Wall clock time and date at job start Sat Apr 11 2020 05:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38130 * 120.04234 * 2 1 4 4 C 1.50706 * 119.96052 * 0.02562 * 3 2 1 5 5 S 1.81402 * 109.46887 * 269.72390 * 4 3 2 6 6 C 1.81408 * 101.92108 * 180.02562 * 5 4 3 7 7 O 1.42104 * 108.57804 * 294.48470 * 5 4 3 8 8 O 1.42095 * 108.58059 * 65.51125 * 5 4 3 9 9 C 1.38257 * 120.07258 * 179.72481 * 3 2 1 10 10 C 1.38300 * 120.14318 * 0.27348 * 9 3 2 11 11 C 1.38099 * 120.06685 * 359.97438 * 10 9 3 12 12 C 1.38854 * 120.03310 * 180.23050 * 2 1 3 13 13 N 1.39944 * 120.06423 * 0.02562 * 12 2 1 14 14 C 1.34779 * 119.99675 * 205.04024 * 13 12 2 15 15 O 1.21593 * 119.99861 * 5.61016 * 14 13 12 16 16 N 1.34779 * 120.00074 * 185.61670 * 14 13 12 17 17 C 1.46496 * 119.99837 * 359.97438 * 16 14 13 18 18 C 1.46504 * 120.00004 * 180.02562 * 16 14 13 19 19 C 1.50703 * 109.47393 * 89.99534 * 18 16 14 20 20 H 1.08004 * 119.99857 * 359.97438 * 19 18 16 21 21 C 1.37874 * 120.00001 * 180.02562 * 19 18 16 22 22 N 1.31516 * 119.99768 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99848 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47191 * 59.99702 * 23 21 19 25 25 H 1.48500 * 109.46855 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.46862 * 299.99221 * 23 21 19 27 27 H 1.09000 * 109.47080 * 89.99383 * 1 2 3 28 28 H 1.08992 * 109.47499 * 210.00102 * 1 2 3 29 29 H 1.09004 * 109.46979 * 330.00372 * 1 2 3 30 30 H 1.08995 * 109.47174 * 149.72712 * 4 3 2 31 31 H 1.08997 * 109.47378 * 29.71952 * 4 3 2 32 32 H 1.09001 * 109.46996 * 60.00055 * 6 5 4 33 33 H 1.08994 * 109.46720 * 180.02562 * 6 5 4 34 34 H 1.08997 * 109.46680 * 299.99495 * 6 5 4 35 35 H 1.08006 * 119.92650 * 180.25332 * 9 3 2 36 36 H 1.07998 * 119.96737 * 179.97438 * 10 9 3 37 37 H 1.07993 * 120.03438 * 179.97438 * 11 10 9 38 38 H 0.97003 * 120.00761 * 25.04422 * 13 12 2 39 39 H 1.09002 * 109.47060 * 90.01083 * 17 16 14 40 40 H 1.09005 * 109.47245 * 210.00334 * 17 16 14 41 41 H 1.08994 * 109.47606 * 330.00580 * 17 16 14 42 42 H 1.08997 * 109.47139 * 209.99546 * 18 16 14 43 43 H 1.09000 * 109.46970 * 329.99608 * 18 16 14 44 44 H 0.97009 * 119.99565 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1957 0.0000 4 6 1.4451 2.5009 0.0006 5 16 1.1493 3.0290 -1.7095 6 6 0.2500 4.5863 -1.4705 7 8 2.4009 3.3184 -2.3169 8 8 0.2778 2.0927 -2.3282 9 6 3.5811 1.1965 0.0057 10 6 4.2762 0.0009 0.0058 11 6 3.5908 -1.1980 0.0006 12 6 2.2020 -1.2021 -0.0048 13 7 1.5043 -2.4152 -0.0103 14 6 2.0850 -3.5287 0.4793 15 8 3.1730 -3.4604 1.0179 16 7 1.4597 -4.7178 0.3717 17 6 0.1487 -4.7999 -0.2768 18 6 2.0906 -5.9280 0.9044 19 6 1.6726 -6.1226 2.3391 20 1 1.0042 -5.4153 2.8076 21 6 2.1444 -7.2030 3.0541 22 7 2.9587 -8.0639 2.4838 23 14 1.6257 -7.4446 4.8323 24 1 0.1490 -7.5850 4.9025 25 1 2.2654 -8.6712 5.3721 26 1 2.0501 -6.2700 5.6356 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3633 0.8901 0.5138 30 1 2.0322 3.2592 0.5186 31 1 0.4907 2.3693 0.5104 32 1 0.8727 5.2830 -0.9093 33 1 0.0058 5.0174 -2.4413 34 1 -0.6693 4.3937 -0.9173 35 1 4.1194 2.1328 0.0099 36 1 5.3562 0.0047 0.0099 37 1 4.1341 -2.1313 0.0003 38 1 0.6029 -2.4549 -0.3664 39 1 0.2817 -4.9795 -1.3437 40 1 -0.4226 -5.6187 0.1608 41 1 -0.3886 -3.8630 -0.1302 42 1 1.7784 -6.7900 0.3149 43 1 3.1745 -5.8256 0.8524 44 1 3.2903 -8.8243 2.9867 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610661185.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:41 Heat of formation + Delta-G solvation = -85.123195 kcal Electronic energy + Delta-G solvation = -27572.597938 eV Core-core repulsion = 23617.031143 eV Total energy + Delta-G solvation = -3955.566795 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.89693 -40.13408 -37.90145 -36.94532 -36.83243 -36.10594 -34.72167 -34.40133 -31.92492 -30.37394 -29.71079 -28.49152 -27.49905 -27.33281 -25.21826 -23.00450 -22.27494 -20.79997 -19.71870 -19.36224 -18.68908 -18.20021 -17.56145 -17.18441 -17.14139 -16.84555 -16.58199 -16.47848 -16.05457 -15.72746 -15.06877 -14.76050 -14.65451 -14.38022 -14.09601 -13.92329 -13.87319 -13.83718 -13.72531 -13.47087 -13.31334 -13.20224 -13.17729 -12.94638 -12.84844 -12.79843 -12.57403 -12.38118 -12.27819 -12.17435 -12.02711 -11.78083 -11.63775 -11.35243 -10.91364 -10.64521 -9.58568 -9.54661 -8.91512 -8.22339 -6.37516 -0.96843 0.33562 0.38990 1.36057 1.40546 1.47578 1.65578 1.94806 2.10856 2.38266 2.74818 2.87441 2.99157 3.07498 3.17369 3.50340 3.82883 3.94444 4.10198 4.17819 4.20323 4.25988 4.35623 4.43577 4.56008 4.59975 4.64404 4.72513 4.79067 4.83985 4.93799 4.95759 5.05023 5.17420 5.26161 5.31340 5.41127 5.50675 5.52336 5.58957 5.76566 6.03545 6.04241 6.06829 6.70311 6.98048 7.29023 7.55866 8.84071 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.023132 B = 0.002502 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.175404 B =11189.738297 C =11422.801912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.111 4.111 3 C -0.081 4.081 4 C -0.559 4.559 5 S 2.406 3.594 6 C -0.635 4.635 7 O -0.984 6.984 8 O -0.974 6.974 9 C -0.128 4.128 10 C -0.112 4.112 11 C -0.151 4.151 12 C 0.152 3.848 13 N -0.672 5.672 14 C 0.692 3.308 15 O -0.615 6.615 16 N -0.619 5.619 17 C 0.076 3.924 18 C 0.275 3.725 19 C -0.544 4.544 20 H 0.052 0.948 21 C 0.008 3.992 22 N -0.927 5.927 23 Si 0.968 3.032 24 H -0.259 1.259 25 H -0.278 1.278 26 H -0.280 1.280 27 H 0.093 0.907 28 H 0.066 0.934 29 H 0.102 0.898 30 H 0.179 0.821 31 H 0.174 0.826 32 H 0.156 0.844 33 H 0.135 0.865 34 H 0.158 0.842 35 H 0.157 0.843 36 H 0.141 0.859 37 H 0.117 0.883 38 H 0.418 0.582 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.031 0.969 43 H 0.000 1.000 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.518 28.396 -6.981 31.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.115 4.115 3 C -0.083 4.083 4 C -0.686 4.686 5 S 2.594 3.406 6 C -0.788 4.788 7 O -0.982 6.982 8 O -0.971 6.971 9 C -0.148 4.148 10 C -0.130 4.130 11 C -0.172 4.172 12 C 0.056 3.944 13 N -0.322 5.322 14 C 0.394 3.606 15 O -0.495 6.495 16 N -0.353 5.353 17 C -0.066 4.066 18 C 0.154 3.846 19 C -0.582 4.582 20 H 0.070 0.930 21 C -0.191 4.191 22 N -0.567 5.567 23 Si 0.792 3.208 24 H -0.184 1.184 25 H -0.203 1.203 26 H -0.205 1.205 27 H 0.111 0.889 28 H 0.085 0.915 29 H 0.121 0.879 30 H 0.196 0.804 31 H 0.191 0.809 32 H 0.175 0.825 33 H 0.154 0.846 34 H 0.176 0.824 35 H 0.175 0.825 36 H 0.159 0.841 37 H 0.135 0.865 38 H 0.259 0.741 39 H 0.089 0.911 40 H 0.097 0.903 41 H 0.102 0.898 42 H 0.049 0.951 43 H 0.018 0.982 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.478 27.711 -7.416 30.212 hybrid contribution -0.162 -0.725 1.371 1.559 sum -9.640 26.986 -6.045 29.287 Atomic orbital electron populations 1.21077 0.88689 1.04558 1.04334 1.19731 0.97763 0.90378 1.03609 1.18827 0.93494 0.92322 1.03651 1.29408 1.11675 1.02982 1.24527 1.08086 0.75490 0.78806 0.78171 1.30112 1.15988 1.19055 1.13677 1.93545 1.44324 1.85746 1.74547 1.93540 1.67458 1.62138 1.73976 1.21389 0.93565 0.99040 1.00819 1.21240 1.01010 0.91428 0.99332 1.21538 0.93629 0.99981 1.02097 1.17647 0.91407 0.84743 1.00586 1.42666 1.19338 1.05691 1.64460 1.16108 0.84012 0.81144 0.79376 1.90825 1.23012 1.85329 1.50330 1.47404 1.21401 1.06311 1.60198 1.21919 0.83060 1.03803 0.97810 1.18731 0.92299 0.80466 0.93114 1.21662 1.29169 1.09322 0.98069 0.92996 1.25848 0.94771 0.95355 1.03118 1.70045 1.33335 1.14346 1.38978 0.85464 0.79155 0.77341 0.78808 1.18359 1.20260 1.20541 0.88859 0.91523 0.87921 0.80368 0.80874 0.82538 0.84610 0.82354 0.82534 0.84096 0.86533 0.74143 0.91053 0.90336 0.89755 0.95097 0.98181 0.92341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.37 8.76 71.24 0.62 -1.74 16 2 C -0.11 -2.84 5.90 -19.74 -0.12 -2.95 16 3 C -0.08 -1.72 5.14 -19.88 -0.10 -1.83 16 4 C -0.56 -5.03 5.53 71.24 0.39 -4.63 16 5 S 2.41 29.20 5.34 -56.49 -0.30 28.90 16 6 C -0.64 -0.54 10.62 113.37 1.20 0.67 16 7 O -0.98 -21.12 18.10 -127.37 -2.30 -23.42 16 8 O -0.97 -19.49 17.14 -127.37 -2.18 -21.68 16 9 C -0.13 -2.99 9.70 22.29 0.22 -2.78 16 10 C -0.11 -3.26 10.04 22.25 0.22 -3.03 16 11 C -0.15 -5.57 8.72 22.39 0.20 -5.38 16 12 C 0.15 5.15 6.41 38.15 0.24 5.40 16 13 N -0.67 -23.15 4.85 -317.16 -1.54 -24.69 16 14 C 0.69 31.25 8.08 179.05 1.45 32.70 16 15 O -0.61 -33.65 13.09 -4.01 -0.05 -33.70 16 16 N -0.62 -27.31 2.86 -869.30 -2.48 -29.80 16 17 C 0.08 2.33 10.25 127.77 1.31 3.64 16 18 C 0.28 15.13 5.16 85.63 0.44 15.57 16 19 C -0.54 -31.71 9.39 25.60 0.24 -31.47 16 20 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 21 C 0.01 0.48 5.46 84.65 0.46 0.94 16 22 N -0.93 -56.50 13.29 21.45 0.28 -56.22 16 23 Si 0.97 45.27 29.54 68.60 2.03 47.30 16 24 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 25 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 26 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 27 H 0.09 1.66 7.46 -2.39 -0.02 1.64 16 28 H 0.07 1.23 7.00 -2.39 -0.02 1.21 16 29 H 0.10 1.10 5.94 -2.38 -0.01 1.08 16 30 H 0.18 0.27 8.08 -2.39 -0.02 0.25 16 31 H 0.17 0.45 5.93 -2.39 -0.01 0.44 16 32 H 0.16 -0.63 8.14 -2.39 -0.02 -0.65 16 33 H 0.14 0.13 8.14 -2.39 -0.02 0.11 16 34 H 0.16 -0.68 8.14 -2.39 -0.02 -0.70 16 35 H 0.16 2.58 8.06 -2.91 -0.02 2.55 16 36 H 0.14 3.51 8.06 -2.91 -0.02 3.48 16 37 H 0.12 5.13 5.79 -2.91 -0.02 5.12 16 38 H 0.42 11.14 5.11 -92.71 -0.47 10.66 16 39 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.08 2.44 8.07 -2.38 -0.02 2.42 16 41 H 0.08 1.95 6.29 -2.39 -0.02 1.93 16 42 H 0.03 1.70 8.07 -2.39 -0.02 1.68 16 43 H 0.00 0.00 7.42 -2.39 -0.02 -0.01 16 44 H 0.27 15.30 8.31 -92.70 -0.77 14.53 16 Total: -1.00 -93.31 374.64 0.79 -92.52 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: 0.56 Total: 15.70 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: 6.78 Total: 5.09 kcal Atomic # 7 Polarization: -106.97 SS G_CDS: -3.74 Total: -110.71 kcal Atomic # 8 Polarization: -74.26 SS G_CDS: -4.54 Total: -78.80 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Atomic # 16 Polarization: 29.20 SS G_CDS: -0.30 Total: 28.90 kcal Total: -93.31 0.79 -92.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610661185.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.395 kcal (2) G-P(sol) polarization free energy of solvation -93.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds