Wall clock time and date at job start Sat Apr 11 2020 05:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42897 * 114.00050 * 2 1 4 4 C 1.52996 * 109.47136 * 184.88705 * 3 2 1 5 5 N 1.46897 * 109.46746 * 63.68892 * 4 3 2 6 6 C 1.46907 * 110.99909 * 199.90904 * 5 4 3 7 7 C 1.50697 * 109.46982 * 66.04562 * 6 5 4 8 8 H 1.08000 * 119.99871 * 359.97438 * 7 6 5 9 9 C 1.37879 * 120.00155 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99648 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00390 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.46985 * 89.99665 * 11 9 7 13 13 H 1.48496 * 109.47188 * 209.99819 * 11 9 7 14 14 H 1.48500 * 109.46633 * 329.99907 * 11 9 7 15 15 C 1.46900 * 111.00382 * 75.95814 * 5 4 3 16 16 C 1.50698 * 109.47135 * 199.59874 * 15 5 4 17 17 O 1.21283 * 120.00290 * 4.73399 * 16 15 5 18 18 N 1.34778 * 119.99883 * 184.73067 * 16 15 5 19 19 C 1.39927 * 119.99933 * 181.79633 * 18 16 15 20 20 C 1.38869 * 120.06593 * 337.05716 * 19 18 16 21 21 C 1.38208 * 119.91790 * 180.02562 * 20 19 18 22 22 Cl 1.73593 * 119.97815 * 180.02562 * 21 20 19 23 23 C 1.38417 * 120.04433 * 0.02562 * 21 20 19 24 24 C 1.38245 * 120.12722 * 0.25344 * 23 21 20 25 25 C 1.38145 * 120.08276 * 359.49200 * 24 23 21 26 26 C 1.50699 * 120.02312 * 180.23281 * 25 24 23 27 27 H 1.09005 * 109.46745 * 184.89810 * 1 2 3 28 28 H 1.09000 * 109.47054 * 304.89771 * 1 2 3 29 29 H 1.08997 * 109.46951 * 64.89879 * 1 2 3 30 30 H 1.09007 * 109.46984 * 64.88742 * 3 2 1 31 31 H 1.08996 * 109.47098 * 304.89179 * 3 2 1 32 32 H 1.08996 * 109.47261 * 303.68436 * 4 3 2 33 33 H 1.09008 * 109.47038 * 183.68533 * 4 3 2 34 34 H 1.08995 * 109.47343 * 186.04504 * 6 5 4 35 35 H 1.08999 * 109.47110 * 306.04792 * 6 5 4 36 36 H 0.97004 * 119.99859 * 180.02562 * 10 9 7 37 37 H 1.08995 * 109.47235 * 79.59687 * 15 5 4 38 38 H 1.09004 * 109.47017 * 319.59503 * 15 5 4 39 39 H 0.96998 * 120.00263 * 1.80580 * 18 16 15 40 40 H 1.08002 * 120.03672 * 0.04307 * 20 19 18 41 41 H 1.08002 * 119.93927 * 179.97438 * 23 21 20 42 42 H 1.08001 * 119.95840 * 179.74629 * 24 23 21 43 43 H 1.09003 * 109.46836 * 270.28076 * 26 25 24 44 44 H 1.08999 * 109.46971 * 30.27306 * 26 25 24 45 45 H 1.08999 * 109.47036 * 150.27528 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5307 1.1867 -0.1229 5 7 3.8714 0.5801 -1.4166 6 6 5.2296 0.0205 -1.3943 7 6 5.2800 -1.1373 -0.4310 8 1 4.3921 -1.4280 0.1107 9 6 6.4599 -1.8247 -0.2405 10 7 7.5412 -1.4702 -0.8999 11 14 6.5227 -3.2594 0.9540 12 1 6.1954 -4.5168 0.2350 13 1 7.8859 -3.3613 1.5340 14 1 5.5367 -3.0405 2.0426 15 6 3.7197 1.5502 -2.5093 16 6 3.5998 0.8160 -3.8198 17 8 3.5505 -0.3958 -3.8338 18 7 3.5471 1.5059 -4.9764 19 6 3.3979 0.8262 -6.1904 20 6 3.7712 -0.5075 -6.2914 21 6 3.6230 -1.1758 -7.4921 22 17 4.0887 -2.8432 -7.6200 23 6 3.1036 -0.5164 -8.5927 24 6 2.7366 0.8129 -8.4957 25 6 2.8776 1.4845 -7.2968 26 6 2.4723 2.9322 -7.1912 27 1 -0.3633 -1.0240 0.0878 28 1 -0.3633 0.5879 0.8429 29 1 -0.3633 0.4359 -0.9306 30 1 1.7596 1.8148 0.9306 31 1 1.6211 1.8764 -0.8429 32 1 3.9127 0.5611 0.6837 33 1 3.9790 2.1782 -0.0571 34 1 5.4963 -0.3257 -2.3928 35 1 5.9339 0.7890 -1.0759 36 1 8.3713 -1.9541 -0.7662 37 1 4.5909 2.2045 -2.5378 38 1 2.8225 2.1467 -2.3436 39 1 3.6127 2.4736 -4.9673 40 1 4.1767 -1.0220 -5.4327 41 1 2.9889 -1.0401 -9.5302 42 1 2.3354 1.3259 -9.3573 43 1 3.3224 3.5667 -7.4421 44 1 1.6536 3.1315 -7.8826 45 1 2.1479 3.1453 -6.1727 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610391556.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:35 Heat of formation + Delta-G solvation = -68.528261 kcal Electronic energy + Delta-G solvation = -27613.715425 eV Core-core repulsion = 23656.824534 eV Total energy + Delta-G solvation = -3956.890891 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.77214 -39.91535 -38.91998 -37.64633 -37.35894 -35.75523 -34.67697 -33.33911 -31.61223 -30.86690 -29.65907 -27.75878 -27.24766 -26.51879 -24.31561 -24.01117 -22.52297 -21.96850 -21.15632 -19.01558 -18.54229 -18.21485 -17.39448 -17.14815 -16.83904 -16.52944 -16.41523 -16.10296 -15.96252 -15.48747 -15.25336 -15.13892 -14.76904 -14.68675 -14.44487 -14.09191 -13.80692 -13.76704 -13.48584 -13.36089 -13.10758 -12.86620 -12.62276 -12.61173 -12.50682 -12.47851 -12.37378 -12.28587 -12.01544 -11.93787 -11.58564 -11.38126 -11.25039 -10.61395 -10.56120 -10.39595 -9.65423 -9.05543 -8.90738 -8.18376 -6.24714 0.09852 0.27669 1.14968 1.36428 1.40269 1.50349 1.64952 1.94485 2.41197 2.66530 3.08176 3.14812 3.30089 3.71096 3.89972 3.95395 4.11375 4.15251 4.29554 4.30580 4.35601 4.40038 4.43330 4.56768 4.60871 4.62557 4.72960 4.73760 4.85937 4.89629 4.89837 5.04561 5.09976 5.20283 5.23723 5.31191 5.34446 5.39804 5.44987 5.68076 5.92942 6.08475 6.33227 6.40082 6.52846 6.71052 6.90571 7.23794 7.43014 8.92827 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.008833 B = 0.003772 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3169.136842 B = 7422.132709 C = 9186.355859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.410 6.410 3 C 0.074 3.926 4 C 0.058 3.942 5 N -0.527 5.527 6 C 0.219 3.781 7 C -0.510 4.510 8 H 0.056 0.944 9 C 0.001 3.999 10 N -0.935 5.935 11 Si 0.961 3.039 12 H -0.283 1.283 13 H -0.277 1.277 14 H -0.263 1.263 15 C 0.038 3.962 16 C 0.503 3.497 17 O -0.528 6.528 18 N -0.657 5.657 19 C 0.152 3.848 20 C -0.164 4.164 21 C -0.036 4.036 22 Cl -0.085 7.085 23 C -0.131 4.131 24 C -0.081 4.081 25 C -0.111 4.111 26 C -0.113 4.113 27 H 0.079 0.921 28 H 0.057 0.943 29 H 0.043 0.957 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.067 0.933 34 H -0.004 1.004 35 H -0.030 1.030 36 H 0.262 0.738 37 H 0.076 0.924 38 H 0.135 0.865 39 H 0.429 0.571 40 H 0.125 0.875 41 H 0.154 0.846 42 H 0.176 0.824 43 H 0.090 0.910 44 H 0.094 0.906 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.327 15.084 -13.123 24.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.329 6.329 3 C -0.003 4.003 4 C -0.070 4.070 5 N -0.252 5.252 6 C 0.093 3.907 7 C -0.548 4.548 8 H 0.074 0.926 9 C -0.196 4.196 10 N -0.577 5.577 11 Si 0.787 3.213 12 H -0.209 1.209 13 H -0.202 1.202 14 H -0.187 1.187 15 C -0.094 4.094 16 C 0.291 3.709 17 O -0.402 6.402 18 N -0.305 5.305 19 C 0.056 3.944 20 C -0.185 4.185 21 C -0.063 4.063 22 Cl -0.056 7.056 23 C -0.150 4.150 24 C -0.099 4.099 25 C -0.114 4.114 26 C -0.169 4.169 27 H 0.097 0.903 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.014 0.986 35 H -0.013 1.013 36 H 0.071 0.929 37 H 0.094 0.906 38 H 0.153 0.847 39 H 0.269 0.731 40 H 0.142 0.858 41 H 0.171 0.829 42 H 0.194 0.806 43 H 0.109 0.891 44 H 0.113 0.887 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.355 13.509 -13.110 23.673 hybrid contribution 1.188 -0.409 0.820 1.500 sum -13.167 13.100 -12.290 22.271 Atomic orbital electron populations 1.22819 0.80601 1.02863 1.00476 1.88094 1.20447 1.28977 1.95377 1.22657 0.92442 0.84449 1.00732 1.22139 0.94952 0.98218 0.91657 1.61532 1.28504 1.32509 1.02661 1.19279 0.83226 0.92984 0.95257 1.21421 0.95258 1.14817 1.23339 0.92601 1.25812 0.95276 1.00252 0.98252 1.70076 1.01190 1.42564 1.43848 0.85502 0.77532 0.79178 0.79133 1.20888 1.20195 1.18734 1.22057 1.04487 0.93963 0.88849 1.21464 0.74975 0.88160 0.86285 1.90687 1.46545 1.16149 1.86835 1.43432 1.72178 1.11461 1.03413 1.17681 0.98612 0.91400 0.86730 1.21525 1.03205 0.95790 0.97975 1.20931 1.03711 0.85868 0.95809 1.98354 1.91094 1.17908 1.98239 1.21298 1.00394 0.95796 0.97506 1.21236 0.98230 0.92710 0.97711 1.20125 1.00104 0.99116 0.92027 1.20852 1.03203 0.88838 1.04004 0.90271 0.92418 0.93840 0.90930 0.92123 0.91782 0.91543 0.98593 1.01279 0.92946 0.90637 0.84704 0.73135 0.85779 0.82859 0.80642 0.89134 0.88690 0.91053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 11.01 113.37 1.25 1.98 16 2 O -0.41 -14.89 10.63 -148.98 -1.58 -16.47 16 3 C 0.07 2.13 6.11 71.98 0.44 2.57 16 4 C 0.06 2.11 5.18 86.30 0.45 2.55 16 5 N -0.53 -22.95 3.89 -905.38 -3.52 -26.47 16 6 C 0.22 12.13 4.36 85.55 0.37 12.50 16 7 C -0.51 -31.04 8.23 25.60 0.21 -30.83 16 8 H 0.06 3.46 7.31 -2.91 -0.02 3.44 16 9 C 0.00 0.08 5.46 84.66 0.46 0.54 16 10 N -0.94 -59.38 13.29 21.45 0.28 -59.09 16 11 Si 0.96 47.96 29.54 68.60 2.03 49.98 16 12 H -0.28 -14.12 7.11 99.48 0.71 -13.42 16 13 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 14 H -0.26 -12.57 7.11 99.48 0.71 -11.87 16 15 C 0.04 1.21 5.30 85.56 0.45 1.66 16 16 C 0.50 18.22 7.29 87.66 0.64 18.86 16 17 O -0.53 -25.71 12.30 -3.04 -0.04 -25.75 16 18 N -0.66 -17.19 5.02 -303.52 -1.52 -18.71 16 19 C 0.15 4.28 6.46 38.15 0.25 4.53 16 20 C -0.16 -5.88 8.59 22.41 0.19 -5.69 16 21 C -0.04 -1.11 6.32 22.31 0.14 -0.97 16 22 Cl -0.08 -2.70 28.95 -2.72 -0.08 -2.77 16 23 C -0.13 -2.85 9.83 22.31 0.22 -2.63 16 24 C -0.08 -1.35 9.70 22.25 0.22 -1.14 16 25 C -0.11 -2.11 5.90 -19.74 -0.12 -2.22 16 26 C -0.11 -1.11 9.45 71.24 0.67 -0.44 16 27 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 28 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 31 H 0.06 1.43 6.69 -2.39 -0.02 1.42 16 32 H 0.06 2.80 6.58 -2.39 -0.02 2.79 16 33 H 0.07 1.99 8.00 -2.38 -0.02 1.97 16 34 H 0.00 -0.26 6.85 -2.39 -0.02 -0.27 16 35 H -0.03 -1.74 8.12 -2.39 -0.02 -1.76 16 36 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 37 H 0.08 2.16 8.00 -2.39 -0.02 2.15 16 38 H 0.14 3.05 6.47 -2.39 -0.02 3.03 16 39 H 0.43 7.05 7.32 -92.71 -0.68 6.38 16 40 H 0.12 5.73 5.40 -2.91 -0.02 5.71 16 41 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 42 H 0.18 1.43 8.06 -2.91 -0.02 1.41 16 43 H 0.09 0.64 8.14 -2.39 -0.02 0.63 16 44 H 0.09 0.57 8.09 -2.39 -0.02 0.55 16 45 H 0.07 0.65 6.95 -2.39 -0.02 0.63 16 Total: -1.00 -86.29 385.01 1.75 -84.54 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: 0.33 Total: 13.47 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: 5.84 Total: 1.28 kcal Atomic # 7 Polarization: -99.52 SS G_CDS: -4.76 Total: -104.28 kcal Atomic # 8 Polarization: -40.60 SS G_CDS: -1.62 Total: -42.22 kcal Atomic # 14 Polarization: 47.96 SS G_CDS: 2.03 Total: 49.98 kcal Atomic # 17 Polarization: -2.70 SS G_CDS: -0.08 Total: -2.77 kcal Total: -86.29 1.75 -84.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610391556.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.011 kcal (2) G-P(sol) polarization free energy of solvation -86.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds