.69 16 Total: -1.00 -67.72 372.11 1.01 -66.71 By element: Atomic # 1 Polarization: 26.37 SS G_CDS: 0.49 Total: 26.86 kcal Atomic # 6 Polarization: 15.02 SS G_CDS: 6.02 Total: 21.04 kcal Atomic # 7 Polarization: -79.22 SS G_CDS: -4.15 Total: -83.37 kcal Atomic # 8 Polarization: -71.12 SS G_CDS: -2.08 Total: -73.20 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.28 kcal Atomic # 16 Polarization: -0.02 SS G_CDS: -1.30 Total: -1.32 kcal Total: -67.72 1.01 -66.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592844826.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.063 kcal (2) G-P(sol) polarization free energy of solvation -67.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds