Wall clock time and date at job start Sat Apr 11 2020 05:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31534 * 120.00087 * 2 1 4 4 C 1.33279 * 121.06724 * 179.97438 * 3 2 1 5 5 C 1.41063 * 132.12176 * 180.02562 * 4 3 2 6 6 C 1.39983 * 134.78854 * 0.04333 * 5 4 3 7 7 C 1.36890 * 118.14520 * 179.97438 * 6 5 4 8 8 C 1.38920 * 120.51386 * 0.02562 * 7 6 5 9 9 N 1.31142 * 122.46393 * 359.97334 * 8 7 6 10 10 C 1.34091 * 121.16832 * 0.02562 * 9 8 7 11 11 N 1.32547 * 133.90268 * 180.02562 * 10 9 8 12 12 N 1.36490 * 120.75083 * 359.97438 * 4 3 2 13 13 C 1.36361 * 119.58766 * 0.02562 * 12 4 3 14 14 C 1.50700 * 120.32688 * 180.02562 * 13 12 4 15 15 C 1.35794 * 119.34552 * 0.02562 * 13 12 4 16 16 C 1.50703 * 120.37152 * 180.02562 * 15 13 12 17 17 C 1.53001 * 109.47070 * 269.97717 * 16 15 13 18 18 C 1.50703 * 109.46690 * 180.02562 * 17 16 15 19 19 O 1.21203 * 120.00482 * 0.02562 * 18 17 16 20 20 O 1.34308 * 119.99506 * 179.97438 * 18 17 16 21 21 C 1.34929 * 117.00091 * 179.97438 * 20 18 17 22 22 H 1.08001 * 119.99422 * 0.02562 * 21 20 18 23 23 C 1.38743 * 120.00130 * 179.97438 * 21 20 18 24 24 N 1.31445 * 120.00214 * 0.02562 * 23 21 20 25 25 Si 1.86807 * 119.99871 * 180.02562 * 23 21 20 26 26 H 1.48492 * 109.47106 * 60.00215 * 25 23 21 27 27 H 1.48504 * 109.46808 * 180.02562 * 25 23 21 28 28 H 1.48495 * 109.47012 * 300.00085 * 25 23 21 29 29 H 1.08999 * 109.46915 * 90.00226 * 1 2 3 30 30 H 1.09004 * 109.46553 * 210.00248 * 1 2 3 31 31 H 1.09001 * 109.46686 * 329.99891 * 1 2 3 32 32 H 1.07999 * 120.93094 * 359.95256 * 6 5 4 33 33 H 1.08005 * 119.74647 * 179.97438 * 7 6 5 34 34 H 1.08007 * 118.76914 * 179.97438 * 8 7 6 35 35 H 1.08994 * 109.47597 * 269.98474 * 14 13 12 36 36 H 1.09003 * 109.46690 * 29.98156 * 14 13 12 37 37 H 1.09002 * 109.47167 * 149.97363 * 14 13 12 38 38 H 1.08998 * 109.47209 * 29.97549 * 16 15 13 39 39 H 1.09001 * 109.47080 * 149.97468 * 16 15 13 40 40 H 1.08998 * 109.46967 * 299.99979 * 17 16 15 41 41 H 1.08997 * 109.46935 * 60.00086 * 17 16 15 42 42 H 0.96998 * 119.99948 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1647 1.1391 0.0000 4 6 3.4973 1.1639 0.0005 5 6 4.4238 2.2276 0.0011 6 6 4.3223 3.6238 0.0021 7 6 5.4794 4.3553 0.0030 8 6 6.7152 3.7206 0.0023 9 7 6.8358 2.4148 0.0013 10 6 5.7572 1.6181 0.0004 11 7 5.5852 0.3039 -0.0002 12 7 4.2169 0.0041 0.0016 13 6 3.5642 -1.1932 0.0016 14 6 4.3422 -2.4839 0.0033 15 6 2.2064 -1.2110 0.0000 16 6 1.4616 -2.5210 0.0006 17 6 1.2107 -2.9657 -1.4417 18 6 0.4653 -4.2754 -1.4411 19 8 0.1641 -4.8009 -0.3912 20 8 0.1338 -4.8599 -2.6040 21 6 -0.5323 -6.0312 -2.5329 22 1 -0.7753 -6.4566 -1.5704 23 6 -0.9058 -6.6886 -3.6962 24 7 -0.6104 -6.1706 -4.8677 25 14 -1.8286 -8.3098 -3.5978 26 1 -3.1089 -8.1074 -2.8732 27 1 -2.1085 -8.8041 -4.9699 28 1 -1.0014 -9.3069 -2.8721 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3632 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 3.3581 4.1103 0.0019 33 1 5.4313 5.4343 0.0034 34 1 7.6101 4.3253 0.0025 35 1 4.5307 -2.7959 -1.0238 36 1 5.2915 -2.3351 0.5179 37 1 3.7671 -3.2540 0.5174 38 1 2.0552 -3.2763 0.5155 39 1 0.5079 -2.3965 0.5136 40 1 0.6170 -2.2104 -1.9567 41 1 2.1643 -3.0902 -1.9546 42 1 -0.8719 -6.6300 -5.6809 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000803761042.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:36 Heat of formation + Delta-G solvation = 39.575632 kcal Electronic energy + Delta-G solvation = -28139.512460 eV Core-core repulsion = 24086.201812 eV Total energy + Delta-G solvation = -4053.310649 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.75036 -41.16275 -40.74894 -38.62255 -37.45013 -36.62600 -34.60218 -34.25659 -33.83168 -31.95142 -31.10710 -29.55781 -28.81669 -27.76407 -26.71695 -24.69853 -23.79790 -22.98061 -22.32866 -21.47573 -19.84004 -19.81254 -19.25584 -18.48769 -18.02648 -17.70372 -17.05486 -16.77203 -16.62621 -16.20781 -15.98926 -15.47768 -15.32100 -15.13581 -14.79846 -14.73731 -14.37139 -14.19334 -13.93568 -13.89372 -13.66197 -13.50782 -13.36698 -13.27352 -13.06071 -12.95716 -12.88146 -12.54821 -12.30950 -12.16900 -11.95885 -11.95103 -11.55630 -11.33524 -11.20442 -10.99054 -10.66638 -10.27628 -9.98966 -8.77631 -8.50740 -6.29848 -1.07804 -0.84059 0.39247 0.58465 0.75197 1.35285 1.37176 1.52208 1.69824 1.97634 2.14550 2.33175 2.39840 2.75390 2.80815 2.95715 3.01485 3.32235 3.36644 3.50440 3.75445 3.86029 3.94696 4.00435 4.12871 4.14921 4.25568 4.35063 4.43847 4.50085 4.56183 4.62057 4.68493 4.69333 4.84546 4.88367 4.98054 5.01743 5.05839 5.21546 5.23301 5.25581 5.34741 5.62434 5.86668 6.11504 6.26231 6.72983 6.91468 6.95655 7.82026 8.69523 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.024747 B = 0.002191 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.197991 B =12777.331908 C =13093.945515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.224 3.776 3 N -0.476 5.476 4 C 0.298 3.702 5 C -0.279 4.279 6 C 0.029 3.971 7 C -0.229 4.229 8 C 0.198 3.802 9 N -0.528 5.528 10 C 0.287 3.713 11 N -0.358 5.358 12 N -0.269 5.269 13 C 0.185 3.815 14 C -0.126 4.126 15 C -0.152 4.152 16 C -0.046 4.046 17 C -0.091 4.091 18 C 0.401 3.599 19 O -0.576 6.576 20 O -0.249 6.249 21 C -0.415 4.415 22 H 0.086 0.914 23 C -0.006 4.006 24 N -0.905 5.905 25 Si 1.013 2.987 26 H -0.260 1.260 27 H -0.266 1.266 28 H -0.262 1.262 29 H 0.110 0.890 30 H 0.108 0.892 31 H 0.102 0.898 32 H 0.158 0.842 33 H 0.183 0.817 34 H 0.207 0.793 35 H 0.107 0.893 36 H 0.087 0.913 37 H 0.121 0.879 38 H 0.099 0.901 39 H 0.111 0.889 40 H 0.115 0.885 41 H 0.106 0.894 42 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.251 19.063 9.749 22.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.066 3.934 3 N -0.190 5.190 4 C 0.057 3.943 5 C -0.292 4.292 6 C 0.002 3.998 7 C -0.251 4.251 8 C 0.023 3.977 9 N -0.244 5.244 10 C 0.029 3.971 11 N -0.193 5.193 12 N -0.033 5.033 13 C 0.066 3.934 14 C -0.182 4.182 15 C -0.158 4.158 16 C -0.084 4.084 17 C -0.128 4.128 18 C 0.249 3.751 19 O -0.473 6.473 20 O -0.157 6.157 21 C -0.491 4.491 22 H 0.103 0.897 23 C -0.206 4.206 24 N -0.543 5.543 25 Si 0.832 3.168 26 H -0.185 1.185 27 H -0.190 1.190 28 H -0.187 1.187 29 H 0.128 0.872 30 H 0.126 0.874 31 H 0.121 0.879 32 H 0.175 0.825 33 H 0.200 0.800 34 H 0.223 0.777 35 H 0.125 0.875 36 H 0.106 0.894 37 H 0.139 0.861 38 H 0.118 0.882 39 H 0.129 0.871 40 H 0.133 0.867 41 H 0.124 0.876 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.367 18.153 9.778 21.895 hybrid contribution -0.883 -0.478 -0.185 1.021 sum 6.484 17.675 9.593 21.130 Atomic orbital electron populations 1.21191 0.83771 1.06380 1.05989 1.22513 0.99598 0.85904 0.85384 1.68017 1.02761 1.29687 1.18516 1.20560 0.88427 0.87317 0.97964 1.19766 0.91647 0.95496 1.22272 1.20986 1.01314 0.88845 0.88682 1.21938 0.91538 1.03312 1.08325 1.23740 1.00061 0.88343 0.85596 1.67695 1.28541 1.06505 1.21675 1.21634 0.89772 0.91408 0.94259 1.78183 0.86445 1.12624 1.42088 1.47314 1.07339 1.06482 1.42209 1.21209 0.92114 0.86549 0.93497 1.21252 1.00763 0.90178 1.06001 1.20282 0.90529 0.98655 1.06297 1.20323 1.01933 0.90555 0.95614 1.21152 1.01459 0.91127 0.99100 1.24219 0.80200 0.88588 0.82107 1.90541 1.56344 1.66843 1.33602 1.83900 1.63405 1.35108 1.33319 1.21349 1.35813 0.96932 0.94988 0.89656 1.26474 0.97630 1.03137 0.93367 1.70069 1.45205 1.40788 0.98245 0.84737 0.78383 0.75294 0.78366 1.18454 1.19005 1.18688 0.87154 0.87373 0.87947 0.82459 0.79955 0.77680 0.87506 0.89438 0.86070 0.88238 0.87064 0.86719 0.87624 0.91413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.63 9.81 71.24 0.70 -0.94 16 2 C 0.22 4.67 6.83 42.99 0.29 4.97 16 3 N -0.48 -12.04 10.37 -180.01 -1.87 -13.90 16 4 C 0.30 8.70 7.95 134.11 1.07 9.77 16 5 C -0.28 -7.91 6.37 -19.98 -0.13 -8.04 16 6 C 0.03 0.58 10.17 22.38 0.23 0.81 16 7 C -0.23 -3.26 9.99 22.12 0.22 -3.04 16 8 C 0.20 3.46 11.09 84.96 0.94 4.40 16 9 N -0.53 -14.94 10.46 -190.31 -1.99 -16.93 16 10 C 0.29 9.28 8.57 136.59 1.17 10.45 16 11 N -0.36 -12.22 12.33 -53.11 -0.65 -12.87 16 12 N -0.27 -8.05 3.82 -179.93 -0.69 -8.74 16 13 C 0.18 4.52 6.85 41.29 0.28 4.80 16 14 C -0.13 -2.54 9.63 71.24 0.69 -1.85 16 15 C -0.15 -3.27 5.11 -20.04 -0.10 -3.37 16 16 C -0.05 -1.00 3.85 29.85 0.11 -0.89 16 17 C -0.09 -2.53 5.79 29.85 0.17 -2.36 16 18 C 0.40 17.21 7.91 71.24 0.56 17.77 16 19 O -0.58 -26.87 15.22 20.80 0.32 -26.55 16 20 O -0.25 -13.47 9.75 14.82 0.14 -13.33 16 21 C -0.41 -23.66 9.64 67.94 0.66 -23.00 16 22 H 0.09 4.88 6.86 -2.91 -0.02 4.86 16 23 C -0.01 -0.33 5.49 84.87 0.47 0.14 16 24 N -0.91 -51.92 13.67 21.62 0.30 -51.62 16 25 Si 1.01 41.69 29.55 68.60 2.03 43.72 16 26 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 27 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 28 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 29 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.11 1.30 6.02 -2.38 -0.01 1.29 16 31 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.16 2.31 8.06 -2.91 -0.02 2.29 16 33 H 0.18 0.95 8.06 -2.91 -0.02 0.93 16 34 H 0.21 1.62 8.06 -2.91 -0.02 1.60 16 35 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.09 1.87 8.03 -2.39 -0.02 1.85 16 37 H 0.12 2.01 5.96 -2.39 -0.01 2.00 16 38 H 0.10 2.13 5.92 -2.39 -0.01 2.11 16 39 H 0.11 2.22 5.98 -2.39 -0.01 2.20 16 40 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 41 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 42 H 0.28 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -82.46 363.52 6.00 -76.45 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 1.09 Total: 14.17 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: 7.33 Total: 9.62 kcal Atomic # 7 Polarization: -99.17 SS G_CDS: -4.91 Total: -104.08 kcal Atomic # 8 Polarization: -40.34 SS G_CDS: 0.46 Total: -39.88 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -82.46 6.00 -76.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000803761042.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.030 kcal (2) G-P(sol) polarization free energy of solvation -82.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds