Wall clock time and date at job start Sat Apr 11 2020 05:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42897 * 114.00050 * 2 1 4 4 C 1.52996 * 109.47136 * 184.88705 * 3 2 1 5 5 N 1.46897 * 109.46746 * 63.68892 * 4 3 2 6 6 C 1.46907 * 110.99909 * 199.90904 * 5 4 3 7 7 C 1.50697 * 109.46982 * 66.04562 * 6 5 4 8 8 H 1.08000 * 119.99871 * 359.97438 * 7 6 5 9 9 C 1.37879 * 120.00155 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99648 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00390 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.46985 * 89.99665 * 11 9 7 13 13 H 1.48496 * 109.47188 * 209.99819 * 11 9 7 14 14 H 1.48500 * 109.46633 * 329.99907 * 11 9 7 15 15 C 1.46900 * 111.00382 * 75.95814 * 5 4 3 16 16 C 1.50698 * 109.47135 * 199.59874 * 15 5 4 17 17 O 1.21283 * 120.00290 * 4.73399 * 16 15 5 18 18 N 1.34778 * 119.99883 * 184.73067 * 16 15 5 19 19 C 1.39927 * 119.99933 * 181.79633 * 18 16 15 20 20 C 1.38869 * 120.06593 * 337.05716 * 19 18 16 21 21 C 1.38208 * 119.91790 * 180.02562 * 20 19 18 22 22 Cl 1.73593 * 119.97815 * 180.02562 * 21 20 19 23 23 C 1.38417 * 120.04433 * 0.02562 * 21 20 19 24 24 C 1.38245 * 120.12722 * 0.25344 * 23 21 20 25 25 C 1.38145 * 120.08276 * 359.49200 * 24 23 21 26 26 C 1.50699 * 120.02312 * 180.23281 * 25 24 23 27 27 H 1.09005 * 109.46745 * 184.89810 * 1 2 3 28 28 H 1.09000 * 109.47054 * 304.89771 * 1 2 3 29 29 H 1.08997 * 109.46951 * 64.89879 * 1 2 3 30 30 H 1.09007 * 109.46984 * 64.88742 * 3 2 1 31 31 H 1.08996 * 109.47098 * 304.89179 * 3 2 1 32 32 H 1.08996 * 109.47261 * 303.68436 * 4 3 2 33 33 H 1.09008 * 109.47038 * 183.68533 * 4 3 2 34 34 H 1.08995 * 109.47343 * 186.04504 * 6 5 4 35 35 H 1.08999 * 109.47110 * 306.04792 * 6 5 4 36 36 H 0.97004 * 119.99859 * 180.02562 * 10 9 7 37 37 H 1.08995 * 109.47235 * 79.59687 * 15 5 4 38 38 H 1.09004 * 109.47017 * 319.59503 * 15 5 4 39 39 H 0.96998 * 120.00263 * 1.80580 * 18 16 15 40 40 H 1.08002 * 120.03672 * 0.04307 * 20 19 18 41 41 H 1.08002 * 119.93927 * 179.97438 * 23 21 20 42 42 H 1.08001 * 119.95840 * 179.74629 * 24 23 21 43 43 H 1.09003 * 109.46836 * 270.28076 * 26 25 24 44 44 H 1.08999 * 109.46971 * 30.27306 * 26 25 24 45 45 H 1.08999 * 109.47036 * 150.27528 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5307 1.1867 -0.1229 5 7 3.8714 0.5801 -1.4166 6 6 5.2296 0.0205 -1.3943 7 6 5.2800 -1.1373 -0.4310 8 1 4.3921 -1.4280 0.1107 9 6 6.4599 -1.8247 -0.2405 10 7 7.5412 -1.4702 -0.8999 11 14 6.5227 -3.2594 0.9540 12 1 6.1954 -4.5168 0.2350 13 1 7.8859 -3.3613 1.5340 14 1 5.5367 -3.0405 2.0426 15 6 3.7197 1.5502 -2.5093 16 6 3.5998 0.8160 -3.8198 17 8 3.5505 -0.3958 -3.8338 18 7 3.5471 1.5059 -4.9764 19 6 3.3979 0.8262 -6.1904 20 6 3.7712 -0.5075 -6.2914 21 6 3.6230 -1.1758 -7.4921 22 17 4.0887 -2.8432 -7.6200 23 6 3.1036 -0.5164 -8.5927 24 6 2.7366 0.8129 -8.4957 25 6 2.8776 1.4845 -7.2968 26 6 2.4723 2.9322 -7.1912 27 1 -0.3633 -1.0240 0.0878 28 1 -0.3633 0.5879 0.8429 29 1 -0.3633 0.4359 -0.9306 30 1 1.7596 1.8148 0.9306 31 1 1.6211 1.8764 -0.8429 32 1 3.9127 0.5611 0.6837 33 1 3.9790 2.1782 -0.0571 34 1 5.4963 -0.3257 -2.3928 35 1 5.9339 0.7890 -1.0759 36 1 8.3713 -1.9541 -0.7662 37 1 4.5909 2.2045 -2.5378 38 1 2.8225 2.1467 -2.3436 39 1 3.6127 2.4736 -4.9673 40 1 4.1767 -1.0220 -5.4327 41 1 2.9889 -1.0401 -9.5302 42 1 2.3354 1.3259 -9.3573 43 1 3.3224 3.5667 -7.4421 44 1 1.6536 3.1315 -7.8826 45 1 2.1479 3.1453 -6.1727 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610391556.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:36 Heat of formation + Delta-G solvation = -43.136012 kcal Electronic energy + Delta-G solvation = -27612.614335 eV Core-core repulsion = 23656.824534 eV Total energy + Delta-G solvation = -3955.789801 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.59466 -38.69585 -37.62978 -36.47686 -35.88610 -34.53705 -32.49152 -32.44216 -30.43444 -29.45221 -28.03803 -26.80925 -26.07357 -24.92881 -23.09438 -22.28962 -21.49178 -20.66241 -19.74397 -17.86792 -16.97133 -16.51551 -16.12306 -15.82449 -15.62771 -15.30753 -14.90304 -14.74457 -14.48261 -14.33167 -14.04950 -13.82793 -13.50095 -13.46608 -13.18754 -12.88664 -12.78531 -12.37175 -12.00020 -11.84720 -11.80227 -11.69279 -11.57112 -11.26660 -11.25240 -11.06481 -10.84632 -10.68253 -10.56742 -10.31175 -10.11456 -9.77130 -9.30784 -9.23518 -9.02567 -8.60674 -8.32781 -8.00299 -7.27011 -5.92146 -3.90783 1.09967 1.31438 2.24323 2.92539 3.09297 3.41776 3.47586 3.51802 3.67678 4.23825 4.51876 4.65099 4.77186 4.79745 4.96646 5.07470 5.20077 5.30639 5.33820 5.35918 5.43722 5.46589 5.52539 5.56433 5.61465 5.69626 5.71873 5.74997 5.79447 5.87264 5.91932 6.08494 6.12873 6.30744 6.34775 6.44965 6.63095 6.98160 7.21237 7.27241 7.50659 7.65102 7.89734 8.12890 8.19938 8.45365 8.61663 9.17247 9.72215 11.19340 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.008833 B = 0.003772 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3169.136842 B = 7422.132709 C = 9186.355859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.361 6.361 3 C 0.069 3.931 4 C 0.060 3.940 5 N -0.507 5.507 6 C 0.196 3.804 7 C -0.496 4.496 8 H 0.068 0.932 9 C 0.054 3.946 10 N -0.902 5.902 11 Si 0.897 3.103 12 H -0.281 1.281 13 H -0.289 1.289 14 H -0.273 1.273 15 C 0.037 3.963 16 C 0.508 3.492 17 O -0.467 6.467 18 N -0.679 5.679 19 C 0.175 3.825 20 C -0.129 4.129 21 C -0.016 4.016 22 Cl -0.069 7.069 23 C -0.137 4.137 24 C -0.090 4.090 25 C -0.127 4.127 26 C -0.112 4.112 27 H 0.080 0.920 28 H 0.031 0.969 29 H 0.032 0.968 30 H 0.042 0.958 31 H 0.036 0.964 32 H 0.102 0.898 33 H 0.038 0.962 34 H 0.036 0.964 35 H -0.012 1.012 36 H 0.259 0.741 37 H 0.057 0.943 38 H 0.090 0.910 39 H 0.408 0.592 40 H 0.173 0.827 41 H 0.129 0.871 42 H 0.131 0.869 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.039 12.025 -11.975 20.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.279 6.279 3 C -0.008 4.008 4 C -0.068 4.068 5 N -0.232 5.232 6 C 0.071 3.929 7 C -0.535 4.535 8 H 0.086 0.914 9 C -0.146 4.146 10 N -0.542 5.542 11 Si 0.725 3.275 12 H -0.207 1.207 13 H -0.216 1.216 14 H -0.198 1.198 15 C -0.095 4.095 16 C 0.295 3.705 17 O -0.336 6.336 18 N -0.325 5.325 19 C 0.078 3.922 20 C -0.150 4.150 21 C -0.043 4.043 22 Cl -0.040 7.040 23 C -0.157 4.157 24 C -0.109 4.109 25 C -0.130 4.130 26 C -0.169 4.169 27 H 0.099 0.901 28 H 0.050 0.950 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.120 0.880 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.005 0.995 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.108 0.892 39 H 0.244 0.756 40 H 0.190 0.810 41 H 0.147 0.853 42 H 0.149 0.851 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.042 10.379 -11.946 19.886 hybrid contribution 0.545 0.452 0.574 0.911 sum -11.497 10.831 -11.372 19.464 Atomic orbital electron populations 1.22663 0.82875 1.02148 0.98819 1.88159 1.17739 1.27002 1.94953 1.22619 0.95063 0.84966 0.98163 1.22086 0.92297 0.97996 0.94431 1.61781 1.32049 1.29479 0.99905 1.19801 0.80513 0.93991 0.98551 1.21143 0.95633 1.13751 1.22985 0.91398 1.24951 0.95622 0.97550 0.96479 1.69960 1.00646 1.41228 1.42404 0.86513 0.76832 0.82983 0.81189 1.20675 1.21551 1.19819 1.21911 1.01739 0.94777 0.91044 1.21150 0.75802 0.88739 0.84822 1.90676 1.43513 1.13550 1.85889 1.43758 1.73445 1.10686 1.04564 1.17493 0.97180 0.91969 0.85539 1.21798 1.00689 0.94029 0.98480 1.20774 1.01992 0.86321 0.95194 1.98373 1.90779 1.16575 1.98240 1.20936 1.02010 0.94927 0.97850 1.20673 1.00004 0.93541 0.96672 1.19657 1.02692 0.97287 0.93337 1.20704 1.01673 0.91744 1.02746 0.90134 0.95041 0.94905 0.93995 0.94612 0.87971 0.94399 0.94548 0.99459 0.93128 0.92482 0.89168 0.75603 0.81047 0.85277 0.85131 0.91046 0.91058 0.91692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.55 16 2 O -0.36 -6.65 10.63 -35.23 -0.37 -7.03 16 3 C 0.07 1.07 6.11 37.16 0.23 1.30 16 4 C 0.06 1.10 5.18 -3.83 -0.02 1.08 16 5 N -0.51 -10.76 3.89 -237.52 -0.92 -11.68 16 6 C 0.20 5.13 4.36 -4.97 -0.02 5.11 16 7 C -0.50 -14.36 8.23 -34.44 -0.28 -14.65 16 8 H 0.07 2.00 7.31 -52.49 -0.38 1.62 16 9 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 10 N -0.90 -27.48 13.29 55.43 0.74 -26.74 16 11 Si 0.90 22.63 29.54 -169.99 -5.02 17.61 16 12 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 13 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 14 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 15 C 0.04 0.61 5.30 -4.98 -0.03 0.58 16 16 C 0.51 8.92 7.29 -10.99 -0.08 8.84 16 17 O -0.47 -10.51 12.30 5.55 0.07 -10.44 16 18 N -0.68 -9.04 5.02 -9.87 -0.05 -9.09 16 19 C 0.17 2.48 6.46 -83.70 -0.54 1.94 16 20 C -0.13 -2.17 8.59 -39.36 -0.34 -2.51 16 21 C -0.02 -0.23 6.32 -39.53 -0.25 -0.48 16 22 Cl -0.07 -1.02 28.95 -51.86 -1.50 -2.53 16 23 C -0.14 -1.63 9.83 -39.51 -0.39 -2.01 16 24 C -0.09 -0.93 9.70 -39.61 -0.38 -1.31 16 25 C -0.13 -1.40 5.90 -104.43 -0.62 -2.01 16 26 C -0.11 -0.83 9.45 36.01 0.34 -0.49 16 27 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.04 0.55 8.14 -51.92 -0.42 0.12 16 31 H 0.04 0.49 6.69 -51.93 -0.35 0.14 16 32 H 0.10 2.16 6.58 -51.93 -0.34 1.82 16 33 H 0.04 0.60 8.00 -51.92 -0.42 0.18 16 34 H 0.04 1.06 6.85 -51.93 -0.36 0.70 16 35 H -0.01 -0.33 8.12 -51.93 -0.42 -0.75 16 36 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 37 H 0.06 0.85 8.00 -51.93 -0.42 0.43 16 38 H 0.09 1.16 6.47 -51.93 -0.34 0.83 16 39 H 0.41 3.82 7.32 -40.82 -0.30 3.52 16 40 H 0.17 3.51 5.40 -52.49 -0.28 3.23 16 41 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 42 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 43 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 45 H 0.06 0.45 6.95 -51.93 -0.36 0.08 16 LS Contribution 385.01 15.07 5.80 5.80 Total: -1.00 -35.40 385.01 -9.10 -44.50 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -6.47 Total: 1.16 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -1.37 Total: -1.56 kcal Atomic # 7 Polarization: -47.28 SS G_CDS: -0.24 Total: -47.51 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: -0.31 Total: -17.47 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -1.50 Total: -2.53 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.40 -9.10 -44.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610391556.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.364 kcal (2) G-P(sol) polarization free energy of solvation -35.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds