Wall clock time and date at job start Sat Apr 11 2020 05:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21281 * 120.00098 * 2 1 4 4 N 1.34778 * 119.99694 * 180.02562 * 2 1 3 5 5 C 1.39921 * 120.00144 * 185.12315 * 4 2 1 6 6 C 1.38891 * 120.06867 * 34.46444 * 5 4 2 7 7 C 1.38094 * 119.92590 * 179.97438 * 6 5 4 8 8 C 1.38297 * 120.07352 * 0.03125 * 7 6 5 9 9 C 1.50701 * 119.93104 * 179.97438 * 8 7 6 10 10 C 1.38264 * 120.14156 * 0.22261 * 8 7 6 11 11 S 1.76201 * 119.96533 * 179.74763 * 10 8 7 12 12 O 1.42099 * 106.40139 * 176.12101 * 11 10 8 13 13 O 1.42096 * 106.40340 * 309.04151 * 11 10 8 14 14 N 1.65605 * 107.21797 * 62.57900 * 11 10 8 15 15 C 1.46499 * 119.99599 * 61.81973 * 14 11 10 16 16 C 1.53004 * 109.46857 * 162.64609 * 15 14 11 17 17 C 1.52996 * 109.47097 * 179.97438 * 16 15 14 18 18 C 1.50703 * 109.47369 * 179.97438 * 17 16 15 19 19 H 1.08002 * 119.99616 * 0.02562 * 18 17 16 20 20 C 1.37869 * 120.00338 * 180.02562 * 18 17 16 21 21 N 1.31518 * 120.00107 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00173 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47068 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47093 * 120.00029 * 22 20 18 25 25 H 1.48505 * 109.46947 * 239.99996 * 22 20 18 26 26 C 1.38128 * 120.06719 * 359.49515 * 10 8 7 27 27 H 1.09001 * 109.46545 * 239.99870 * 1 2 3 28 28 H 1.09005 * 109.46556 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.47451 * 119.99476 * 1 2 3 30 30 H 0.97009 * 120.00265 * 5.12346 * 4 2 1 31 31 H 1.08000 * 120.03632 * 359.96437 * 6 5 4 32 32 H 1.08002 * 119.96225 * 179.97438 * 7 6 5 33 33 H 1.09009 * 109.46884 * 85.61999 * 9 8 7 34 34 H 1.09001 * 109.47544 * 325.62495 * 9 8 7 35 35 H 1.08992 * 109.47375 * 205.61887 * 9 8 7 36 36 H 0.97000 * 120.00032 * 241.81912 * 14 11 10 37 37 H 1.09007 * 109.47092 * 282.64157 * 15 14 11 38 38 H 1.08997 * 109.47037 * 42.64561 * 15 14 11 39 39 H 1.08997 * 109.46866 * 300.00223 * 16 15 14 40 40 H 1.08998 * 109.46822 * 60.00221 * 16 15 14 41 41 H 1.08997 * 109.47641 * 299.99990 * 17 16 15 42 42 H 1.09000 * 109.47387 * 60.00304 * 17 16 15 43 43 H 0.97001 * 120.00058 * 179.97438 * 21 20 18 44 44 H 1.08001 * 120.03168 * 180.24429 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.5758 -1.1698 0.1077 6 6 4.2154 -0.2118 0.8837 7 6 5.5923 -0.2174 0.9888 8 6 6.3344 -1.1752 0.3220 9 6 7.8369 -1.1779 0.4385 10 6 5.7011 -2.1271 -0.4555 11 16 6.6515 -3.3411 -1.3084 12 8 5.7201 -4.2140 -1.9327 13 8 7.6552 -2.6347 -2.0244 14 7 7.4398 -4.2403 -0.1627 15 6 6.6726 -5.0133 0.8172 16 6 7.5795 -6.0644 1.4604 17 6 6.7785 -6.8712 2.4842 18 6 7.6715 -7.9069 3.1174 19 1 8.7070 -7.9818 2.8197 20 6 7.1667 -8.7588 4.0768 21 7 5.9059 -8.6673 4.4397 22 14 8.2739 -10.0422 4.8621 23 1 9.6385 -9.9382 4.2856 24 1 8.3373 -9.8111 6.3277 25 1 7.7261 -11.3970 4.5978 26 6 4.3238 -2.1304 -0.5601 27 1 -0.3632 -0.5139 0.8900 28 1 -0.3632 1.0277 0.0005 29 1 -0.3634 -0.5137 -0.8900 30 1 1.6987 -2.0057 -0.0759 31 1 3.6365 0.5368 1.4041 32 1 6.0903 0.5276 1.5917 33 1 8.1312 -1.7335 1.3291 34 1 8.1974 -0.1521 0.5147 35 1 8.2689 -1.6503 -0.4436 36 1 8.4094 -4.2552 -0.1405 37 1 6.2886 -4.3443 1.5874 38 1 5.8399 -5.5084 0.3178 39 1 7.9635 -6.7332 0.6902 40 1 8.4122 -5.5691 1.9598 41 1 6.3947 -6.2022 3.2544 42 1 5.9455 -7.3665 1.9853 43 1 5.5507 -9.2669 5.1144 44 1 3.8294 -2.8767 -1.1644 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609146678.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:16 Heat of formation + Delta-G solvation = -125.169882 kcal Electronic energy + Delta-G solvation = -27124.961075 eV Core-core repulsion = 23167.657725 eV Total energy + Delta-G solvation = -3957.303350 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.66446 -39.83557 -38.49859 -37.41807 -37.04647 -36.24518 -35.15708 -33.09532 -32.57585 -32.42926 -30.58548 -28.19059 -27.24644 -24.77199 -24.71396 -23.01804 -22.26620 -21.88539 -20.42874 -19.37716 -18.56395 -18.39227 -18.27624 -17.32790 -17.05119 -16.72284 -16.60059 -16.43168 -16.03105 -15.85247 -15.51719 -15.15410 -14.92747 -14.69206 -14.30803 -14.10841 -13.79550 -13.70023 -13.56702 -13.48304 -13.32483 -13.27620 -13.18413 -13.03343 -12.80996 -12.73366 -12.72431 -12.50719 -12.25688 -11.91730 -11.65024 -11.47816 -11.36524 -11.11624 -11.07034 -10.52019 -10.47115 -10.37177 -9.23925 -8.16735 -6.26257 -0.71255 -0.29841 0.06333 1.42419 1.43769 1.44098 1.55830 1.90849 1.99217 2.37332 2.44171 2.66454 3.17533 3.34597 3.63129 3.72254 3.78316 3.92167 4.04948 4.17520 4.26727 4.31405 4.48947 4.52213 4.55010 4.62112 4.64059 4.71358 4.72821 4.82827 4.98934 5.02365 5.05189 5.15032 5.23423 5.26142 5.27177 5.31325 5.58439 5.77842 5.80119 5.90636 6.09592 6.29155 6.31847 6.91285 7.01158 7.42784 8.95101 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011556 B = 0.002775 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.313633 B =10087.663878 C =11385.469372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.506 3.494 3 O -0.576 6.576 4 N -0.666 5.666 5 C 0.109 3.891 6 C -0.072 4.072 7 C -0.126 4.126 8 C 0.003 3.997 9 C -0.169 4.169 10 C -0.668 4.668 11 S 2.716 3.284 12 O -0.987 6.987 13 O -0.976 6.976 14 N -1.103 6.103 15 C 0.125 3.875 16 C -0.104 4.104 17 C 0.022 3.978 18 C -0.539 4.539 19 H 0.062 0.938 20 C 0.000 4.000 21 N -0.932 5.932 22 Si 0.960 3.040 23 H -0.262 1.262 24 H -0.280 1.280 25 H -0.281 1.281 26 C -0.055 4.055 27 H 0.116 0.884 28 H 0.095 0.905 29 H 0.116 0.884 30 H 0.430 0.570 31 H 0.138 0.862 32 H 0.160 0.840 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.086 0.914 36 H 0.429 0.571 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.059 0.941 40 H 0.070 0.930 41 H 0.000 1.000 42 H -0.005 1.005 43 H 0.262 0.738 44 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.809 18.142 -8.312 21.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.297 3.703 3 O -0.455 6.455 4 N -0.314 5.314 5 C 0.014 3.986 6 C -0.093 4.093 7 C -0.145 4.145 8 C 0.001 3.999 9 C -0.225 4.225 10 C -0.757 4.757 11 S 2.807 3.193 12 O -0.977 6.977 13 O -0.966 6.966 14 N -0.866 5.866 15 C -0.001 4.001 16 C -0.143 4.143 17 C -0.016 4.016 18 C -0.577 4.577 19 H 0.080 0.920 20 C -0.198 4.198 21 N -0.573 5.573 22 Si 0.786 3.214 23 H -0.186 1.186 24 H -0.206 1.206 25 H -0.207 1.207 26 C -0.076 4.076 27 H 0.134 0.866 28 H 0.114 0.886 29 H 0.134 0.866 30 H 0.270 0.730 31 H 0.156 0.844 32 H 0.178 0.822 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.104 0.896 36 H 0.266 0.734 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.089 0.911 41 H 0.019 0.981 42 H 0.013 0.987 43 H 0.071 0.929 44 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -6.746 18.711 -9.114 21.879 hybrid contribution 0.050 -0.811 1.128 1.390 sum -6.696 17.900 -7.986 20.713 Atomic orbital electron populations 1.21970 0.86537 1.06761 1.06975 1.21952 0.92780 0.82146 0.73444 1.90724 1.71923 1.32796 1.50049 1.43662 1.03977 1.11212 1.72539 1.17841 0.84446 0.98079 0.98260 1.21551 0.95504 0.97261 0.94945 1.21370 0.93148 0.99484 1.00504 1.19818 0.97245 0.91477 0.91326 1.21626 0.89004 1.06633 1.05285 1.30480 1.06717 1.19318 1.19184 1.01015 0.72798 0.72837 0.72625 1.93528 1.65079 1.65187 1.73925 1.93528 1.58624 1.73955 1.70527 1.55180 1.18857 1.62098 1.50424 1.21328 0.94455 0.93622 0.90729 1.21622 0.98348 0.96293 0.98060 1.18990 0.94975 0.94133 0.93537 1.21734 0.97434 1.17117 1.21426 0.92016 1.25919 0.96441 0.99879 0.97558 1.70089 1.15080 1.39651 1.32437 0.85466 0.79271 0.78573 0.78127 1.18614 1.20553 1.20718 1.20803 0.91878 0.98718 0.96237 0.86572 0.88579 0.86576 0.73036 0.84396 0.82241 0.87777 0.87867 0.89573 0.73410 0.90963 0.91215 0.92226 0.91140 0.98115 0.98652 0.92883 0.82799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.10 10.32 71.24 0.74 -0.37 16 2 C 0.51 8.65 7.67 87.66 0.67 9.32 16 3 O -0.58 -15.12 14.85 -3.03 -0.05 -15.16 16 4 N -0.67 -10.83 5.34 -303.51 -1.62 -12.45 16 5 C 0.11 2.47 6.26 38.15 0.24 2.70 16 6 C -0.07 -1.67 8.65 22.39 0.19 -1.48 16 7 C -0.13 -2.65 9.71 22.25 0.22 -2.44 16 8 C 0.00 0.08 5.88 -19.84 -0.12 -0.04 16 9 C -0.17 -3.09 9.34 71.24 0.67 -2.43 16 10 C -0.67 -16.72 5.81 22.25 0.13 -16.59 16 11 S 2.72 72.66 4.94 -56.49 -0.28 72.38 16 12 O -0.99 -31.84 16.52 -128.00 -2.12 -33.96 16 13 O -0.98 -28.71 15.58 -128.00 -1.99 -30.70 16 14 N -1.10 -26.98 5.66 -187.48 -1.06 -28.05 16 15 C 0.12 3.69 6.19 86.38 0.54 4.22 16 16 C -0.10 -3.76 5.30 30.59 0.16 -3.60 16 17 C 0.02 1.06 4.97 29.85 0.15 1.21 16 18 C -0.54 -29.25 9.11 25.60 0.23 -29.02 16 19 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 20 C 0.00 -0.02 5.46 84.65 0.46 0.45 16 21 N -0.93 -54.96 13.29 21.44 0.28 -54.67 16 22 Si 0.96 43.05 29.54 68.60 2.03 45.08 16 23 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 24 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 25 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 26 C -0.05 -1.31 9.47 22.39 0.21 -1.10 16 27 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 28 H 0.10 0.72 8.12 -2.38 -0.02 0.70 16 29 H 0.12 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.43 4.07 8.82 -92.70 -0.82 3.25 16 31 H 0.14 3.19 6.50 -2.91 -0.02 3.17 16 32 H 0.16 2.44 8.06 -2.91 -0.02 2.41 16 33 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 34 H 0.10 1.46 8.11 -2.39 -0.02 1.44 16 35 H 0.09 1.76 4.80 -2.39 -0.01 1.74 16 36 H 0.43 8.59 8.67 -96.74 -0.84 7.75 16 37 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 38 H 0.07 2.17 7.79 -2.39 -0.02 2.15 16 39 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 41 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 42 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 43 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 44 H 0.15 3.31 7.34 -2.91 -0.02 3.29 16 Total: -1.00 -78.33 380.58 -0.93 -79.27 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: -0.62 Total: 17.43 kcal Atomic # 6 Polarization: -43.65 SS G_CDS: 4.49 Total: -39.16 kcal Atomic # 7 Polarization: -92.78 SS G_CDS: -2.40 Total: -95.17 kcal Atomic # 8 Polarization: -75.67 SS G_CDS: -4.15 Total: -79.82 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Atomic # 16 Polarization: 72.66 SS G_CDS: -0.28 Total: 72.38 kcal Total: -78.33 -0.93 -79.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609146678.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.904 kcal (2) G-P(sol) polarization free energy of solvation -78.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds