Wall clock time and date at job start Sat Apr 11 2020 05:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29394 * 124.70292 * 2 1 4 4 C 1.30913 * 117.46617 * 180.02562 * 3 2 1 5 5 C 1.50697 * 123.03448 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.47175 * 90.02711 * 5 4 3 7 7 C 1.53000 * 109.47118 * 175.00340 * 6 5 4 8 8 C 1.53007 * 109.46746 * 294.99553 * 6 5 4 9 9 C 1.36767 * 113.93251 * 359.97438 * 4 3 2 10 10 C 1.46502 * 126.17715 * 180.02562 * 9 4 3 11 11 O 1.21613 * 120.00143 * 359.94784 * 10 9 4 12 12 O 1.34872 * 119.99575 * 179.97438 * 10 9 4 13 13 C 1.45203 * 117.00071 * 180.02562 * 12 10 9 14 14 C 1.50693 * 109.47223 * 179.97438 * 13 12 10 15 15 O 1.21279 * 120.00467 * 359.97438 * 14 13 12 16 16 N 1.34776 * 119.99715 * 179.97438 * 14 13 12 17 17 C 1.46508 * 119.99900 * 179.97438 * 16 14 13 18 18 C 1.50697 * 109.46942 * 179.97438 * 17 16 14 19 19 H 1.08005 * 120.00226 * 359.97438 * 18 17 16 20 20 C 1.37882 * 120.00102 * 179.97438 * 18 17 16 21 21 N 1.31518 * 119.99535 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00229 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47039 * 60.00536 * 22 20 18 24 24 H 1.48500 * 109.47083 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47395 * 300.00380 * 22 20 18 26 26 S 1.70920 * 124.70986 * 179.97438 * 2 1 3 27 27 H 1.08998 * 109.46997 * 90.00095 * 1 2 3 28 28 H 1.09000 * 109.46633 * 210.00011 * 1 2 3 29 29 H 1.09003 * 109.46993 * 329.99423 * 1 2 3 30 30 H 1.09004 * 109.46961 * 210.02029 * 5 4 3 31 31 H 1.08996 * 109.47626 * 330.02703 * 5 4 3 32 32 H 1.08995 * 109.47692 * 54.99946 * 6 5 4 33 33 H 1.08995 * 109.47717 * 59.99804 * 7 6 5 34 34 H 1.09007 * 109.47235 * 179.97438 * 7 6 5 35 35 H 1.08999 * 109.46819 * 299.99102 * 7 6 5 36 36 H 1.09004 * 109.47184 * 179.97438 * 8 6 5 37 37 H 1.09000 * 109.47151 * 300.00156 * 8 6 5 38 38 H 1.08996 * 109.46731 * 60.00392 * 8 6 5 39 39 H 1.09010 * 109.46269 * 299.99777 * 13 12 10 40 40 H 1.08999 * 109.47231 * 59.98836 * 13 12 10 41 41 H 0.96999 * 120.00382 * 359.97438 * 16 14 13 42 42 H 1.08998 * 109.47024 * 299.99908 * 17 16 14 43 43 H 1.09002 * 109.47042 * 60.00170 * 17 16 14 44 44 H 0.96995 * 119.99705 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2437 1.0638 0.0000 4 6 3.5424 0.8989 -0.0005 5 6 4.5165 2.0487 -0.0011 6 6 4.8473 2.4376 1.4412 7 6 5.9288 3.5199 1.4422 8 6 3.5886 2.9739 2.1262 9 6 3.9353 -0.4112 -0.0004 10 6 5.3165 -0.8997 -0.0004 11 8 6.2410 -0.1097 -0.0014 12 8 5.5626 -2.2258 0.0002 13 6 6.9549 -2.6379 0.0008 14 6 7.0334 -4.1428 0.0020 15 8 6.0162 -4.8031 0.0029 16 7 8.2341 -4.7549 0.0022 17 6 8.3105 -6.2180 0.0040 18 6 9.7556 -6.6455 0.0032 19 1 10.5388 -5.9018 0.0011 20 6 10.0779 -7.9861 0.0052 21 7 9.1241 -8.8917 0.0072 22 14 11.8691 -8.5161 0.0035 23 1 12.5441 -7.9832 1.2141 24 1 11.9465 -9.9991 0.0054 25 1 12.5406 -7.9875 -1.2109 26 16 2.4803 -1.4050 0.0006 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3632 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 5.4301 1.7506 -0.5157 31 1 4.0720 2.9013 -0.5145 32 1 5.2091 1.5619 1.9799 33 1 5.5671 4.3957 0.9036 34 1 6.1642 3.7973 2.4698 35 1 6.8255 3.1378 0.9543 36 1 3.8241 3.2506 3.1539 37 1 3.2269 3.8497 1.5874 38 1 2.8182 2.2030 2.1254 39 1 7.4493 -2.2486 -0.8894 40 1 7.4489 -2.2478 0.8906 41 1 9.0478 -4.2268 0.0012 42 1 7.8168 -6.6064 0.8947 43 1 7.8159 -6.6087 -0.8853 44 1 9.3508 -9.8348 0.0089 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756544419.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:06 Heat of formation + Delta-G solvation = -97.934247 kcal Electronic energy + Delta-G solvation = -26428.764207 eV Core-core repulsion = 22472.641882 eV Total energy + Delta-G solvation = -3956.122324 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.94016 -40.00357 -38.68223 -36.61970 -36.10641 -34.28108 -32.76528 -32.43430 -29.91916 -29.00461 -28.02620 -27.30770 -26.56206 -23.54138 -23.04190 -22.24750 -20.44780 -20.01537 -19.65464 -18.53845 -17.55689 -17.11673 -16.74701 -16.40739 -15.57809 -15.51403 -15.25726 -15.09470 -14.81020 -14.58152 -14.29453 -14.14711 -13.82828 -13.20333 -13.13508 -13.08461 -12.81091 -12.76507 -12.54305 -12.44764 -12.05869 -12.01110 -11.81082 -11.76900 -11.17780 -11.15360 -11.05093 -10.93293 -10.86103 -10.76772 -10.58688 -10.36568 -10.02978 -9.80373 -9.47912 -9.22539 -9.02148 -8.80067 -8.02169 -6.21405 -4.29014 -0.17267 0.87830 1.33518 1.98617 2.28265 2.66085 3.13425 3.22983 3.27970 3.29322 3.59137 3.94077 4.31203 4.43100 4.52168 4.70689 4.74954 4.79845 4.93258 5.00048 5.02652 5.11229 5.14447 5.18486 5.29593 5.36514 5.43848 5.47613 5.52474 5.57233 5.68553 5.70908 5.87540 5.97898 6.11134 6.17329 6.23869 7.19371 7.26717 7.28928 7.43119 7.49799 7.59667 7.89771 8.46353 8.68116 8.92684 9.37322 10.88677 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017371 B = 0.002180 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.496136 B =12838.306709 C =14207.720398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.049 3.951 3 N -0.477 5.477 4 C 0.171 3.829 5 C -0.055 4.055 6 C -0.084 4.084 7 C -0.143 4.143 8 C -0.145 4.145 9 C -0.300 4.300 10 C 0.546 3.454 11 O -0.492 6.492 12 O -0.326 6.326 13 C 0.051 3.949 14 C 0.500 3.500 15 O -0.533 6.533 16 N -0.706 5.706 17 C 0.252 3.748 18 C -0.546 4.546 19 H 0.064 0.936 20 C 0.064 3.936 21 N -0.885 5.885 22 Si 0.906 3.094 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.275 1.275 26 S 0.232 5.768 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.104 0.896 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.060 0.940 36 H 0.051 0.949 37 H 0.056 0.944 38 H 0.054 0.946 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.393 0.607 42 H 0.030 0.970 43 H 0.030 0.970 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.505 23.529 1.054 27.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.225 4.225 3 N -0.192 5.192 4 C 0.030 3.970 5 C -0.094 4.094 6 C -0.103 4.103 7 C -0.201 4.201 8 C -0.202 4.202 9 C -0.423 4.423 10 C 0.390 3.610 11 O -0.383 6.383 12 O -0.241 6.241 13 C -0.026 4.026 14 C 0.282 3.718 15 O -0.411 6.411 16 N -0.356 5.356 17 C 0.132 3.868 18 C -0.584 4.584 19 H 0.082 0.918 20 C -0.140 4.140 21 N -0.522 5.522 22 Si 0.733 3.267 23 H -0.200 1.200 24 H -0.210 1.210 25 H -0.200 1.200 26 S 0.492 5.508 27 H 0.110 0.890 28 H 0.104 0.896 29 H 0.111 0.889 30 H 0.122 0.878 31 H 0.101 0.899 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.226 0.774 42 H 0.048 0.952 43 H 0.048 0.952 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.541 22.343 1.052 27.237 hybrid contribution 2.084 0.498 -0.024 2.142 sum -13.457 22.841 1.028 26.531 Atomic orbital electron populations 1.20555 0.84559 1.04721 1.04401 1.27621 1.02546 0.92323 0.99977 1.66130 1.03964 1.31250 1.17885 1.20940 0.90019 0.92619 0.93388 1.20635 0.96747 0.93488 0.98580 1.20975 0.96009 0.98922 0.94391 1.21790 0.98421 0.98071 1.01801 1.21863 0.97288 1.01248 0.99826 1.24662 0.96025 0.97097 1.24495 1.19310 0.87421 0.81065 0.73242 1.90848 1.44708 1.56343 1.46355 1.86642 1.29963 1.23665 1.83806 1.22920 0.79681 0.95187 1.04842 1.19850 0.85175 0.87888 0.78853 1.90711 1.34570 1.66234 1.49550 1.46364 1.05982 1.10866 1.72370 1.19178 0.97470 0.72156 0.98038 1.21166 0.91188 0.92398 1.53692 0.91805 1.24954 0.98152 0.96286 0.94585 1.69962 1.32332 1.01337 1.48546 0.86442 0.83972 0.77575 0.78737 1.20017 1.21039 1.20023 1.84508 0.94457 1.08531 1.63345 0.88964 0.89557 0.88876 0.87777 0.89899 0.91134 0.92686 0.92586 0.92137 0.93038 0.92522 0.92644 0.88236 0.88244 0.77388 0.95237 0.95242 0.92297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.43 10.46 36.01 0.38 -0.05 16 2 C 0.05 0.44 7.37 -13.30 -0.10 0.35 16 3 N -0.48 -5.18 9.64 -7.47 -0.07 -5.26 16 4 C 0.17 2.01 5.36 -83.52 -0.45 1.56 16 5 C -0.05 -0.57 4.52 -27.88 -0.13 -0.70 16 6 C -0.08 -0.81 2.91 -90.61 -0.26 -1.08 16 7 C -0.14 -1.18 9.19 37.16 0.34 -0.84 16 8 C -0.14 -1.29 8.98 37.16 0.33 -0.96 16 9 C -0.30 -3.87 6.52 -36.79 -0.24 -4.10 16 10 C 0.55 7.93 7.92 34.06 0.27 8.20 16 11 O -0.49 -7.25 14.12 -19.35 -0.27 -7.53 16 12 O -0.33 -5.28 9.65 -47.65 -0.46 -5.74 16 13 C 0.05 0.77 5.96 36.00 0.21 0.99 16 14 C 0.50 9.90 7.91 -10.99 -0.09 9.82 16 15 O -0.53 -12.89 16.50 -14.10 -0.23 -13.13 16 16 N -0.71 -14.40 5.55 -61.47 -0.34 -14.74 16 17 C 0.25 6.52 5.43 -5.19 -0.03 6.49 16 18 C -0.55 -14.51 9.28 -34.44 -0.32 -14.83 16 19 H 0.06 1.57 7.60 -52.48 -0.40 1.17 16 20 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 21 N -0.88 -25.69 13.29 55.43 0.74 -24.95 16 22 Si 0.91 20.56 29.54 -169.99 -5.02 15.54 16 23 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 25 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 26 S 0.23 2.49 23.04 -107.50 -2.48 0.02 16 27 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.10 1.18 6.06 -51.93 -0.31 0.87 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.05 0.56 6.75 -51.93 -0.35 0.21 16 39 H 0.10 1.28 8.14 -51.92 -0.42 0.86 16 40 H 0.10 1.29 8.14 -51.93 -0.42 0.86 16 41 H 0.39 6.70 8.32 -40.82 -0.34 6.36 16 42 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 390.92 15.07 5.89 5.89 Total: -1.00 -33.16 390.92 -8.88 -42.03 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -6.46 Total: 1.37 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: -0.17 Total: 6.50 kcal Atomic # 7 Polarization: -45.27 SS G_CDS: 0.32 Total: -44.95 kcal Atomic # 8 Polarization: -25.43 SS G_CDS: -0.97 Total: -26.39 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 16 Polarization: 2.49 SS G_CDS: -2.48 Total: 0.02 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.16 -8.88 -42.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756544419.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.902 kcal (2) G-P(sol) polarization free energy of solvation -33.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds