Wall clock time and date at job start Sat Apr 11 2020 05:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29027 * 124.91203 * 2 1 4 4 C 1.31780 * 117.12344 * 180.02562 * 3 2 1 5 5 C 1.50702 * 122.75211 * 179.97438 * 4 3 2 6 6 C 1.50704 * 109.47207 * 90.02194 * 5 4 3 7 7 O 1.20826 * 119.99847 * 359.97438 * 6 5 4 8 8 O 1.34229 * 119.99888 * 180.02562 * 6 5 4 9 9 C 1.45206 * 116.99848 * 179.97438 * 8 6 5 10 10 H 1.08998 * 109.46660 * 329.99611 * 9 8 6 11 11 C 1.52997 * 109.47147 * 89.99847 * 9 8 6 12 12 C 1.50697 * 109.47064 * 210.00247 * 9 8 6 13 13 O 1.21285 * 120.00040 * 354.99791 * 12 9 8 14 14 N 1.34778 * 119.99902 * 174.99933 * 12 9 8 15 15 C 1.46493 * 120.00087 * 359.97438 * 14 12 9 16 16 C 1.46505 * 119.99823 * 179.97438 * 14 12 9 17 17 C 1.50697 * 109.46900 * 89.99912 * 16 14 12 18 18 H 1.07995 * 120.00161 * 0.02562 * 17 16 14 19 19 C 1.37880 * 120.00017 * 179.97438 * 17 16 14 20 20 N 1.31522 * 119.99535 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00201 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.46882 * 90.00340 * 21 19 17 23 23 H 1.48495 * 109.47075 * 209.99813 * 21 19 17 24 24 H 1.48493 * 109.47218 * 330.00506 * 21 19 17 25 25 C 1.33640 * 114.50303 * 0.23018 * 4 3 2 26 26 C 1.50695 * 126.04210 * 179.77003 * 25 4 3 27 27 S 1.70978 * 124.91737 * 180.02562 * 2 1 3 28 28 H 1.08994 * 109.47598 * 89.99794 * 1 2 3 29 29 H 1.09007 * 109.46848 * 209.99604 * 1 2 3 30 30 H 1.09003 * 109.47384 * 329.98993 * 1 2 3 31 31 H 1.08996 * 109.47093 * 330.01947 * 5 4 3 32 32 H 1.08998 * 109.47372 * 210.01805 * 5 4 3 33 33 H 1.09002 * 109.47153 * 179.97438 * 11 9 8 34 34 H 1.09001 * 109.46832 * 60.00119 * 11 9 8 35 35 H 1.09004 * 109.47261 * 300.00100 * 11 9 8 36 36 H 1.09002 * 109.47115 * 89.99747 * 15 14 12 37 37 H 1.08998 * 109.47192 * 209.99907 * 15 14 12 38 38 H 1.08999 * 109.47064 * 329.99847 * 15 14 12 39 39 H 1.08997 * 109.46961 * 210.00478 * 16 14 12 40 40 H 1.09005 * 109.46984 * 329.99937 * 16 14 12 41 41 H 0.97003 * 119.99529 * 179.97438 * 20 19 17 42 42 H 1.08999 * 109.47310 * 90.00428 * 26 25 4 43 43 H 1.08997 * 109.47373 * 210.00189 * 26 25 4 44 44 H 1.08996 * 109.47300 * 329.99924 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2454 1.0581 0.0000 4 6 3.5511 0.8795 -0.0005 5 6 4.5306 2.0247 -0.0012 6 6 4.8582 2.4064 1.4195 7 8 4.3481 1.8100 2.3382 8 8 5.7157 3.4096 1.6642 9 6 5.9839 3.7228 3.0564 10 1 5.1060 3.4863 3.6576 11 6 7.1746 2.8955 3.5450 12 6 6.3031 5.1896 3.1889 13 8 6.3937 5.8824 2.1976 14 7 6.4879 5.7315 4.4090 15 6 6.3779 4.8948 5.6065 16 6 6.7987 7.1574 4.5378 17 6 5.5178 7.9416 4.6608 18 1 4.5673 7.4292 4.6452 19 6 5.5593 9.3133 4.7945 20 7 6.7169 9.9372 4.8141 21 14 3.9715 10.2853 4.9478 22 1 3.6013 10.4058 6.3809 23 1 4.1629 11.6400 4.3705 24 1 2.8883 9.5829 4.2140 25 6 3.9354 -0.4005 -0.0059 26 6 5.3574 -0.8992 -0.0126 27 16 2.4857 -1.4020 -0.0006 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3634 0.8899 0.5140 31 1 4.0901 2.8793 -0.5146 32 1 5.4428 1.7224 -0.5156 33 1 7.3762 3.1309 4.5901 34 1 8.0525 3.1321 2.9438 35 1 6.9437 1.8345 3.4492 36 1 7.3542 4.4736 5.8463 37 1 6.0283 5.5007 6.4423 38 1 5.6694 4.0874 5.4217 39 1 7.4095 7.3173 5.4262 40 1 7.3458 7.4911 3.6560 41 1 6.7461 10.9023 4.9077 42 1 5.7041 -1.0227 1.0134 43 1 5.4039 -1.8576 -0.5296 44 1 5.9930 -0.1781 -0.5266 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767548582.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:21 Heat of formation + Delta-G solvation = -100.234998 kcal Electronic energy + Delta-G solvation = -27135.855691 eV Core-core repulsion = 23179.633599 eV Total energy + Delta-G solvation = -3956.222092 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.10169 -41.07022 -40.34017 -37.67776 -36.72795 -34.99967 -34.88623 -33.14444 -31.51175 -30.87784 -29.60208 -27.68931 -26.42943 -25.95403 -24.74818 -23.79648 -22.16100 -20.47273 -19.86387 -19.19579 -19.03729 -18.70669 -18.06482 -17.48479 -17.33269 -16.85962 -16.46119 -16.00793 -15.91092 -15.62847 -14.98674 -14.76211 -14.54547 -14.32651 -14.28122 -14.22690 -14.10414 -13.78959 -13.67378 -13.54196 -13.37217 -13.24684 -13.10010 -13.03633 -12.86936 -12.80443 -12.61923 -12.53979 -12.24736 -12.13372 -11.95744 -11.76188 -11.71725 -10.66725 -10.65379 -10.63632 -10.19164 -9.62668 -9.54762 -8.26219 -6.40709 -0.33164 0.33618 0.66128 1.00109 1.15828 1.34282 1.37404 1.47476 1.59302 1.80909 2.31938 2.44391 3.03667 3.05426 3.37469 3.52351 3.71104 3.81948 3.85094 3.94946 4.04310 4.23822 4.30243 4.39468 4.49890 4.57122 4.60661 4.64386 4.66846 4.68219 4.84030 4.87601 4.88707 4.93535 5.07472 5.08914 5.16330 5.20602 5.30365 5.48528 5.75603 6.01090 6.49055 6.61915 6.67739 6.74752 7.17711 7.33277 8.81106 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016186 B = 0.002465 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.473143 B =11354.710752 C =12390.311658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.029 3.971 3 N -0.502 5.502 4 C 0.046 3.954 5 C -0.035 4.035 6 C 0.468 3.532 7 O -0.524 6.524 8 O -0.341 6.341 9 C 0.079 3.921 10 H 0.109 0.891 11 C -0.160 4.160 12 C 0.499 3.501 13 O -0.578 6.578 14 N -0.600 5.600 15 C 0.069 3.931 16 C 0.260 3.740 17 C -0.548 4.548 18 H 0.049 0.951 19 C 0.011 3.989 20 N -0.925 5.925 21 Si 0.966 3.034 22 H -0.261 1.261 23 H -0.278 1.278 24 H -0.277 1.277 25 C -0.210 4.210 26 C -0.082 4.082 27 S 0.162 5.838 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.080 0.920 31 H 0.124 0.876 32 H 0.157 0.843 33 H 0.106 0.894 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.035 0.965 40 H 0.002 0.998 41 H 0.269 0.731 42 H 0.080 0.920 43 H 0.093 0.907 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.631 -28.881 -7.958 30.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.249 4.249 3 N -0.217 5.217 4 C -0.085 4.085 5 C -0.075 4.075 6 C 0.312 3.688 7 O -0.412 6.412 8 O -0.257 6.257 9 C 0.021 3.979 10 H 0.126 0.874 11 C -0.217 4.217 12 C 0.286 3.714 13 O -0.458 6.458 14 N -0.332 5.332 15 C -0.073 4.073 16 C 0.139 3.861 17 C -0.587 4.587 18 H 0.067 0.933 19 C -0.189 4.189 20 N -0.564 5.564 21 Si 0.790 3.210 22 H -0.186 1.186 23 H -0.203 1.203 24 H -0.202 1.202 25 C -0.331 4.331 26 C -0.141 4.141 27 S 0.418 5.582 28 H 0.121 0.879 29 H 0.121 0.879 30 H 0.099 0.901 31 H 0.142 0.858 32 H 0.175 0.825 33 H 0.125 0.875 34 H 0.090 0.910 35 H 0.108 0.892 36 H 0.105 0.895 37 H 0.093 0.907 38 H 0.103 0.897 39 H 0.053 0.947 40 H 0.020 0.980 41 H 0.078 0.922 42 H 0.098 0.902 43 H 0.112 0.888 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.129 -29.075 -8.121 30.804 hybrid contribution -0.213 1.982 0.263 2.011 sum -6.342 -27.093 -7.858 28.913 Atomic orbital electron populations 1.20597 0.83165 1.04927 1.05091 1.27413 1.03113 0.91071 1.03290 1.66006 1.05127 1.33624 1.16962 1.19359 0.89769 0.93421 1.05942 1.19872 1.00257 0.97635 0.89715 1.24044 0.74761 0.76556 0.93471 1.90626 1.50592 1.52591 1.47440 1.86613 1.59106 1.50435 1.29552 1.22528 1.02342 0.91886 0.81131 0.87370 1.22277 0.95317 1.00061 1.03997 1.20661 0.77766 0.89407 0.83572 1.90664 1.52535 1.64096 1.38495 1.48058 1.68109 1.11022 1.05995 1.22186 1.03049 0.95024 0.87021 1.18853 0.95461 0.75634 0.96112 1.21678 0.93248 0.92775 1.50971 0.93263 1.25818 1.00057 0.98556 0.94429 1.70037 1.26218 1.09775 1.50373 0.85438 0.78907 0.77649 0.78962 1.18595 1.20323 1.20223 1.26080 1.02427 0.95351 1.09242 1.20470 0.86812 1.03033 1.03775 1.83588 0.95878 1.10754 1.67952 0.87919 0.87923 0.90125 0.85830 0.82524 0.87521 0.90981 0.89230 0.89483 0.90679 0.89747 0.94711 0.97969 0.92233 0.90170 0.88817 0.88710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.00 10.46 71.24 0.75 -0.26 16 2 C 0.03 0.58 7.39 88.52 0.65 1.24 16 3 N -0.50 -13.36 10.53 -179.40 -1.89 -15.25 16 4 C 0.05 1.09 5.23 41.52 0.22 1.31 16 5 C -0.04 -0.80 5.99 29.10 0.17 -0.62 16 6 C 0.47 13.90 7.92 71.24 0.56 14.46 16 7 O -0.52 -17.45 15.25 21.96 0.34 -17.11 16 8 O -0.34 -11.64 9.42 -45.06 -0.42 -12.06 16 9 C 0.08 2.65 2.16 29.85 0.06 2.72 16 10 H 0.11 3.53 6.14 -2.39 -0.01 3.52 16 11 C -0.16 -3.79 9.27 71.98 0.67 -3.12 16 12 C 0.50 22.24 7.10 87.66 0.62 22.86 16 13 O -0.58 -31.95 16.09 15.70 0.25 -31.70 16 14 N -0.60 -26.07 2.86 -851.14 -2.43 -28.50 16 15 C 0.07 2.06 8.92 127.77 1.14 3.20 16 16 C 0.26 14.17 5.16 85.63 0.44 14.61 16 17 C -0.55 -32.26 9.39 25.60 0.24 -32.02 16 18 H 0.05 2.91 7.81 -2.91 -0.02 2.88 16 19 C 0.01 0.63 5.46 84.65 0.46 1.10 16 20 N -0.92 -56.10 13.29 21.45 0.28 -55.81 16 21 Si 0.97 45.74 29.54 68.60 2.03 47.77 16 22 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 23 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 24 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 25 C -0.21 -3.90 6.59 24.64 0.16 -3.73 16 26 C -0.08 -0.96 10.10 71.23 0.72 -0.24 16 27 S 0.16 2.56 23.18 -56.49 -1.31 1.25 16 28 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.10 0.82 8.14 -2.38 -0.02 0.80 16 30 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.12 2.83 8.14 -2.39 -0.02 2.81 16 32 H 0.16 2.29 6.71 -2.39 -0.02 2.28 16 33 H 0.11 2.12 5.12 -2.39 -0.01 2.11 16 34 H 0.07 1.74 8.14 -2.39 -0.02 1.73 16 35 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 36 H 0.09 2.00 7.02 -2.39 -0.02 1.99 16 37 H 0.07 2.33 8.07 -2.39 -0.02 2.31 16 38 H 0.08 2.10 6.08 -2.39 -0.01 2.08 16 39 H 0.03 1.87 8.07 -2.39 -0.02 1.85 16 40 H 0.00 0.14 7.42 -2.38 -0.02 0.12 16 41 H 0.27 15.24 8.31 -92.71 -0.77 14.46 16 42 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.09 0.86 6.76 -2.39 -0.02 0.84 16 Total: -1.00 -84.71 385.28 4.75 -79.97 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: 1.03 Total: 9.94 kcal Atomic # 6 Polarization: 14.63 SS G_CDS: 6.88 Total: 21.50 kcal Atomic # 7 Polarization: -95.52 SS G_CDS: -4.04 Total: -99.56 kcal Atomic # 8 Polarization: -61.04 SS G_CDS: 0.16 Total: -60.87 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Atomic # 16 Polarization: 2.56 SS G_CDS: -1.31 Total: 1.25 kcal Total: -84.71 4.75 -79.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767548582.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.268 kcal (2) G-P(sol) polarization free energy of solvation -84.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds