Wall clock time and date at job start Sat Apr 11 2020 05:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21281 * 120.00098 * 2 1 4 4 N 1.34778 * 119.99694 * 180.02562 * 2 1 3 5 5 C 1.39921 * 120.00144 * 185.12315 * 4 2 1 6 6 C 1.38891 * 120.06867 * 34.46444 * 5 4 2 7 7 C 1.38094 * 119.92590 * 179.97438 * 6 5 4 8 8 C 1.38297 * 120.07352 * 0.03125 * 7 6 5 9 9 C 1.50701 * 119.93104 * 179.97438 * 8 7 6 10 10 C 1.38264 * 120.14156 * 0.22261 * 8 7 6 11 11 S 1.76201 * 119.96533 * 179.74763 * 10 8 7 12 12 O 1.42099 * 106.40139 * 176.12101 * 11 10 8 13 13 O 1.42096 * 106.40340 * 309.04151 * 11 10 8 14 14 N 1.65605 * 107.21797 * 62.57900 * 11 10 8 15 15 C 1.46499 * 119.99599 * 61.81973 * 14 11 10 16 16 C 1.53004 * 109.46857 * 162.64609 * 15 14 11 17 17 C 1.52996 * 109.47097 * 179.97438 * 16 15 14 18 18 C 1.50703 * 109.47369 * 179.97438 * 17 16 15 19 19 H 1.08002 * 119.99616 * 0.02562 * 18 17 16 20 20 C 1.37869 * 120.00338 * 180.02562 * 18 17 16 21 21 N 1.31518 * 120.00107 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00173 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47068 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47093 * 120.00029 * 22 20 18 25 25 H 1.48505 * 109.46947 * 239.99996 * 22 20 18 26 26 C 1.38128 * 120.06719 * 359.49515 * 10 8 7 27 27 H 1.09001 * 109.46545 * 239.99870 * 1 2 3 28 28 H 1.09005 * 109.46556 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.47451 * 119.99476 * 1 2 3 30 30 H 0.97009 * 120.00265 * 5.12346 * 4 2 1 31 31 H 1.08000 * 120.03632 * 359.96437 * 6 5 4 32 32 H 1.08002 * 119.96225 * 179.97438 * 7 6 5 33 33 H 1.09009 * 109.46884 * 85.61999 * 9 8 7 34 34 H 1.09001 * 109.47544 * 325.62495 * 9 8 7 35 35 H 1.08992 * 109.47375 * 205.61887 * 9 8 7 36 36 H 0.97000 * 120.00032 * 241.81912 * 14 11 10 37 37 H 1.09007 * 109.47092 * 282.64157 * 15 14 11 38 38 H 1.08997 * 109.47037 * 42.64561 * 15 14 11 39 39 H 1.08997 * 109.46866 * 300.00223 * 16 15 14 40 40 H 1.08998 * 109.46822 * 60.00221 * 16 15 14 41 41 H 1.08997 * 109.47641 * 299.99990 * 17 16 15 42 42 H 1.09000 * 109.47387 * 60.00304 * 17 16 15 43 43 H 0.97001 * 120.00058 * 179.97438 * 21 20 18 44 44 H 1.08001 * 120.03168 * 180.24429 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.5758 -1.1698 0.1077 6 6 4.2154 -0.2118 0.8837 7 6 5.5923 -0.2174 0.9888 8 6 6.3344 -1.1752 0.3220 9 6 7.8369 -1.1779 0.4385 10 6 5.7011 -2.1271 -0.4555 11 16 6.6515 -3.3411 -1.3084 12 8 5.7201 -4.2140 -1.9327 13 8 7.6552 -2.6347 -2.0244 14 7 7.4398 -4.2403 -0.1627 15 6 6.6726 -5.0133 0.8172 16 6 7.5795 -6.0644 1.4604 17 6 6.7785 -6.8712 2.4842 18 6 7.6715 -7.9069 3.1174 19 1 8.7070 -7.9818 2.8197 20 6 7.1667 -8.7588 4.0768 21 7 5.9059 -8.6673 4.4397 22 14 8.2739 -10.0422 4.8621 23 1 9.6385 -9.9382 4.2856 24 1 8.3373 -9.8111 6.3277 25 1 7.7261 -11.3970 4.5978 26 6 4.3238 -2.1304 -0.5601 27 1 -0.3632 -0.5139 0.8900 28 1 -0.3632 1.0277 0.0005 29 1 -0.3634 -0.5137 -0.8900 30 1 1.6987 -2.0057 -0.0759 31 1 3.6365 0.5368 1.4041 32 1 6.0903 0.5276 1.5917 33 1 8.1312 -1.7335 1.3291 34 1 8.1974 -0.1521 0.5147 35 1 8.2689 -1.6503 -0.4436 36 1 8.4094 -4.2552 -0.1405 37 1 6.2886 -4.3443 1.5874 38 1 5.8399 -5.5084 0.3178 39 1 7.9635 -6.7332 0.6902 40 1 8.4122 -5.5691 1.9598 41 1 6.3947 -6.2022 3.2544 42 1 5.9455 -7.3665 1.9853 43 1 5.5507 -9.2669 5.1144 44 1 3.8294 -2.8767 -1.1644 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609146678.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:17 Heat of formation + Delta-G solvation = -98.743822 kcal Electronic energy + Delta-G solvation = -27123.815155 eV Core-core repulsion = 23167.657725 eV Total energy + Delta-G solvation = -3956.157430 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.87775 -39.00134 -37.33537 -36.08000 -35.86241 -35.40956 -33.28616 -32.28050 -31.52966 -30.88794 -30.04867 -26.53416 -26.36439 -23.82376 -23.03881 -22.20058 -21.19102 -20.56772 -19.35698 -18.45434 -17.53118 -17.31341 -16.61583 -16.31656 -15.98965 -15.86071 -15.62564 -14.97658 -14.65995 -14.50414 -14.42915 -14.33574 -14.03649 -13.90087 -13.12623 -13.02254 -12.78276 -12.58969 -12.47520 -12.38293 -12.37609 -12.19392 -12.01804 -11.87604 -11.72995 -11.51189 -11.00048 -10.92801 -10.78053 -10.66080 -10.55107 -10.26270 -9.95596 -9.53009 -9.48330 -9.28503 -9.10849 -8.40299 -8.39972 -6.05325 -4.07704 0.35699 0.65884 0.93399 2.14135 2.65050 2.98311 3.28062 3.29783 3.35956 3.39781 3.71301 4.25622 4.34702 4.42110 4.55960 4.61211 4.77505 4.79899 4.88712 5.02361 5.11970 5.31052 5.32492 5.34718 5.38431 5.43494 5.47534 5.64436 5.67933 5.79275 5.90093 5.95101 6.05213 6.10343 6.13882 6.54442 6.62331 6.73879 6.93040 6.94646 7.12204 7.60138 7.66976 7.72485 7.93776 8.35617 8.99172 9.56825 11.06017 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011556 B = 0.002775 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.313633 B =10087.663878 C =11385.469372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.511 3.489 3 O -0.529 6.529 4 N -0.674 5.674 5 C 0.116 3.884 6 C -0.061 4.061 7 C -0.124 4.124 8 C 0.012 3.988 9 C -0.166 4.166 10 C -0.658 4.658 11 S 2.698 3.302 12 O -0.959 6.959 13 O -0.963 6.963 14 N -1.112 6.112 15 C 0.115 3.885 16 C -0.115 4.115 17 C 0.021 3.979 18 C -0.520 4.520 19 H 0.056 0.944 20 C 0.056 3.944 21 N -0.895 5.895 22 Si 0.892 3.108 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 C -0.042 4.042 27 H 0.094 0.906 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.415 0.585 31 H 0.139 0.861 32 H 0.135 0.865 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.418 0.582 37 H 0.061 0.939 38 H 0.076 0.924 39 H 0.058 0.942 40 H 0.056 0.944 41 H 0.018 0.982 42 H 0.019 0.981 43 H 0.260 0.740 44 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.225 17.837 -8.615 21.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.299 3.701 3 O -0.405 6.405 4 N -0.320 5.320 5 C 0.022 3.978 6 C -0.081 4.081 7 C -0.143 4.143 8 C 0.010 3.990 9 C -0.222 4.222 10 C -0.745 4.745 11 S 2.787 3.213 12 O -0.949 6.949 13 O -0.953 6.953 14 N -0.874 5.874 15 C -0.011 4.011 16 C -0.155 4.155 17 C -0.017 4.017 18 C -0.559 4.559 19 H 0.075 0.925 20 C -0.145 4.145 21 N -0.534 5.534 22 Si 0.720 3.280 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.063 4.063 27 H 0.112 0.888 28 H 0.115 0.885 29 H 0.111 0.889 30 H 0.252 0.748 31 H 0.157 0.843 32 H 0.153 0.847 33 H 0.109 0.891 34 H 0.102 0.898 35 H 0.113 0.887 36 H 0.253 0.747 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.037 0.963 42 H 0.038 0.962 43 H 0.070 0.930 44 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -7.176 18.445 -9.392 21.907 hybrid contribution 0.224 -0.769 1.221 1.461 sum -6.952 17.676 -8.171 20.677 Atomic orbital electron populations 1.21934 0.90375 1.06082 1.04868 1.21073 0.91052 0.82995 0.74946 1.90748 1.70688 1.31233 1.47814 1.43607 1.04970 1.10279 1.73179 1.17682 0.82998 0.98471 0.98659 1.21375 0.94916 0.97161 0.94683 1.21061 0.93302 0.99304 1.00680 1.19544 0.96172 0.91691 0.91598 1.21537 0.90330 1.05189 1.05174 1.30640 1.06464 1.19063 1.18288 1.01758 0.73410 0.73185 0.72910 1.93567 1.64361 1.64084 1.72890 1.93545 1.58037 1.73802 1.69893 1.55451 1.18314 1.62373 1.51231 1.21592 0.95214 0.94009 0.90243 1.21851 0.98305 0.96016 0.99298 1.19078 0.95368 0.94360 0.92864 1.21251 0.96791 1.16488 1.21345 0.92541 1.25021 0.95048 0.97593 0.96813 1.69968 1.13294 1.38498 1.31655 0.86535 0.80865 0.81484 0.79090 1.19737 1.21047 1.20996 1.20642 0.91828 0.98104 0.95734 0.88758 0.88500 0.88896 0.74797 0.84297 0.84672 0.89110 0.89779 0.88659 0.74690 0.92105 0.90578 0.92317 0.92537 0.96348 0.96214 0.93023 0.83516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.76 10.32 36.01 0.37 -0.39 16 2 C 0.51 4.58 7.67 -10.98 -0.08 4.50 16 3 O -0.53 -6.93 14.85 5.56 0.08 -6.85 16 4 N -0.67 -5.76 5.34 -9.86 -0.05 -5.81 16 5 C 0.12 1.34 6.26 -83.69 -0.52 0.82 16 6 C -0.06 -0.72 8.65 -39.39 -0.34 -1.06 16 7 C -0.12 -1.38 9.71 -39.61 -0.38 -1.77 16 8 C 0.01 0.14 5.88 -104.59 -0.61 -0.47 16 9 C -0.17 -1.67 9.34 36.01 0.34 -1.33 16 10 C -0.66 -8.43 5.81 -39.61 -0.23 -8.66 16 11 S 2.70 36.83 4.94 -107.50 -0.53 36.30 16 12 O -0.96 -15.51 16.52 -57.17 -0.94 -16.46 16 13 O -0.96 -14.48 15.58 -57.17 -0.89 -15.38 16 14 N -1.11 -14.24 5.66 -10.61 -0.06 -14.30 16 15 C 0.11 1.74 6.19 -4.04 -0.03 1.72 16 16 C -0.12 -2.13 5.30 -26.73 -0.14 -2.28 16 17 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 18 C -0.52 -14.15 9.11 -34.44 -0.31 -14.47 16 19 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 20 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 21 N -0.89 -26.11 13.29 55.43 0.74 -25.37 16 22 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 23 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 26 C -0.04 -0.50 9.47 -39.39 -0.37 -0.88 16 27 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.10 0.44 8.12 -51.93 -0.42 0.02 16 29 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.42 2.22 8.82 -40.82 -0.36 1.86 16 31 H 0.14 1.61 6.50 -52.49 -0.34 1.27 16 32 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 33 H 0.09 0.81 8.14 -51.92 -0.42 0.38 16 34 H 0.08 0.69 8.11 -51.93 -0.42 0.27 16 35 H 0.09 1.04 4.80 -51.93 -0.25 0.79 16 36 H 0.42 4.53 8.67 -34.47 -0.30 4.23 16 37 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16 38 H 0.08 1.19 7.79 -51.93 -0.40 0.79 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 44 H 0.15 1.58 7.34 -52.49 -0.39 1.19 16 LS Contribution 380.58 15.07 5.74 5.74 Total: -1.00 -36.28 380.58 -9.73 -46.01 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -6.23 Total: 2.42 kcal Atomic # 6 Polarization: -19.86 SS G_CDS: -2.56 Total: -22.42 kcal Atomic # 7 Polarization: -46.10 SS G_CDS: 0.62 Total: -45.48 kcal Atomic # 8 Polarization: -36.93 SS G_CDS: -1.75 Total: -38.68 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 36.83 SS G_CDS: -0.53 Total: 36.30 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.28 -9.73 -46.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609146678.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.731 kcal (2) G-P(sol) polarization free energy of solvation -36.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds