Wall clock time and date at job start Sat Apr 11 2020 05:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29954 * 126.28497 * 2 1 4 4 O 1.21299 * 110.24815 * 179.97438 * 3 2 1 5 5 C 1.33638 * 109.81183 * 359.97438 * 4 3 2 6 6 C 1.50706 * 126.54855 * 179.97438 * 5 4 3 7 7 H 1.08994 * 109.47206 * 168.87245 * 6 5 4 8 8 C 1.53000 * 109.47113 * 288.87239 * 6 5 4 9 9 N 1.46497 * 109.47390 * 48.87047 * 6 5 4 10 10 C 1.34773 * 120.00273 * 158.68696 * 9 6 5 11 11 O 1.21663 * 119.99714 * 4.30340 * 10 9 6 12 12 C 1.46893 * 120.00206 * 184.30513 * 10 9 6 13 13 C 1.36122 * 125.43479 * 185.34465 * 12 10 9 14 14 C 1.41705 * 107.74465 * 180.27755 * 13 12 10 15 15 C 1.40014 * 133.35076 * 179.77807 * 14 13 12 16 16 C 1.36574 * 119.83343 * 179.97438 * 15 14 13 17 17 C 1.38861 * 120.59886 * 359.95714 * 16 15 14 18 18 C 1.37844 * 120.63059 * 0.02562 * 17 16 15 19 19 C 1.39083 * 119.81565 * 359.97438 * 18 17 16 20 20 N 1.37834 * 133.16501 * 180.02562 * 19 18 17 21 21 C 1.36896 * 125.61800 * 359.97438 * 20 19 18 22 22 H 1.07998 * 120.00064 * 127.25864 * 21 20 19 23 23 C 1.39013 * 119.99971 * 307.25686 * 21 20 19 24 24 N 1.31350 * 120.00201 * 3.04444 * 23 21 20 25 25 Si 1.86799 * 120.00077 * 183.04409 * 23 21 20 26 26 H 1.48498 * 109.47083 * 185.04506 * 25 23 21 27 27 H 1.48499 * 109.46928 * 305.04635 * 25 23 21 28 28 H 1.48504 * 109.46908 * 65.04469 * 25 23 21 29 29 N 1.31123 * 106.89919 * 0.22928 * 5 4 3 30 30 H 1.09001 * 109.46924 * 89.98231 * 1 2 3 31 31 H 1.08997 * 109.47095 * 209.97506 * 1 2 3 32 32 H 1.08998 * 109.47729 * 329.98069 * 1 2 3 33 33 H 1.09002 * 109.47427 * 60.00036 * 8 6 5 34 34 H 1.08994 * 109.47564 * 180.02562 * 8 6 5 35 35 H 1.09008 * 109.47124 * 300.00262 * 8 6 5 36 36 H 0.97005 * 119.99988 * 338.69587 * 9 6 5 37 37 H 1.07995 * 126.12762 * 0.02562 * 13 12 10 38 38 H 1.08000 * 120.08684 * 359.97438 * 15 14 13 39 39 H 1.08003 * 119.70585 * 179.97438 * 16 15 14 40 40 H 1.07997 * 119.68175 * 180.02562 * 17 16 15 41 41 H 1.07998 * 120.08854 * 179.97438 * 18 17 16 42 42 H 0.97003 * 119.99604 * 354.33464 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0475 0.0000 4 8 3.4418 0.7124 0.0005 5 6 3.5298 -0.6210 0.0015 6 6 4.7970 -1.4368 0.0018 7 1 4.5567 -2.4812 0.2009 8 6 5.4781 -1.3216 -1.3634 9 7 5.6996 -0.9366 1.0416 10 6 6.6747 -1.7305 1.5265 11 8 6.8556 -2.8339 1.0468 12 6 7.5191 -1.2637 2.6342 13 6 8.5955 -1.9263 3.1395 14 6 9.1259 -1.1458 4.1966 15 6 10.2066 -1.3180 5.0699 16 6 10.4778 -0.3663 6.0112 17 6 9.6914 0.7738 6.1107 18 6 8.6223 0.9658 5.2620 19 6 8.3265 0.0106 4.2954 20 7 7.3501 -0.0797 3.3267 21 6 6.3702 0.8474 3.0936 22 1 6.2266 1.2429 2.0989 23 6 5.5599 1.2797 4.1371 24 7 5.7728 0.8440 5.3578 25 14 4.1682 2.4802 3.8034 26 1 3.5371 2.8759 5.0881 27 1 4.7069 3.6860 3.1244 28 1 3.1544 1.8330 2.9325 29 7 2.3030 -1.0840 -0.0035 30 1 -0.3633 0.0003 -1.0277 31 1 -0.3633 -0.8902 0.5134 32 1 -0.3634 0.8898 0.5141 33 1 5.7184 -0.2772 -1.5626 34 1 6.3943 -1.9119 -1.3634 35 1 4.8065 -1.6938 -2.1371 36 1 5.5954 -0.0339 1.3811 37 1 8.9746 -2.8784 2.7987 38 1 10.8242 -2.2012 4.9995 39 1 11.3117 -0.5015 6.6841 40 1 9.9195 1.5171 6.8603 41 1 8.0162 1.8556 5.3474 42 1 6.4408 0.1593 5.5188 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609170605.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:21 Heat of formation + Delta-G solvation = 73.759422 kcal Electronic energy + Delta-G solvation = -29667.136659 eV Core-core repulsion = 25615.308330 eV Total energy + Delta-G solvation = -4051.828328 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -46.80550 -42.49865 -40.58860 -37.80520 -37.45492 -37.04663 -35.61646 -33.92926 -32.37438 -31.86712 -30.66009 -30.12886 -29.64297 -26.67410 -26.33008 -24.97053 -24.38330 -22.81439 -22.34154 -21.67080 -21.30968 -20.29642 -19.35436 -18.74303 -18.36557 -17.52754 -17.27612 -16.79615 -16.50064 -16.14842 -15.97179 -15.75498 -15.26081 -15.10579 -14.86865 -14.76910 -14.53702 -14.32283 -14.21898 -13.97924 -13.81193 -13.60939 -13.35580 -13.24898 -12.85387 -12.71080 -12.53248 -12.46633 -12.26985 -12.20703 -12.11959 -12.07158 -11.58328 -11.37029 -11.12340 -11.05447 -10.55773 -10.42120 -9.46104 -8.82914 -8.43729 -6.77548 -0.17062 -0.04073 0.93523 0.98481 1.20432 1.37915 1.41074 1.47964 1.60845 1.85830 2.09912 2.38577 2.55542 2.66026 2.76425 2.93737 3.15907 3.58594 3.80088 3.85792 4.00344 4.08119 4.30961 4.36063 4.40889 4.52336 4.54905 4.56851 4.62167 4.67441 4.70858 4.74212 4.84026 5.02182 5.02825 5.08038 5.12760 5.18730 5.25750 5.39265 5.68572 5.75582 5.81159 5.99108 6.03574 6.30568 6.43055 6.77926 6.90994 7.03143 7.25220 8.19490 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013705 B = 0.004340 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.594101 B = 6449.452965 C = 8089.920727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.166 3.834 3 N -0.400 5.400 4 O 0.070 5.930 5 C 0.182 3.818 6 C 0.239 3.761 7 H 0.126 0.874 8 C -0.154 4.154 9 N -0.722 5.722 10 C 0.606 3.394 11 O -0.559 6.559 12 C -0.039 4.039 13 C -0.158 4.158 14 C -0.151 4.151 15 C -0.079 4.079 16 C -0.153 4.153 17 C -0.116 4.116 18 C -0.119 4.119 19 C 0.055 3.945 20 N -0.295 5.295 21 C -0.453 4.453 22 H 0.105 0.895 23 C -0.001 4.001 24 N -0.865 5.865 25 Si 1.112 2.888 26 H -0.273 1.273 27 H -0.252 1.252 28 H -0.275 1.275 29 N -0.484 5.484 30 H 0.114 0.886 31 H 0.103 0.897 32 H 0.098 0.902 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.416 0.584 37 H 0.154 0.846 38 H 0.143 0.857 39 H 0.153 0.847 40 H 0.141 0.859 41 H 0.097 0.903 42 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.511 -0.256 -7.736 8.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.107 4.107 3 N -0.111 5.111 4 O 0.015 5.985 5 C -0.040 4.040 6 C 0.132 3.868 7 H 0.144 0.856 8 C -0.213 4.213 9 N -0.383 5.383 10 C 0.395 3.605 11 O -0.438 6.438 12 C -0.152 4.152 13 C -0.186 4.186 14 C -0.155 4.155 15 C -0.097 4.097 16 C -0.171 4.171 17 C -0.136 4.136 18 C -0.139 4.139 19 C -0.058 4.058 20 N 0.038 4.962 21 C -0.580 4.580 22 H 0.122 0.878 23 C -0.211 4.211 24 N -0.494 5.494 25 Si 0.930 3.070 26 H -0.198 1.198 27 H -0.176 1.176 28 H -0.201 1.201 29 N -0.219 5.219 30 H 0.132 0.868 31 H 0.122 0.878 32 H 0.117 0.883 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.116 0.884 36 H 0.262 0.738 37 H 0.172 0.828 38 H 0.161 0.839 39 H 0.171 0.829 40 H 0.159 0.841 41 H 0.116 0.884 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.532 0.621 -7.434 9.287 hybrid contribution 1.189 -0.465 -0.303 1.312 sum -4.343 0.156 -7.737 8.874 Atomic orbital electron populations 1.20427 0.79523 1.05922 1.06131 1.26824 1.02451 0.82594 0.98794 1.74633 0.89351 1.24716 1.22432 1.85273 1.22872 1.24685 1.65656 1.28890 0.97101 0.82279 0.95720 1.19491 0.80134 0.95781 0.91357 0.85605 1.22212 1.02176 1.04245 0.92681 1.46731 1.31912 1.19425 1.40202 1.17021 0.79248 0.83711 0.80542 1.90717 1.71197 1.21047 1.60863 1.20584 1.02756 0.90270 1.01613 1.20777 0.97829 1.01071 0.98928 1.18445 0.99906 0.96302 1.00870 1.20594 0.95075 0.99899 0.94172 1.20847 1.01594 0.94288 1.00401 1.21099 0.94686 0.99104 0.98693 1.20246 0.99192 0.98253 0.96186 1.19064 0.91465 0.98574 0.96701 1.40214 1.19618 1.12723 1.23672 1.20542 1.13245 1.24181 1.00014 0.87805 1.27938 1.00936 1.00776 0.91402 1.70704 1.32861 1.24637 1.21243 0.82944 0.72508 0.74670 0.76868 1.19802 1.17642 1.20079 1.71888 0.99426 1.30071 1.20486 0.86802 0.87815 0.88296 0.90810 0.89905 0.88449 0.73836 0.82809 0.83936 0.82942 0.84113 0.88437 0.90898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.07 10.51 71.23 0.75 -0.32 16 2 C 0.17 4.69 8.22 138.46 1.14 5.83 16 3 N -0.40 -12.91 12.16 -60.32 -0.73 -13.64 16 4 O 0.07 2.31 11.22 74.88 0.84 3.15 16 5 C 0.18 5.72 7.21 88.38 0.64 6.36 16 6 C 0.24 7.30 3.05 44.25 0.14 7.44 16 7 H 0.13 3.89 7.76 -2.39 -0.02 3.87 16 8 C -0.15 -3.71 9.39 71.98 0.68 -3.03 16 9 N -0.72 -27.23 5.00 -449.89 -2.25 -29.48 16 10 C 0.61 25.91 7.68 86.51 0.66 26.57 16 11 O -0.56 -24.24 16.20 -4.23 -0.07 -24.31 16 12 C -0.04 -1.83 6.77 39.91 0.27 -1.56 16 13 C -0.16 -6.97 10.55 22.63 0.24 -6.73 16 14 C -0.15 -6.61 6.16 -21.34 -0.13 -6.74 16 15 C -0.08 -2.80 10.06 22.31 0.22 -2.58 16 16 C -0.15 -4.94 9.97 22.03 0.22 -4.72 16 17 C -0.12 -4.22 10.02 22.33 0.22 -4.00 16 18 C -0.12 -5.37 8.24 22.38 0.18 -5.19 16 19 C 0.06 2.68 5.24 39.06 0.20 2.89 16 20 N -0.30 -14.69 2.64 -331.34 -0.87 -15.56 16 21 C -0.45 -22.22 7.75 84.09 0.65 -21.56 16 22 H 0.10 4.80 6.21 -2.91 -0.02 4.78 16 23 C 0.00 -0.03 5.15 84.95 0.44 0.41 16 24 N -0.86 -46.85 12.36 21.67 0.27 -46.58 16 25 Si 1.11 44.42 29.92 68.60 2.05 46.47 16 26 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 27 H -0.25 -9.20 7.11 99.48 0.71 -8.49 16 28 H -0.28 -10.82 7.11 99.48 0.71 -10.12 16 29 N -0.48 -14.93 11.55 -303.20 -3.50 -18.43 16 30 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.08 2.12 7.75 -2.39 -0.02 2.10 16 35 H 0.10 1.84 8.14 -2.38 -0.02 1.82 16 36 H 0.42 16.60 4.33 -92.70 -0.40 16.20 16 37 H 0.15 6.03 8.06 -2.91 -0.02 6.01 16 38 H 0.14 4.05 8.06 -2.91 -0.02 4.03 16 39 H 0.15 3.62 8.06 -2.91 -0.02 3.59 16 40 H 0.14 4.20 8.06 -2.91 -0.02 4.17 16 41 H 0.10 4.76 7.16 -2.91 -0.02 4.73 16 42 H 0.28 15.77 5.51 -92.71 -0.51 15.26 16 Total: -1.00 -64.81 360.00 3.20 -61.62 By element: Atomic # 1 Polarization: 42.78 SS G_CDS: 0.94 Total: 43.72 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: 6.52 Total: -6.95 kcal Atomic # 7 Polarization: -116.61 SS G_CDS: -7.09 Total: -123.70 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: 0.77 Total: -21.16 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.05 Total: 46.47 kcal Total: -64.81 3.20 -61.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609170605.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.375 kcal (2) G-P(sol) polarization free energy of solvation -64.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds