Wall clock time and date at job start Sat Apr 11 2020 05:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29026 * 124.91748 * 2 1 4 4 C 1.31781 * 117.12356 * 179.97438 * 3 2 1 5 5 C 1.50702 * 122.74908 * 179.97438 * 4 3 2 6 6 C 1.50708 * 109.46867 * 90.02581 * 5 4 3 7 7 O 1.20819 * 120.00348 * 359.97438 * 6 5 4 8 8 O 1.34226 * 119.99421 * 180.02562 * 6 5 4 9 9 C 1.45202 * 116.99680 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.47500 * 29.99854 * 9 8 6 11 11 C 1.53001 * 109.46924 * 269.99688 * 9 8 6 12 12 C 1.50700 * 109.47200 * 149.99463 * 9 8 6 13 13 O 1.21287 * 120.00117 * 16.02987 * 12 9 8 14 14 N 1.34778 * 120.00411 * 196.02397 * 12 9 8 15 15 C 1.46500 * 119.99493 * 5.36761 * 14 12 9 16 16 C 1.46496 * 120.00473 * 185.36611 * 14 12 9 17 17 C 1.50703 * 109.46814 * 89.99954 * 16 14 12 18 18 H 1.08000 * 120.00202 * 0.02562 * 17 16 14 19 19 C 1.37879 * 119.99583 * 179.97438 * 17 16 14 20 20 N 1.31515 * 120.00367 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99866 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46988 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47278 * 120.00147 * 21 19 17 24 24 H 1.48499 * 109.47204 * 240.00459 * 21 19 17 25 25 C 1.33641 * 114.50367 * 0.22940 * 4 3 2 26 26 C 1.50697 * 126.04028 * 179.76765 * 25 4 3 27 27 S 1.70978 * 124.91367 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.46835 * 89.99902 * 1 2 3 29 29 H 1.08998 * 109.47038 * 210.00173 * 1 2 3 30 30 H 1.08994 * 109.46773 * 330.00092 * 1 2 3 31 31 H 1.08999 * 109.46846 * 210.02205 * 5 4 3 32 32 H 1.08997 * 109.46889 * 330.02921 * 5 4 3 33 33 H 1.08997 * 109.46971 * 66.14179 * 11 9 8 34 34 H 1.09008 * 109.47109 * 186.13743 * 11 9 8 35 35 H 1.08996 * 109.47083 * 306.13114 * 11 9 8 36 36 H 1.08998 * 109.47345 * 84.82437 * 15 14 12 37 37 H 1.09003 * 109.46954 * 204.82011 * 15 14 12 38 38 H 1.09000 * 109.47740 * 324.82272 * 15 14 12 39 39 H 1.08996 * 109.47277 * 210.00135 * 16 14 12 40 40 H 1.09004 * 109.46878 * 330.00360 * 16 14 12 41 41 H 0.97000 * 119.99890 * 180.02562 * 20 19 17 42 42 H 1.08995 * 109.47380 * 90.00608 * 26 25 4 43 43 H 1.09003 * 109.46968 * 210.00172 * 26 25 4 44 44 H 1.08997 * 109.47261 * 330.00290 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5512 0.8793 0.0005 5 6 4.5308 2.0245 0.0000 6 6 4.8573 2.4068 1.4208 7 8 4.3467 1.8108 2.3394 8 8 5.7148 3.4101 1.6655 9 6 5.9820 3.7238 3.0578 10 1 5.8849 2.8199 3.6592 11 6 4.9794 4.7714 3.5460 12 6 7.3813 4.2674 3.1906 13 8 7.9782 4.6524 2.2075 14 7 7.9695 4.3259 4.4019 15 6 7.2969 3.7540 5.5710 16 6 9.2813 4.9611 4.5494 17 6 9.0987 6.4272 4.8467 18 1 8.1050 6.8440 4.9191 19 6 10.2005 7.2363 5.0275 20 7 11.4106 6.7287 4.9399 21 14 9.9743 9.0534 5.3968 22 1 8.5247 9.3724 5.4431 23 1 10.5931 9.3728 6.7084 24 1 10.6252 9.8595 4.3330 25 6 3.9355 -0.4007 -0.0039 26 6 5.3575 -0.8995 -0.0094 27 16 2.4856 -1.4020 0.0006 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 5.4433 1.7218 -0.5137 32 1 4.0906 2.8789 -0.5141 33 1 3.9782 4.3406 3.5529 34 1 5.2460 5.0871 4.5548 35 1 4.9999 5.6328 2.8785 36 1 7.5143 2.6875 5.6297 37 1 7.6554 4.2481 6.4741 38 1 6.2208 3.9009 5.4792 39 1 9.8236 4.4890 5.3685 40 1 9.8469 4.8456 3.6248 41 1 12.1856 7.2979 5.0675 42 1 5.7034 -1.0225 1.0169 43 1 5.4042 -1.8583 -0.5258 44 1 5.9934 -0.1787 -0.5232 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767548578.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:17 Heat of formation + Delta-G solvation = -100.796268 kcal Electronic energy + Delta-G solvation = -27090.132124 eV Core-core repulsion = 23133.885693 eV Total energy + Delta-G solvation = -3956.246431 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.10169 -41.06051 -40.33258 -37.68566 -36.69781 -34.98110 -34.84225 -33.17645 -31.52776 -30.85211 -29.70299 -27.60538 -26.45828 -25.97163 -24.75646 -23.80697 -22.13748 -20.44231 -19.85330 -19.20989 -18.98437 -18.70221 -18.14073 -17.44080 -17.29919 -16.81451 -16.29228 -16.18753 -16.01924 -15.59129 -14.94057 -14.71130 -14.63758 -14.38828 -14.24909 -14.23487 -13.96218 -13.80891 -13.65543 -13.57607 -13.38355 -13.27347 -13.11167 -13.06683 -12.88224 -12.79593 -12.68613 -12.53455 -12.22279 -12.14199 -11.97908 -11.74281 -11.68941 -10.66530 -10.65518 -10.63987 -10.19075 -9.63100 -9.54028 -8.23877 -6.38525 -0.33118 0.32992 0.67226 1.02056 1.13056 1.37296 1.39585 1.50528 1.57499 1.80363 2.34106 2.45099 3.04745 3.06404 3.37170 3.52974 3.71567 3.78742 3.84386 3.94840 4.03671 4.23372 4.25972 4.40050 4.49025 4.53993 4.58072 4.61501 4.63713 4.67645 4.82871 4.85367 4.88818 4.93404 5.04028 5.08530 5.18348 5.20593 5.29843 5.50684 5.77213 6.02327 6.49087 6.61721 6.70429 6.72978 7.17649 7.34720 8.83888 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.026661 B = 0.002177 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.990312 B =12856.235081 C =13161.164306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.033 3.967 3 N -0.494 5.494 4 C 0.050 3.950 5 C -0.035 4.035 6 C 0.468 3.532 7 O -0.522 6.522 8 O -0.341 6.341 9 C 0.082 3.918 10 H 0.119 0.881 11 C -0.158 4.158 12 C 0.503 3.497 13 O -0.576 6.576 14 N -0.600 5.600 15 C 0.067 3.933 16 C 0.258 3.742 17 C -0.543 4.543 18 H 0.057 0.943 19 C 0.008 3.992 20 N -0.927 5.927 21 Si 0.969 3.031 22 H -0.265 1.265 23 H -0.270 1.270 24 H -0.282 1.282 25 C -0.215 4.215 26 C -0.084 4.084 27 S 0.158 5.842 28 H 0.103 0.897 29 H 0.101 0.899 30 H 0.085 0.915 31 H 0.147 0.853 32 H 0.135 0.865 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.031 0.969 40 H 0.001 0.999 41 H 0.268 0.732 42 H 0.075 0.925 43 H 0.093 0.907 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.934 -18.400 -8.522 29.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.245 4.245 3 N -0.209 5.209 4 C -0.081 4.081 5 C -0.075 4.075 6 C 0.312 3.688 7 O -0.411 6.411 8 O -0.257 6.257 9 C 0.024 3.976 10 H 0.137 0.863 11 C -0.216 4.216 12 C 0.290 3.710 13 O -0.455 6.455 14 N -0.332 5.332 15 C -0.075 4.075 16 C 0.138 3.862 17 C -0.582 4.582 18 H 0.076 0.924 19 C -0.192 4.192 20 N -0.567 5.567 21 Si 0.793 3.207 22 H -0.189 1.189 23 H -0.195 1.195 24 H -0.208 1.208 25 C -0.337 4.337 26 C -0.142 4.142 27 S 0.414 5.586 28 H 0.121 0.879 29 H 0.119 0.881 30 H 0.104 0.896 31 H 0.165 0.835 32 H 0.153 0.847 33 H 0.107 0.893 34 H 0.115 0.885 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.107 0.893 39 H 0.049 0.951 40 H 0.020 0.980 41 H 0.077 0.923 42 H 0.093 0.907 43 H 0.112 0.888 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -22.072 -18.905 -8.684 30.331 hybrid contribution 1.067 1.801 0.391 2.129 sum -21.005 -17.104 -8.293 28.329 Atomic orbital electron populations 1.20604 0.82849 1.05074 1.05156 1.27464 1.03142 0.90888 1.03001 1.66007 1.04662 1.33298 1.16967 1.19347 0.89950 0.93196 1.05629 1.19864 0.99963 0.97935 0.89742 1.24041 0.75119 0.76192 0.93466 1.90625 1.50366 1.52679 1.47400 1.86636 1.59386 1.50261 1.29439 1.22511 0.92584 1.01269 0.81266 0.86334 1.22151 0.98341 0.97934 1.03146 1.20571 0.87702 0.79315 0.83434 1.90657 1.66124 1.50092 1.38640 1.48064 1.20898 1.56553 1.07730 1.22142 0.98287 0.98916 0.88128 1.18881 0.79374 0.92132 0.95848 1.21719 0.93067 0.94581 1.48796 0.92438 1.25866 0.94641 1.03784 0.94861 1.70057 0.98539 1.37826 1.50290 0.85350 0.78559 0.78795 0.78003 1.18946 1.19465 1.20824 1.26022 1.02190 0.95732 1.09739 1.20438 0.87331 1.03008 1.03469 1.83656 0.95856 1.11044 1.68033 0.87888 0.88070 0.89647 0.83533 0.84746 0.89293 0.88537 0.91595 0.90912 0.90027 0.89312 0.95132 0.98037 0.92345 0.90686 0.88822 0.89123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.80 10.46 71.24 0.75 -0.06 16 2 C 0.03 0.60 7.39 88.52 0.65 1.26 16 3 N -0.49 -11.90 10.53 -179.40 -1.89 -13.79 16 4 C 0.05 1.14 5.23 41.52 0.22 1.36 16 5 C -0.04 -0.77 6.00 29.11 0.17 -0.59 16 6 C 0.47 13.42 7.92 71.24 0.56 13.99 16 7 O -0.52 -16.73 15.25 21.99 0.34 -16.40 16 8 O -0.34 -11.45 9.47 -45.18 -0.43 -11.88 16 9 C 0.08 2.74 2.14 29.85 0.06 2.81 16 10 H 0.12 3.54 6.31 -2.39 -0.02 3.53 16 11 C -0.16 -4.49 9.19 71.98 0.66 -3.83 16 12 C 0.50 22.06 6.95 87.66 0.61 22.67 16 13 O -0.58 -31.06 16.13 15.21 0.25 -30.82 16 14 N -0.60 -25.88 2.86 -851.13 -2.43 -28.31 16 15 C 0.07 2.04 9.79 127.77 1.25 3.29 16 16 C 0.26 13.93 5.18 85.63 0.44 14.37 16 17 C -0.54 -30.96 9.39 25.60 0.24 -30.72 16 18 H 0.06 3.22 7.81 -2.91 -0.02 3.19 16 19 C 0.01 0.44 5.46 84.65 0.46 0.90 16 20 N -0.93 -55.76 13.29 21.45 0.28 -55.47 16 21 Si 0.97 44.54 29.54 68.60 2.03 46.57 16 22 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 23 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 24 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 25 C -0.22 -4.15 6.59 24.64 0.16 -3.99 16 26 C -0.08 -1.21 10.10 71.23 0.72 -0.50 16 27 S 0.16 2.46 23.18 -56.49 -1.31 1.15 16 28 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.15 2.39 6.71 -2.39 -0.02 2.38 16 32 H 0.13 2.60 8.14 -2.39 -0.02 2.58 16 33 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.10 2.52 6.33 -2.38 -0.02 2.51 16 35 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.08 2.49 8.03 -2.39 -0.02 2.47 16 38 H 0.09 2.17 4.92 -2.39 -0.01 2.16 16 39 H 0.03 1.65 8.07 -2.39 -0.02 1.63 16 40 H 0.00 0.09 7.36 -2.38 -0.02 0.08 16 41 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 42 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.09 1.15 6.76 -2.39 -0.02 1.13 16 Total: -1.00 -80.81 387.23 4.83 -75.98 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: 1.02 Total: 12.01 kcal Atomic # 6 Polarization: 13.98 SS G_CDS: 6.97 Total: 20.95 kcal Atomic # 7 Polarization: -93.53 SS G_CDS: -4.04 Total: -97.57 kcal Atomic # 8 Polarization: -59.24 SS G_CDS: 0.15 Total: -59.09 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Atomic # 16 Polarization: 2.46 SS G_CDS: -1.31 Total: 1.15 kcal Total: -80.81 4.83 -75.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767548578.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.815 kcal (2) G-P(sol) polarization free energy of solvation -80.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds