Wall clock time and date at job start Sat Apr 11 2020 05:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29954 * 126.28497 * 2 1 4 4 O 1.21299 * 110.24815 * 179.97438 * 3 2 1 5 5 C 1.33638 * 109.81183 * 359.97438 * 4 3 2 6 6 C 1.50706 * 126.54855 * 179.97438 * 5 4 3 7 7 H 1.08994 * 109.47206 * 168.87245 * 6 5 4 8 8 C 1.53000 * 109.47113 * 288.87239 * 6 5 4 9 9 N 1.46497 * 109.47390 * 48.87047 * 6 5 4 10 10 C 1.34773 * 120.00273 * 158.68696 * 9 6 5 11 11 O 1.21663 * 119.99714 * 4.30340 * 10 9 6 12 12 C 1.46893 * 120.00206 * 184.30513 * 10 9 6 13 13 C 1.36122 * 125.43479 * 185.34465 * 12 10 9 14 14 C 1.41705 * 107.74465 * 180.27755 * 13 12 10 15 15 C 1.40014 * 133.35076 * 179.77807 * 14 13 12 16 16 C 1.36574 * 119.83343 * 179.97438 * 15 14 13 17 17 C 1.38861 * 120.59886 * 359.95714 * 16 15 14 18 18 C 1.37844 * 120.63059 * 0.02562 * 17 16 15 19 19 C 1.39083 * 119.81565 * 359.97438 * 18 17 16 20 20 N 1.37834 * 133.16501 * 180.02562 * 19 18 17 21 21 C 1.36896 * 125.61800 * 359.97438 * 20 19 18 22 22 H 1.07998 * 120.00064 * 127.25864 * 21 20 19 23 23 C 1.39013 * 119.99971 * 307.25686 * 21 20 19 24 24 N 1.31350 * 120.00201 * 3.04444 * 23 21 20 25 25 Si 1.86799 * 120.00077 * 183.04409 * 23 21 20 26 26 H 1.48498 * 109.47083 * 185.04506 * 25 23 21 27 27 H 1.48499 * 109.46928 * 305.04635 * 25 23 21 28 28 H 1.48504 * 109.46908 * 65.04469 * 25 23 21 29 29 N 1.31123 * 106.89919 * 0.22928 * 5 4 3 30 30 H 1.09001 * 109.46924 * 89.98231 * 1 2 3 31 31 H 1.08997 * 109.47095 * 209.97506 * 1 2 3 32 32 H 1.08998 * 109.47729 * 329.98069 * 1 2 3 33 33 H 1.09002 * 109.47427 * 60.00036 * 8 6 5 34 34 H 1.08994 * 109.47564 * 180.02562 * 8 6 5 35 35 H 1.09008 * 109.47124 * 300.00262 * 8 6 5 36 36 H 0.97005 * 119.99988 * 338.69587 * 9 6 5 37 37 H 1.07995 * 126.12762 * 0.02562 * 13 12 10 38 38 H 1.08000 * 120.08684 * 359.97438 * 15 14 13 39 39 H 1.08003 * 119.70585 * 179.97438 * 16 15 14 40 40 H 1.07997 * 119.68175 * 180.02562 * 17 16 15 41 41 H 1.07998 * 120.08854 * 179.97438 * 18 17 16 42 42 H 0.97003 * 119.99604 * 354.33464 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0475 0.0000 4 8 3.4418 0.7124 0.0005 5 6 3.5298 -0.6210 0.0015 6 6 4.7970 -1.4368 0.0018 7 1 4.5567 -2.4812 0.2009 8 6 5.4781 -1.3216 -1.3634 9 7 5.6996 -0.9366 1.0416 10 6 6.6747 -1.7305 1.5265 11 8 6.8556 -2.8339 1.0468 12 6 7.5191 -1.2637 2.6342 13 6 8.5955 -1.9263 3.1395 14 6 9.1259 -1.1458 4.1966 15 6 10.2066 -1.3180 5.0699 16 6 10.4778 -0.3663 6.0112 17 6 9.6914 0.7738 6.1107 18 6 8.6223 0.9658 5.2620 19 6 8.3265 0.0106 4.2954 20 7 7.3501 -0.0797 3.3267 21 6 6.3702 0.8474 3.0936 22 1 6.2266 1.2429 2.0989 23 6 5.5599 1.2797 4.1371 24 7 5.7728 0.8440 5.3578 25 14 4.1682 2.4802 3.8034 26 1 3.5371 2.8759 5.0881 27 1 4.7069 3.6860 3.1244 28 1 3.1544 1.8330 2.9325 29 7 2.3030 -1.0840 -0.0035 30 1 -0.3633 0.0003 -1.0277 31 1 -0.3633 -0.8902 0.5134 32 1 -0.3634 0.8898 0.5141 33 1 5.7184 -0.2772 -1.5626 34 1 6.3943 -1.9119 -1.3634 35 1 4.8065 -1.6938 -2.1371 36 1 5.5954 -0.0339 1.3811 37 1 8.9746 -2.8784 2.7987 38 1 10.8242 -2.2012 4.9995 39 1 11.3117 -0.5015 6.6841 40 1 9.9195 1.5171 6.8603 41 1 8.0162 1.8556 5.3474 42 1 6.4408 0.1593 5.5188 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609170605.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:21 Heat of formation + Delta-G solvation = 90.958658 kcal Electronic energy + Delta-G solvation = -29666.390844 eV Core-core repulsion = 25615.308330 eV Total energy + Delta-G solvation = -4051.082514 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.60556 -40.83972 -39.02823 -36.26598 -36.14383 -35.71711 -33.87592 -32.63366 -30.73984 -30.53156 -29.19335 -29.04662 -28.06013 -25.09055 -24.89422 -23.62954 -23.06095 -21.20347 -20.91381 -20.19469 -19.69245 -18.65397 -18.12966 -17.44045 -16.82682 -15.91930 -15.78525 -15.20158 -14.96085 -14.71326 -14.42386 -14.15612 -14.04753 -13.76558 -13.71531 -13.24949 -13.19940 -13.08850 -12.84358 -12.65219 -12.38409 -12.27654 -12.16921 -11.91718 -11.57512 -11.41422 -11.22112 -11.03867 -10.97730 -10.61944 -10.47460 -10.37887 -10.01636 -9.96868 -9.65614 -9.29555 -8.96224 -8.86427 -7.67077 -7.12162 -6.72837 -4.92007 1.07346 1.57967 2.14967 2.51525 2.68154 2.86544 3.02020 3.05437 3.20177 3.22747 3.73582 3.78466 4.03254 4.07873 4.30655 4.55476 4.73985 4.76647 4.96957 5.14163 5.21578 5.30817 5.37313 5.44609 5.59393 5.64834 5.74489 5.76992 5.79844 5.92186 5.95762 6.11260 6.18634 6.31812 6.43970 6.60557 6.63531 6.78077 6.86364 7.16475 7.26502 7.36788 7.52003 7.63160 7.72876 7.89174 8.10109 8.13311 8.53144 8.67049 9.00677 10.09257 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013705 B = 0.004340 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.594101 B = 6449.452965 C = 8089.920727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.164 3.836 3 N -0.379 5.379 4 O 0.085 5.915 5 C 0.183 3.817 6 C 0.240 3.760 7 H 0.128 0.872 8 C -0.163 4.163 9 N -0.726 5.726 10 C 0.606 3.394 11 O -0.548 6.548 12 C -0.014 4.014 13 C -0.156 4.156 14 C -0.131 4.131 15 C -0.079 4.079 16 C -0.159 4.159 17 C -0.130 4.130 18 C -0.085 4.085 19 C 0.080 3.920 20 N -0.274 5.274 21 C -0.450 4.450 22 H 0.100 0.900 23 C 0.032 3.968 24 N -0.835 5.835 25 Si 1.072 2.928 26 H -0.269 1.269 27 H -0.272 1.272 28 H -0.277 1.277 29 N -0.473 5.473 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.420 0.580 37 H 0.137 0.863 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.111 0.889 41 H 0.120 0.880 42 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.793 -0.045 -7.478 8.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.108 4.108 3 N -0.087 5.087 4 O 0.027 5.973 5 C -0.038 4.038 6 C 0.132 3.868 7 H 0.145 0.855 8 C -0.222 4.222 9 N -0.389 5.389 10 C 0.396 3.604 11 O -0.426 6.426 12 C -0.128 4.128 13 C -0.184 4.184 14 C -0.136 4.136 15 C -0.098 4.098 16 C -0.179 4.179 17 C -0.150 4.150 18 C -0.105 4.105 19 C -0.034 4.034 20 N 0.060 4.940 21 C -0.577 4.577 22 H 0.117 0.883 23 C -0.184 4.184 24 N -0.463 5.463 25 Si 0.895 3.105 26 H -0.193 1.193 27 H -0.197 1.197 28 H -0.203 1.203 29 N -0.207 5.207 30 H 0.106 0.894 31 H 0.110 0.890 32 H 0.106 0.894 33 H 0.086 0.914 34 H 0.107 0.893 35 H 0.090 0.910 36 H 0.267 0.733 37 H 0.155 0.845 38 H 0.127 0.873 39 H 0.126 0.874 40 H 0.129 0.871 41 H 0.138 0.862 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.839 0.828 -7.148 9.267 hybrid contribution 1.189 -0.472 -0.416 1.345 sum -4.650 0.356 -7.564 8.886 Atomic orbital electron populations 1.20127 0.82840 1.04800 1.04129 1.25919 1.00632 0.83457 1.00830 1.74635 0.89304 1.23898 1.20855 1.85296 1.22420 1.24507 1.65085 1.28832 0.96877 0.82294 0.95816 1.19274 0.80490 0.96168 0.90834 0.85479 1.22253 1.02233 1.03767 0.93936 1.46816 1.32153 1.20051 1.39854 1.17156 0.78840 0.83679 0.80709 1.90743 1.70637 1.20764 1.60451 1.20170 1.01852 0.89941 1.00801 1.20475 0.98224 1.00626 0.99079 1.18051 0.98810 0.96768 0.99958 1.20144 0.96008 0.98478 0.95152 1.20363 1.01173 0.95715 1.00608 1.20650 0.96446 0.98174 0.99774 1.20222 0.97423 0.98458 0.94395 1.18626 0.90884 0.97452 0.96446 1.40074 1.18956 1.12141 1.22812 1.20353 1.13326 1.24281 0.99777 0.88326 1.26843 0.99729 1.00059 0.91793 1.70620 1.32127 1.23441 1.20154 0.83419 0.74518 0.75391 0.77154 1.19334 1.19691 1.20264 1.71852 0.99331 1.29474 1.20066 0.89377 0.88987 0.89436 0.91387 0.89320 0.91012 0.73292 0.84484 0.87276 0.87393 0.87077 0.86234 0.89232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.59 10.51 36.00 0.38 -0.22 16 2 C 0.16 2.43 8.22 -156.37 -1.28 1.15 16 3 N -0.38 -6.26 12.16 30.90 0.38 -5.88 16 4 O 0.09 1.43 11.22 18.11 0.20 1.63 16 5 C 0.18 2.92 7.21 -13.06 -0.09 2.83 16 6 C 0.24 3.68 3.05 -69.08 -0.21 3.47 16 7 H 0.13 1.97 7.76 -51.93 -0.40 1.56 16 8 C -0.16 -2.03 9.39 37.16 0.35 -1.68 16 9 N -0.73 -13.44 5.00 -56.18 -0.28 -13.72 16 10 C 0.61 12.71 7.68 -12.76 -0.10 12.62 16 11 O -0.55 -11.79 16.20 5.22 0.08 -11.70 16 12 C -0.01 -0.31 6.77 -82.25 -0.56 -0.87 16 13 C -0.16 -3.42 10.55 -39.02 -0.41 -3.83 16 14 C -0.13 -2.89 6.16 -106.89 -0.66 -3.55 16 15 C -0.08 -1.50 10.06 -39.52 -0.40 -1.90 16 16 C -0.16 -2.85 9.97 -39.95 -0.40 -3.25 16 17 C -0.13 -2.48 10.02 -39.49 -0.40 -2.88 16 18 C -0.09 -1.90 8.24 -39.41 -0.32 -2.22 16 19 C 0.08 1.89 5.24 -83.84 -0.44 1.45 16 20 N -0.27 -6.60 2.64 -56.08 -0.15 -6.74 16 21 C -0.45 -10.67 7.75 -15.00 -0.12 -10.79 16 22 H 0.10 2.20 6.21 -52.49 -0.33 1.88 16 23 C 0.03 0.77 5.15 -17.47 -0.09 0.68 16 24 N -0.84 -21.80 12.36 55.50 0.69 -21.11 16 25 Si 1.07 21.58 29.92 -169.99 -5.09 16.49 16 26 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 27 H -0.27 -5.15 7.11 56.52 0.40 -4.74 16 28 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 29 N -0.47 -7.50 11.55 -9.87 -0.11 -7.62 16 30 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.09 1.17 7.75 -51.93 -0.40 0.76 16 35 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 36 H 0.42 8.16 4.33 -40.82 -0.18 7.98 16 37 H 0.14 2.72 8.06 -52.49 -0.42 2.29 16 38 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 39 H 0.11 1.58 8.06 -52.48 -0.42 1.15 16 40 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 41 H 0.12 2.78 7.16 -52.49 -0.38 2.40 16 42 H 0.29 7.96 5.51 -40.82 -0.23 7.73 16 LS Contribution 360.00 15.07 5.43 5.43 Total: -1.00 -28.91 360.00 -8.11 -37.02 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: -4.51 Total: 15.21 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: -4.75 Total: -9.00 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: 0.52 Total: -55.08 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.29 Total: -10.07 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.09 Total: 16.49 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -28.91 -8.11 -37.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609170605.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.982 kcal (2) G-P(sol) polarization free energy of solvation -28.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds