Wall clock time and date at job start Sat Apr 11 2020 05:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38130 * 120.04234 * 2 1 4 4 C 1.50706 * 119.96052 * 0.02562 * 3 2 1 5 5 S 1.81402 * 109.46887 * 269.72390 * 4 3 2 6 6 C 1.81408 * 101.92108 * 180.02562 * 5 4 3 7 7 O 1.42104 * 108.57804 * 294.48470 * 5 4 3 8 8 O 1.42095 * 108.58059 * 65.51125 * 5 4 3 9 9 C 1.38257 * 120.07258 * 179.72481 * 3 2 1 10 10 C 1.38300 * 120.14318 * 0.27348 * 9 3 2 11 11 C 1.38099 * 120.06685 * 359.97438 * 10 9 3 12 12 C 1.38854 * 120.03310 * 180.23050 * 2 1 3 13 13 N 1.39944 * 120.06423 * 0.02562 * 12 2 1 14 14 C 1.34779 * 119.99675 * 205.04024 * 13 12 2 15 15 O 1.21593 * 119.99861 * 5.61016 * 14 13 12 16 16 N 1.34779 * 120.00074 * 185.61670 * 14 13 12 17 17 C 1.46496 * 119.99837 * 359.97438 * 16 14 13 18 18 C 1.46504 * 120.00004 * 180.02562 * 16 14 13 19 19 C 1.50703 * 109.47393 * 89.99534 * 18 16 14 20 20 H 1.08004 * 119.99857 * 359.97438 * 19 18 16 21 21 C 1.37874 * 120.00001 * 180.02562 * 19 18 16 22 22 N 1.31516 * 119.99768 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99848 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47191 * 59.99702 * 23 21 19 25 25 H 1.48500 * 109.46855 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.46862 * 299.99221 * 23 21 19 27 27 H 1.09000 * 109.47080 * 89.99383 * 1 2 3 28 28 H 1.08992 * 109.47499 * 210.00102 * 1 2 3 29 29 H 1.09004 * 109.46979 * 330.00372 * 1 2 3 30 30 H 1.08995 * 109.47174 * 149.72712 * 4 3 2 31 31 H 1.08997 * 109.47378 * 29.71952 * 4 3 2 32 32 H 1.09001 * 109.46996 * 60.00055 * 6 5 4 33 33 H 1.08994 * 109.46720 * 180.02562 * 6 5 4 34 34 H 1.08997 * 109.46680 * 299.99495 * 6 5 4 35 35 H 1.08006 * 119.92650 * 180.25332 * 9 3 2 36 36 H 1.07998 * 119.96737 * 179.97438 * 10 9 3 37 37 H 1.07993 * 120.03438 * 179.97438 * 11 10 9 38 38 H 0.97003 * 120.00761 * 25.04422 * 13 12 2 39 39 H 1.09002 * 109.47060 * 90.01083 * 17 16 14 40 40 H 1.09005 * 109.47245 * 210.00334 * 17 16 14 41 41 H 1.08994 * 109.47606 * 330.00580 * 17 16 14 42 42 H 1.08997 * 109.47139 * 209.99546 * 18 16 14 43 43 H 1.09000 * 109.46970 * 329.99608 * 18 16 14 44 44 H 0.97009 * 119.99565 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1957 0.0000 4 6 1.4451 2.5009 0.0006 5 16 1.1493 3.0290 -1.7095 6 6 0.2500 4.5863 -1.4705 7 8 2.4009 3.3184 -2.3169 8 8 0.2778 2.0927 -2.3282 9 6 3.5811 1.1965 0.0057 10 6 4.2762 0.0009 0.0058 11 6 3.5908 -1.1980 0.0006 12 6 2.2020 -1.2021 -0.0048 13 7 1.5043 -2.4152 -0.0103 14 6 2.0850 -3.5287 0.4793 15 8 3.1730 -3.4604 1.0179 16 7 1.4597 -4.7178 0.3717 17 6 0.1487 -4.7999 -0.2768 18 6 2.0906 -5.9280 0.9044 19 6 1.6726 -6.1226 2.3391 20 1 1.0042 -5.4153 2.8076 21 6 2.1444 -7.2030 3.0541 22 7 2.9587 -8.0639 2.4838 23 14 1.6257 -7.4446 4.8323 24 1 0.1490 -7.5850 4.9025 25 1 2.2654 -8.6712 5.3721 26 1 2.0501 -6.2700 5.6356 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3633 0.8901 0.5138 30 1 2.0322 3.2592 0.5186 31 1 0.4907 2.3693 0.5104 32 1 0.8727 5.2830 -0.9093 33 1 0.0058 5.0174 -2.4413 34 1 -0.6693 4.3937 -0.9173 35 1 4.1194 2.1328 0.0099 36 1 5.3562 0.0047 0.0099 37 1 4.1341 -2.1313 0.0003 38 1 0.6029 -2.4549 -0.3664 39 1 0.2817 -4.9795 -1.3437 40 1 -0.4226 -5.6187 0.1608 41 1 -0.3886 -3.8630 -0.1302 42 1 1.7784 -6.7900 0.3149 43 1 3.1745 -5.8256 0.8524 44 1 3.2903 -8.8243 2.9867 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610661185.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:42 Heat of formation + Delta-G solvation = -55.786516 kcal Electronic energy + Delta-G solvation = -27571.325804 eV Core-core repulsion = 23617.031143 eV Total energy + Delta-G solvation = -3954.294662 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.53737 -38.83003 -37.23580 -36.25300 -35.24355 -34.61307 -33.47839 -32.60851 -30.84394 -30.01852 -27.99536 -27.43199 -26.55356 -25.79783 -23.37042 -21.64096 -21.19941 -19.40617 -19.06250 -17.95317 -17.02581 -16.95236 -16.55382 -16.44525 -16.02822 -15.77807 -15.45547 -14.82664 -14.69777 -14.16378 -14.06013 -13.65020 -13.62590 -13.53195 -13.19624 -13.15698 -12.97495 -12.69386 -12.51480 -12.34683 -12.24864 -12.19807 -12.04002 -11.90166 -11.47696 -11.43548 -11.28761 -11.18027 -10.95170 -10.91597 -10.58544 -10.18672 -10.13078 -9.65665 -9.26340 -8.53625 -8.44554 -7.93521 -7.56890 -6.05630 -4.10508 -0.43249 1.40820 1.47183 2.42224 3.11865 3.31028 3.32782 3.35614 3.39178 3.61786 3.64141 4.03943 4.19450 4.27281 4.35627 4.37707 4.49764 4.64692 4.86611 4.95321 5.10101 5.18651 5.24070 5.28421 5.44018 5.50378 5.59840 5.67941 5.73733 5.82886 5.88031 6.07274 6.13587 6.37306 6.44178 6.61611 6.74092 6.81354 7.23931 7.31816 7.46196 7.62879 7.91606 8.20642 8.51677 8.89407 9.17161 9.54696 11.02227 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.023132 B = 0.002502 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.175404 B =11189.738297 C =11422.801912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.110 4.110 3 C -0.080 4.080 4 C -0.559 4.559 5 S 2.413 3.587 6 C -0.663 4.663 7 O -0.933 6.933 8 O -0.930 6.930 9 C -0.128 4.128 10 C -0.102 4.102 11 C -0.116 4.116 12 C 0.186 3.814 13 N -0.691 5.691 14 C 0.697 3.303 15 O -0.565 6.565 16 N -0.610 5.610 17 C 0.083 3.917 18 C 0.259 3.741 19 C -0.528 4.528 20 H 0.056 0.944 21 C 0.062 3.938 22 N -0.894 5.894 23 Si 0.899 3.101 24 H -0.277 1.277 25 H -0.286 1.286 26 H -0.276 1.276 27 H 0.088 0.912 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.140 0.860 31 H 0.142 0.858 32 H 0.127 0.873 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.125 0.875 36 H 0.128 0.872 37 H 0.155 0.845 38 H 0.403 0.597 39 H 0.048 0.952 40 H 0.080 0.920 41 H 0.049 0.951 42 H 0.036 0.964 43 H 0.046 0.954 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.486 24.529 -8.009 26.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.114 4.114 3 C -0.082 4.082 4 C -0.686 4.686 5 S 2.595 3.405 6 C -0.811 4.811 7 O -0.931 6.931 8 O -0.927 6.927 9 C -0.148 4.148 10 C -0.120 4.120 11 C -0.138 4.138 12 C 0.089 3.911 13 N -0.339 5.339 14 C 0.398 3.602 15 O -0.442 6.442 16 N -0.345 5.345 17 C -0.062 4.062 18 C 0.140 3.860 19 C -0.567 4.567 20 H 0.074 0.926 21 C -0.140 4.140 22 N -0.533 5.533 23 Si 0.727 3.273 24 H -0.203 1.203 25 H -0.211 1.211 26 H -0.202 1.202 27 H 0.107 0.893 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.158 0.842 31 H 0.159 0.841 32 H 0.146 0.854 33 H 0.147 0.853 34 H 0.146 0.854 35 H 0.143 0.857 36 H 0.146 0.854 37 H 0.173 0.827 38 H 0.241 0.759 39 H 0.066 0.934 40 H 0.099 0.901 41 H 0.067 0.933 42 H 0.054 0.946 43 H 0.064 0.936 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.412 23.847 -8.385 26.079 hybrid contribution -1.098 0.268 1.753 2.085 sum -7.510 24.115 -6.632 26.114 Atomic orbital electron populations 1.20936 0.91016 1.02827 1.03535 1.19335 0.95994 0.91115 1.04987 1.18280 0.93256 0.90458 1.06188 1.29312 1.10031 1.04938 1.24361 1.08334 0.76306 0.77457 0.78368 1.30354 1.15362 1.23277 1.12118 1.93600 1.41619 1.84743 1.73098 1.93590 1.67099 1.59319 1.72694 1.20944 0.92733 0.98751 1.02420 1.21030 1.00103 0.91551 0.99342 1.21701 0.92740 1.00291 0.99022 1.17348 0.91406 0.84053 0.98290 1.43048 1.18982 1.06718 1.65155 1.15930 0.84500 0.80213 0.79509 1.90856 1.20771 1.84388 1.48139 1.47542 1.19521 1.07625 1.59855 1.21617 0.85654 1.01892 0.97018 1.19272 0.94619 0.78646 0.93440 1.21403 1.29088 1.09256 0.96968 0.92570 1.24924 0.94912 0.95728 0.98485 1.69922 1.32433 1.13832 1.37145 0.86549 0.78588 0.77519 0.84692 1.20293 1.21149 1.20202 0.89330 0.91407 0.91394 0.84198 0.84051 0.85418 0.85318 0.85363 0.85669 0.85369 0.82719 0.75934 0.93397 0.90146 0.93252 0.94637 0.93585 0.92616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.32 8.76 36.01 0.32 -1.01 16 2 C -0.11 -1.47 5.90 -104.43 -0.62 -2.09 16 3 C -0.08 -0.94 5.14 -104.65 -0.54 -1.48 16 4 C -0.56 -3.80 5.53 36.01 0.20 -3.61 16 5 S 2.41 18.42 5.34 -107.50 -0.57 17.84 16 6 C -0.66 -2.15 10.62 101.05 1.07 -1.08 16 7 O -0.93 -10.76 18.10 -57.83 -1.05 -11.81 16 8 O -0.93 -10.22 17.14 -57.83 -0.99 -11.21 16 9 C -0.13 -1.58 9.70 -39.55 -0.38 -1.96 16 10 C -0.10 -1.42 10.04 -39.61 -0.40 -1.82 16 11 C -0.12 -1.98 8.72 -39.39 -0.34 -2.32 16 12 C 0.19 3.04 6.41 -83.69 -0.54 2.51 16 13 N -0.69 -11.53 4.85 -14.22 -0.07 -11.60 16 14 C 0.70 14.85 8.08 -86.91 -0.70 14.15 16 15 O -0.57 -14.21 13.09 5.28 0.07 -14.15 16 16 N -0.61 -12.92 2.86 -188.74 -0.54 -13.46 16 17 C 0.08 1.28 10.25 59.84 0.61 1.89 16 18 C 0.26 6.73 5.16 -5.19 -0.03 6.70 16 19 C -0.53 -14.91 9.39 -34.44 -0.32 -15.23 16 20 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 21 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 22 N -0.89 -26.43 13.29 55.43 0.74 -25.70 16 23 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 27 H 0.09 0.90 7.46 -51.93 -0.39 0.51 16 28 H 0.07 0.70 7.00 -51.93 -0.36 0.34 16 29 H 0.07 0.52 5.94 -51.93 -0.31 0.21 16 30 H 0.14 0.53 8.08 -51.93 -0.42 0.11 16 31 H 0.14 0.62 5.93 -51.93 -0.31 0.31 16 32 H 0.13 0.17 8.14 -51.92 -0.42 -0.25 16 33 H 0.13 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.13 0.17 8.14 -51.93 -0.42 -0.25 16 35 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16 36 H 0.13 1.50 8.06 -52.49 -0.42 1.07 16 37 H 0.16 2.99 5.79 -52.49 -0.30 2.69 16 38 H 0.40 5.44 5.11 -40.82 -0.21 5.23 16 39 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.08 1.27 8.07 -51.93 -0.42 0.85 16 41 H 0.05 0.61 6.29 -51.93 -0.33 0.28 16 42 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 43 H 0.05 1.34 7.42 -51.93 -0.39 0.96 16 44 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 374.64 15.07 5.65 5.65 Total: -1.00 -38.98 374.64 -9.48 -48.47 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -5.93 Total: 2.82 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: -1.76 Total: -3.68 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: 0.13 Total: -50.75 kcal Atomic # 8 Polarization: -35.19 SS G_CDS: -1.97 Total: -37.16 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: 18.42 SS G_CDS: -0.57 Total: 17.84 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -38.98 -9.48 -48.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610661185.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.318 kcal (2) G-P(sol) polarization free energy of solvation -38.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds