Wall clock time and date at job start Sat Apr 11 2020 05:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29027 * 124.91203 * 2 1 4 4 C 1.31780 * 117.12344 * 180.02562 * 3 2 1 5 5 C 1.50702 * 122.75211 * 179.97438 * 4 3 2 6 6 C 1.50704 * 109.47207 * 90.02194 * 5 4 3 7 7 O 1.20826 * 119.99847 * 359.97438 * 6 5 4 8 8 O 1.34229 * 119.99888 * 180.02562 * 6 5 4 9 9 C 1.45206 * 116.99848 * 179.97438 * 8 6 5 10 10 H 1.08998 * 109.46660 * 329.99611 * 9 8 6 11 11 C 1.52997 * 109.47147 * 89.99847 * 9 8 6 12 12 C 1.50697 * 109.47064 * 210.00247 * 9 8 6 13 13 O 1.21285 * 120.00040 * 354.99791 * 12 9 8 14 14 N 1.34778 * 119.99902 * 174.99933 * 12 9 8 15 15 C 1.46493 * 120.00087 * 359.97438 * 14 12 9 16 16 C 1.46505 * 119.99823 * 179.97438 * 14 12 9 17 17 C 1.50697 * 109.46900 * 89.99912 * 16 14 12 18 18 H 1.07995 * 120.00161 * 0.02562 * 17 16 14 19 19 C 1.37880 * 120.00017 * 179.97438 * 17 16 14 20 20 N 1.31522 * 119.99535 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00201 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.46882 * 90.00340 * 21 19 17 23 23 H 1.48495 * 109.47075 * 209.99813 * 21 19 17 24 24 H 1.48493 * 109.47218 * 330.00506 * 21 19 17 25 25 C 1.33640 * 114.50303 * 0.23018 * 4 3 2 26 26 C 1.50695 * 126.04210 * 179.77003 * 25 4 3 27 27 S 1.70978 * 124.91737 * 180.02562 * 2 1 3 28 28 H 1.08994 * 109.47598 * 89.99794 * 1 2 3 29 29 H 1.09007 * 109.46848 * 209.99604 * 1 2 3 30 30 H 1.09003 * 109.47384 * 329.98993 * 1 2 3 31 31 H 1.08996 * 109.47093 * 330.01947 * 5 4 3 32 32 H 1.08998 * 109.47372 * 210.01805 * 5 4 3 33 33 H 1.09002 * 109.47153 * 179.97438 * 11 9 8 34 34 H 1.09001 * 109.46832 * 60.00119 * 11 9 8 35 35 H 1.09004 * 109.47261 * 300.00100 * 11 9 8 36 36 H 1.09002 * 109.47115 * 89.99747 * 15 14 12 37 37 H 1.08998 * 109.47192 * 209.99907 * 15 14 12 38 38 H 1.08999 * 109.47064 * 329.99847 * 15 14 12 39 39 H 1.08997 * 109.46961 * 210.00478 * 16 14 12 40 40 H 1.09005 * 109.46984 * 329.99937 * 16 14 12 41 41 H 0.97003 * 119.99529 * 179.97438 * 20 19 17 42 42 H 1.08999 * 109.47310 * 90.00428 * 26 25 4 43 43 H 1.08997 * 109.47373 * 210.00189 * 26 25 4 44 44 H 1.08996 * 109.47300 * 329.99924 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2454 1.0581 0.0000 4 6 3.5511 0.8795 -0.0005 5 6 4.5306 2.0247 -0.0012 6 6 4.8582 2.4064 1.4195 7 8 4.3481 1.8100 2.3382 8 8 5.7157 3.4096 1.6642 9 6 5.9839 3.7228 3.0564 10 1 5.1060 3.4863 3.6576 11 6 7.1746 2.8955 3.5450 12 6 6.3031 5.1896 3.1889 13 8 6.3937 5.8824 2.1976 14 7 6.4879 5.7315 4.4090 15 6 6.3779 4.8948 5.6065 16 6 6.7987 7.1574 4.5378 17 6 5.5178 7.9416 4.6608 18 1 4.5673 7.4292 4.6452 19 6 5.5593 9.3133 4.7945 20 7 6.7169 9.9372 4.8141 21 14 3.9715 10.2853 4.9478 22 1 3.6013 10.4058 6.3809 23 1 4.1629 11.6400 4.3705 24 1 2.8883 9.5829 4.2140 25 6 3.9354 -0.4005 -0.0059 26 6 5.3574 -0.8992 -0.0126 27 16 2.4857 -1.4020 -0.0006 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3634 0.8899 0.5140 31 1 4.0901 2.8793 -0.5146 32 1 5.4428 1.7224 -0.5156 33 1 7.3762 3.1309 4.5901 34 1 8.0525 3.1321 2.9438 35 1 6.9437 1.8345 3.4492 36 1 7.3542 4.4736 5.8463 37 1 6.0283 5.5007 6.4423 38 1 5.6694 4.0874 5.4217 39 1 7.4095 7.3173 5.4262 40 1 7.3458 7.4911 3.6560 41 1 6.7461 10.9023 4.9077 42 1 5.7041 -1.0227 1.0134 43 1 5.4039 -1.8576 -0.5296 44 1 5.9930 -0.1781 -0.5266 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767548582.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:22 Heat of formation + Delta-G solvation = -76.154075 kcal Electronic energy + Delta-G solvation = -27134.811464 eV Core-core repulsion = 23179.633599 eV Total energy + Delta-G solvation = -3955.177865 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.93917 -40.00919 -38.83939 -36.37180 -34.91490 -34.21671 -32.89569 -31.73502 -30.79304 -30.07051 -27.70257 -26.18106 -25.62248 -24.49962 -23.49731 -22.48082 -20.94353 -19.12725 -18.83959 -18.23796 -17.94248 -16.63104 -16.53351 -16.21884 -15.89848 -15.38320 -15.17256 -14.83094 -14.60148 -14.24855 -13.87054 -13.76716 -13.71622 -13.49706 -13.18193 -13.15145 -12.90215 -12.57266 -12.50423 -12.36955 -12.23470 -12.14518 -12.00082 -11.66827 -11.43990 -11.40175 -11.19789 -10.91316 -10.69794 -10.58957 -10.51077 -10.16641 -9.86781 -9.64954 -9.47170 -8.93510 -8.86132 -8.44655 -7.72893 -6.05811 -4.10622 0.40930 1.02854 1.41173 2.16120 2.22604 2.82769 3.26635 3.30711 3.37390 3.43296 3.74999 3.91871 4.42031 4.44383 4.65038 4.65946 4.72989 4.86631 4.92451 4.98853 5.02381 5.09999 5.12655 5.15118 5.28894 5.29379 5.44463 5.51815 5.54172 5.61575 5.64546 5.65459 5.84472 5.90011 5.98642 6.21306 6.45270 6.98217 7.38664 7.46501 7.50019 7.74744 7.90499 8.20223 8.29103 8.84876 8.99693 9.54493 11.02339 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016186 B = 0.002465 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.473143 B =11354.710752 C =12390.311658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.048 3.952 3 N -0.458 5.458 4 C 0.076 3.924 5 C -0.039 4.039 6 C 0.467 3.533 7 O -0.503 6.503 8 O -0.324 6.324 9 C 0.070 3.930 10 H 0.105 0.895 11 C -0.169 4.169 12 C 0.509 3.491 13 O -0.519 6.519 14 N -0.596 5.596 15 C 0.076 3.924 16 C 0.247 3.753 17 C -0.529 4.529 18 H 0.057 0.943 19 C 0.062 3.938 20 N -0.894 5.894 21 Si 0.899 3.101 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.274 1.274 25 C -0.206 4.206 26 C -0.079 4.079 27 S 0.118 5.882 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.126 0.874 32 H 0.123 0.877 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.050 0.950 37 H 0.078 0.922 38 H 0.057 0.943 39 H 0.036 0.964 40 H 0.046 0.954 41 H 0.264 0.736 42 H 0.080 0.920 43 H 0.073 0.927 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.965 -26.413 -8.407 28.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.231 4.231 3 N -0.172 5.172 4 C -0.056 4.056 5 C -0.079 4.079 6 C 0.308 3.692 7 O -0.391 6.391 8 O -0.239 6.239 9 C 0.012 3.988 10 H 0.122 0.878 11 C -0.226 4.226 12 C 0.293 3.707 13 O -0.394 6.394 14 N -0.330 5.330 15 C -0.068 4.068 16 C 0.128 3.872 17 C -0.568 4.568 18 H 0.076 0.924 19 C -0.141 4.141 20 N -0.533 5.533 21 Si 0.726 3.274 22 H -0.206 1.206 23 H -0.210 1.210 24 H -0.198 1.198 25 C -0.327 4.327 26 C -0.138 4.138 27 S 0.373 5.627 28 H 0.105 0.895 29 H 0.099 0.901 30 H 0.109 0.891 31 H 0.144 0.856 32 H 0.141 0.859 33 H 0.107 0.893 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.069 0.931 37 H 0.097 0.903 38 H 0.076 0.924 39 H 0.054 0.946 40 H 0.064 0.936 41 H 0.073 0.927 42 H 0.098 0.902 43 H 0.092 0.908 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.459 -26.560 -8.611 28.449 hybrid contribution -0.415 1.295 0.413 1.421 sum -5.874 -25.265 -8.197 27.203 Atomic orbital electron populations 1.20448 0.85034 1.04377 1.03869 1.26848 1.01663 0.90641 1.03903 1.65998 1.04204 1.31797 1.15229 1.19243 0.89835 0.92579 1.03916 1.19742 0.98722 0.97498 0.91957 1.23380 0.75906 0.77623 0.92257 1.90652 1.49985 1.51927 1.46493 1.86600 1.58334 1.49425 1.29588 1.22626 1.00542 0.95143 0.80500 0.87760 1.22270 0.97379 0.99734 1.03235 1.19764 0.79096 0.87410 0.84449 1.90706 1.49936 1.62186 1.36612 1.48071 1.68753 1.12198 1.03942 1.21840 1.00128 0.95220 0.89568 1.19354 0.96730 0.72699 0.98405 1.21429 0.92869 0.91919 1.50536 0.92426 1.24933 0.96547 0.97529 0.95043 1.69934 1.24153 1.09242 1.49996 0.86481 0.83455 0.79315 0.78113 1.20605 1.21017 1.19841 1.25630 1.00544 0.95556 1.10984 1.20317 0.88462 1.01705 1.03355 1.83822 0.97292 1.12463 1.69116 0.89540 0.90111 0.89087 0.85555 0.85889 0.89310 0.90922 0.91395 0.93122 0.90289 0.92393 0.94598 0.93621 0.92662 0.90151 0.90802 0.90000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.54 10.46 36.00 0.38 -0.16 16 2 C 0.05 0.51 7.39 -13.46 -0.10 0.41 16 3 N -0.46 -6.13 10.53 -8.06 -0.08 -6.22 16 4 C 0.08 0.93 5.23 -84.22 -0.44 0.49 16 5 C -0.04 -0.45 5.99 -29.03 -0.17 -0.63 16 6 C 0.47 7.05 7.92 36.01 0.29 7.34 16 7 O -0.50 -8.58 15.25 -18.75 -0.29 -8.87 16 8 O -0.32 -5.55 9.42 -45.88 -0.43 -5.98 16 9 C 0.07 1.20 2.16 -27.89 -0.06 1.14 16 10 H 0.10 1.76 6.14 -51.93 -0.32 1.44 16 11 C -0.17 -2.21 9.27 37.16 0.34 -1.86 16 12 C 0.51 11.12 7.10 -10.99 -0.08 11.04 16 13 O -0.52 -13.69 16.09 -14.05 -0.23 -13.92 16 14 N -0.60 -12.83 2.86 -182.96 -0.52 -13.35 16 15 C 0.08 1.21 8.92 59.84 0.53 1.74 16 16 C 0.25 6.49 5.16 -5.19 -0.03 6.46 16 17 C -0.53 -15.19 9.39 -34.44 -0.32 -15.51 16 18 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 19 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 20 N -0.89 -26.67 13.29 55.43 0.74 -25.93 16 21 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.27 -6.78 7.11 56.52 0.40 -6.37 16 25 C -0.21 -2.10 6.59 -35.92 -0.24 -2.33 16 26 C -0.08 -0.57 10.10 36.00 0.36 -0.20 16 27 S 0.12 1.04 23.18 -107.50 -2.49 -1.45 16 28 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.40 8.14 -51.92 -0.42 -0.02 16 30 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.13 1.42 8.14 -51.93 -0.42 1.00 16 32 H 0.12 1.00 6.71 -51.93 -0.35 0.65 16 33 H 0.09 1.03 5.12 -51.93 -0.27 0.77 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.05 0.66 7.02 -51.93 -0.36 0.30 16 37 H 0.08 1.28 8.07 -51.93 -0.42 0.86 16 38 H 0.06 0.79 6.08 -51.93 -0.32 0.48 16 39 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 40 H 0.05 1.35 7.42 -51.93 -0.39 0.96 16 41 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 42 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.08 0.48 6.76 -51.93 -0.35 0.13 16 LS Contribution 385.28 15.07 5.81 5.81 Total: -1.00 -37.34 385.28 -8.27 -45.61 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -6.11 Total: -2.42 kcal Atomic # 6 Polarization: 9.23 SS G_CDS: 0.37 Total: 9.60 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: 0.13 Total: -45.50 kcal Atomic # 8 Polarization: -27.82 SS G_CDS: -0.94 Total: -28.76 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Atomic # 16 Polarization: 1.04 SS G_CDS: -2.49 Total: -1.45 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -37.34 -8.27 -45.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767548582.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.545 kcal (2) G-P(sol) polarization free energy of solvation -37.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds