Wall clock time and date at job start Sat Apr 11 2020 05:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 113.99914 * 2 1 4 4 C 1.53003 * 109.47377 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46832 * 64.99887 * 4 3 2 6 6 C 1.36889 * 120.00115 * 263.52058 * 5 4 3 7 7 H 1.07996 * 120.00180 * 135.54941 * 6 5 4 8 8 C 1.39008 * 120.00066 * 315.55011 * 6 5 4 9 9 N 1.31397 * 120.00091 * 351.99237 * 8 6 5 10 10 Si 1.86804 * 119.99920 * 171.99745 * 8 6 5 11 11 H 1.48494 * 109.47268 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.46807 * 119.99900 * 10 8 6 13 13 H 1.48502 * 109.46784 * 239.99717 * 10 8 6 14 14 C 1.34771 * 119.99897 * 83.52307 * 5 4 3 15 15 O 1.21730 * 120.00022 * 354.46295 * 14 5 4 16 16 C 1.46566 * 120.00073 * 174.18769 * 14 5 4 17 17 S 1.76211 * 126.17952 * 352.58448 * 16 14 5 18 18 C 1.70921 * 90.37692 * 179.97438 * 17 16 14 19 19 C 1.50698 * 124.70294 * 180.11125 * 18 17 16 20 20 H 1.08994 * 110.80802 * 3.89316 * 19 18 17 21 21 C 1.54822 * 110.90238 * 240.26571 * 19 18 17 22 22 C 1.54101 * 104.18482 * 220.92139 * 21 19 18 23 23 O 1.43739 * 107.29544 * 357.97021 * 22 21 19 24 24 C 1.44384 * 106.97444 * 26.51399 * 23 22 21 25 25 N 1.29376 * 110.59139 * 0.32083 * 18 17 16 26 26 C 1.30941 * 117.47054 * 359.74521 * 25 18 17 27 27 C 1.50700 * 123.03941 * 179.97438 * 26 25 18 28 28 H 1.09006 * 109.46798 * 60.00057 * 1 2 3 29 29 H 1.08998 * 109.46636 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47074 * 299.99939 * 1 2 3 31 31 H 1.09006 * 109.47251 * 60.00132 * 3 2 1 32 32 H 1.09002 * 109.47305 * 299.99763 * 3 2 1 33 33 H 1.09005 * 109.46892 * 305.00679 * 4 3 2 34 34 H 1.08998 * 109.47535 * 185.00008 * 4 3 2 35 35 H 0.96999 * 120.00007 * 180.02562 * 9 8 6 36 36 H 1.08998 * 110.48835 * 339.59522 * 21 19 18 37 37 H 1.09000 * 110.48549 * 102.24617 * 21 19 18 38 38 H 1.08997 * 109.87334 * 117.39678 * 22 21 19 39 39 H 1.09003 * 109.87599 * 238.54330 * 22 21 19 40 40 H 1.09001 * 110.61487 * 201.43392 * 24 23 22 41 41 H 1.09004 * 110.61725 * 78.44331 * 24 23 22 42 42 H 1.09000 * 109.47450 * 270.00173 * 27 26 25 43 43 H 1.08999 * 109.47257 * 30.00238 * 27 26 25 44 44 H 1.09005 * 109.46686 * 150.00605 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.2256 -0.7812 -1.2972 7 1 3.8617 -1.3695 -2.1266 8 6 4.9466 -1.3902 -0.2766 9 7 5.5231 -0.6567 0.6486 10 14 5.0962 -3.2514 -0.2207 11 1 4.3615 -3.8418 -1.3681 12 1 6.5286 -3.6354 -0.2990 13 1 4.5170 -3.7565 1.0501 14 6 4.1375 1.3175 -2.3567 15 8 3.8207 2.4928 -2.3437 16 6 4.6996 0.7234 -3.5729 17 16 5.3852 -0.8931 -3.7199 18 6 5.7146 -0.6153 -5.3740 19 6 6.3582 -1.6146 -6.3003 20 1 6.5236 -2.5640 -5.7910 21 6 7.6830 -1.0592 -6.8776 22 6 7.6633 -1.4956 -8.3554 23 8 6.4654 -2.2636 -8.5582 24 6 5.5050 -1.8131 -7.5788 25 7 5.3386 0.5735 -5.7193 26 6 4.7925 1.3260 -4.7973 27 6 4.3106 2.7293 -5.0612 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8508 0.5685 0.8427 34 1 3.9785 2.1766 0.0902 35 1 6.0266 -1.0816 1.3606 36 1 7.7065 0.0279 -6.8010 37 1 8.5374 -1.4975 -6.3617 38 1 7.6544 -0.6174 -9.0009 39 1 8.5380 -2.1087 -8.5724 40 1 4.7391 -2.5714 -7.4153 41 1 5.0534 -0.8708 -7.8892 42 1 5.1215 3.4332 -4.8741 43 1 3.9884 2.8137 -6.0991 44 1 3.4732 2.9559 -4.4012 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601626847.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:08 Heat of formation + Delta-G solvation = -99.063129 kcal Electronic energy + Delta-G solvation = -28240.783701 eV Core-core repulsion = 24284.612424 eV Total energy + Delta-G solvation = -3956.171276 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.19984 -40.52613 -39.64693 -38.48826 -36.70764 -34.37851 -33.67287 -31.91253 -31.24136 -30.13098 -28.82239 -27.37477 -26.60841 -25.73479 -24.14120 -23.44214 -22.14011 -21.66817 -20.46874 -18.96697 -18.39684 -17.79955 -17.33924 -17.24733 -16.96127 -16.70694 -16.30504 -16.15190 -15.99940 -15.73241 -15.63004 -15.03085 -14.78970 -14.69505 -14.30328 -14.01999 -13.65510 -13.61246 -13.42125 -13.39109 -13.04021 -13.00535 -12.85969 -12.65405 -12.55317 -12.40002 -12.24901 -12.07775 -11.98763 -11.85217 -11.76448 -11.23567 -10.70524 -10.62690 -10.48182 -10.26161 -10.09774 -9.64882 -9.25320 -8.38640 -6.22688 -0.48178 0.59297 1.07365 1.41762 1.46868 1.57902 1.64222 2.23168 2.43030 2.77818 2.87255 2.97284 3.13343 3.27257 3.64404 3.80015 3.94866 4.18605 4.20617 4.25658 4.27340 4.29509 4.37908 4.49445 4.52851 4.59382 4.61055 4.72037 4.76453 4.77833 4.79383 4.86031 4.87454 4.94483 4.97427 5.01953 5.12898 5.25922 5.39208 5.50414 5.83940 5.90945 6.29779 6.38014 6.85734 6.99003 7.43611 7.86308 8.61857 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012545 B = 0.004259 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.490247 B = 6572.870009 C = 7739.287050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.397 6.397 3 C 0.062 3.938 4 C 0.122 3.878 5 N -0.431 5.431 6 C -0.330 4.330 7 H 0.095 0.905 8 C 0.029 3.971 9 N -0.876 5.876 10 Si 0.957 3.043 11 H -0.247 1.247 12 H -0.266 1.266 13 H -0.274 1.274 14 C 0.528 3.472 15 O -0.614 6.614 16 C -0.293 4.293 17 S 0.265 5.735 18 C -0.015 4.015 19 C -0.044 4.044 20 H 0.119 0.881 21 C -0.139 4.139 22 C 0.050 3.950 23 O -0.391 6.391 24 C 0.067 3.933 25 N -0.490 5.490 26 C 0.102 3.898 27 C -0.066 4.066 28 H 0.036 0.964 29 H 0.095 0.905 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.031 0.969 33 H 0.102 0.898 34 H 0.059 0.941 35 H 0.279 0.721 36 H 0.069 0.931 37 H 0.098 0.902 38 H 0.062 0.938 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.061 0.939 42 H 0.072 0.928 43 H 0.082 0.918 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.165 -4.305 -7.728 8.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.316 6.316 3 C -0.016 4.016 4 C -0.002 4.002 5 N -0.148 5.148 6 C -0.463 4.463 7 H 0.112 0.888 8 C -0.178 4.178 9 N -0.511 5.511 10 Si 0.778 3.222 11 H -0.170 1.170 12 H -0.191 1.191 13 H -0.199 1.199 14 C 0.319 3.681 15 O -0.503 6.503 16 C -0.417 4.417 17 S 0.531 5.469 18 C -0.287 4.287 19 C -0.066 4.066 20 H 0.137 0.863 21 C -0.179 4.179 22 C -0.026 4.026 23 O -0.310 6.310 24 C -0.012 4.012 25 N -0.205 5.205 26 C -0.038 4.038 27 C -0.125 4.125 28 H 0.054 0.946 29 H 0.113 0.887 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.049 0.951 33 H 0.119 0.881 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.117 0.883 38 H 0.081 0.919 39 H 0.125 0.875 40 H 0.125 0.875 41 H 0.079 0.921 42 H 0.091 0.909 43 H 0.100 0.900 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.498 -4.851 -7.557 8.994 hybrid contribution -0.458 0.963 0.595 1.221 sum 0.041 -3.888 -6.962 7.975 Atomic orbital electron populations 1.22878 0.80620 1.03380 1.00160 1.88036 1.20463 1.27817 1.95326 1.22835 0.94553 0.84631 0.99578 1.21446 0.91251 0.97854 0.89645 1.43333 1.56112 1.07619 1.07708 1.19494 1.34040 0.82934 1.09869 0.88791 1.26182 0.92778 1.03912 0.94920 1.69858 1.29710 1.37954 1.13583 0.85389 0.79120 0.77886 0.79768 1.17020 1.19073 1.19938 1.17494 0.81590 0.85231 0.83825 1.90580 1.57981 1.16866 1.84917 1.25725 1.15660 1.00732 0.99577 1.84811 1.49642 1.10737 1.01693 1.28144 1.02119 0.96190 1.02284 1.21453 0.95401 0.95504 0.94267 0.86313 1.23005 0.96622 1.01969 0.96290 1.23279 0.88484 0.96186 0.94695 1.88832 1.24644 1.61504 1.56030 1.23539 0.91945 1.00655 0.85036 1.65931 1.14506 1.04544 1.35539 1.20977 0.97548 0.98578 0.86743 1.20326 1.01546 0.88205 1.02405 0.94582 0.88666 0.92879 0.91365 0.95062 0.88055 0.92302 0.91091 0.91238 0.88301 0.91931 0.87464 0.87502 0.92114 0.90938 0.89960 0.90783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 11.01 113.37 1.25 2.01 16 2 O -0.40 -16.15 10.49 -148.98 -1.56 -17.71 16 3 C 0.06 2.49 6.22 71.98 0.45 2.94 16 4 C 0.12 5.69 5.17 86.38 0.45 6.14 16 5 N -0.43 -21.44 2.45 -640.16 -1.57 -23.01 16 6 C -0.33 -15.88 6.54 84.09 0.55 -15.34 16 7 H 0.10 4.47 5.88 -9.68 -0.06 4.41 16 8 C 0.03 1.37 5.16 84.94 0.44 1.81 16 9 N -0.88 -43.34 11.27 21.67 0.24 -43.10 16 10 Si 0.96 36.51 29.56 68.60 2.03 38.53 16 11 H -0.25 -8.89 7.11 99.48 0.71 -8.18 16 12 H -0.27 -9.75 7.11 99.48 0.71 -9.04 16 13 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 14 C 0.53 26.54 7.51 86.42 0.65 27.19 16 15 O -0.61 -32.12 13.94 -4.44 -0.06 -32.18 16 16 C -0.29 -13.14 6.30 24.10 0.15 -12.99 16 17 S 0.27 10.13 18.79 -56.49 -1.06 9.06 16 18 C -0.01 -0.49 6.00 88.47 0.53 0.04 16 19 C -0.04 -1.13 3.61 -10.24 -0.04 -1.17 16 20 H 0.12 2.61 8.14 -2.39 -0.02 2.59 16 21 C -0.14 -3.07 6.59 31.59 0.21 -2.86 16 22 C 0.05 0.99 7.70 72.35 0.56 1.55 16 23 O -0.39 -9.62 11.52 -148.98 -1.72 -11.34 16 24 C 0.07 1.64 7.16 72.66 0.52 2.16 16 25 N -0.49 -18.07 10.01 -177.54 -1.78 -19.85 16 26 C 0.10 4.15 6.83 42.35 0.29 4.44 16 27 C -0.07 -2.41 9.63 71.24 0.69 -1.72 16 28 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 29 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 30 H 0.05 1.31 8.14 -2.39 -0.02 1.30 16 31 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 32 H 0.03 1.33 7.89 -2.39 -0.02 1.31 16 33 H 0.10 5.03 5.66 -2.38 -0.01 5.01 16 34 H 0.06 2.81 7.71 -2.39 -0.02 2.79 16 35 H 0.28 12.90 8.31 -92.71 -0.77 12.13 16 36 H 0.07 1.77 7.74 -2.39 -0.02 1.75 16 37 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.06 1.19 8.14 -2.39 -0.02 1.18 16 39 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 41 H 0.06 1.67 7.77 -2.39 -0.02 1.65 16 42 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 43 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 44 H 0.07 2.98 6.25 -2.38 -0.01 2.97 16 Total: -1.00 -61.02 371.54 2.19 -58.83 By element: Atomic # 1 Polarization: 25.59 SS G_CDS: 0.98 Total: 26.56 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: 6.69 Total: 14.20 kcal Atomic # 7 Polarization: -82.85 SS G_CDS: -3.10 Total: -85.96 kcal Atomic # 8 Polarization: -57.89 SS G_CDS: -3.34 Total: -61.23 kcal Atomic # 14 Polarization: 36.51 SS G_CDS: 2.03 Total: 38.53 kcal Atomic # 16 Polarization: 10.13 SS G_CDS: -1.06 Total: 9.06 kcal Total: -61.02 2.19 -58.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601626847.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.234 kcal (2) G-P(sol) polarization free energy of solvation -61.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds