Wall clock time and date at job start Sat Apr 11 2020 05:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50702 * 110.53387 * 2 1 4 4 C 1.38233 * 119.99831 * 92.55653 * 3 2 1 5 5 C 1.38239 * 119.99227 * 179.78669 * 4 3 2 6 6 C 1.38232 * 120.00674 * 0.46358 * 5 4 3 7 7 C 1.38244 * 119.99485 * 359.76733 * 6 5 4 8 8 C 1.38231 * 119.99820 * 0.02562 * 7 6 5 9 9 N 1.47307 * 110.60064 * 237.00173 * 2 1 3 10 10 C 1.34534 * 106.61730 * 241.47479 * 9 2 1 11 11 O 1.21543 * 123.76763 * 179.97438 * 10 9 2 12 12 N 1.33790 * 112.46010 * 0.02562 * 10 9 2 13 13 C 1.40397 * 124.17819 * 180.02562 * 12 10 9 14 14 C 1.40379 * 125.96812 * 184.94397 * 13 12 10 15 15 C 1.35239 * 107.87320 * 179.97438 * 14 13 12 16 16 N 1.34971 * 107.85180 * 0.02562 * 15 14 13 17 17 C 1.46502 * 125.97841 * 180.02562 * 16 15 14 18 18 C 1.50706 * 109.47280 * 124.99749 * 17 16 15 19 19 H 1.07998 * 119.99723 * 359.97438 * 18 17 16 20 20 C 1.37877 * 119.99957 * 179.97438 * 18 17 16 21 21 N 1.31507 * 119.99991 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 119.99789 * 359.97438 * 20 18 17 23 23 H 1.48507 * 109.46854 * 90.00259 * 22 20 18 24 24 H 1.48497 * 109.47051 * 209.99752 * 22 20 18 25 25 H 1.48495 * 109.47520 * 330.00068 * 22 20 18 26 26 N 1.31198 * 125.97072 * 4.63103 * 13 12 10 27 27 C 1.34771 * 111.64263 * 359.97438 * 12 10 9 28 28 O 1.21242 * 127.15589 * 180.26884 * 27 12 10 29 29 H 1.09003 * 109.46902 * 297.87385 * 1 2 3 30 30 H 1.08996 * 109.46698 * 57.86988 * 1 2 3 31 31 H 1.08996 * 109.46914 * 177.87380 * 1 2 3 32 32 H 1.07996 * 120.00619 * 359.97438 * 4 3 2 33 33 H 1.08006 * 119.99567 * 180.24952 * 5 4 3 34 34 H 1.08000 * 120.00144 * 179.79307 * 6 5 4 35 35 H 1.07998 * 119.99615 * 180.02562 * 7 6 5 36 36 H 1.07998 * 119.99532 * 179.97438 * 8 7 6 37 37 H 0.96994 * 126.69422 * 61.44967 * 9 2 1 38 38 H 1.07995 * 126.06446 * 0.02562 * 14 13 12 39 39 H 1.07995 * 126.07485 * 180.02562 * 15 14 13 40 40 H 1.08999 * 109.47066 * 244.99566 * 17 16 15 41 41 H 1.09000 * 109.47374 * 4.99704 * 17 16 15 42 42 H 0.97001 * 119.99954 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0587 1.4113 0.0000 4 6 2.3511 2.0398 1.1960 5 6 2.8401 3.3328 1.1956 6 6 3.0277 4.0006 0.0000 7 6 2.7307 3.3736 -1.1958 8 6 2.2457 2.0792 -1.1957 9 7 2.0484 -0.7510 -1.1564 10 6 2.7600 -1.7791 -0.6600 11 8 3.3285 -2.6027 -1.3497 12 7 2.7711 -1.7942 0.6778 13 6 3.4389 -2.7579 1.4502 14 6 3.3963 -2.8674 2.8490 15 6 4.1681 -3.9189 3.2067 16 7 4.6820 -4.4569 2.0806 17 6 5.5746 -5.6165 2.0104 18 6 4.9813 -6.6523 1.0904 19 1 4.0339 -6.4656 0.6067 20 6 5.6481 -7.8381 0.8662 21 7 5.1302 -8.7421 0.0638 22 14 7.2872 -8.1605 1.7023 23 1 7.0538 -8.8265 3.0090 24 1 8.1182 -9.0390 0.8404 25 1 7.9925 -6.8724 1.9223 26 7 4.2071 -3.7168 0.9902 27 6 2.0630 -0.7695 1.1924 28 8 1.8920 -0.5134 2.3651 29 1 -0.3633 0.4805 0.9085 30 1 -0.3632 0.5465 -0.8703 31 1 -0.3633 -1.0269 -0.0381 32 1 2.2004 1.5197 2.1304 33 1 3.0724 3.8224 2.1299 34 1 3.4066 5.0119 0.0000 35 1 2.8776 3.8953 -2.1300 36 1 2.0133 1.5896 -2.1298 37 1 1.9044 -0.5447 -2.0932 38 1 2.8445 -2.2264 3.5204 39 1 4.3422 -4.2662 4.2143 40 1 6.5462 -5.3043 1.6275 41 1 5.6962 -6.0422 3.0064 42 1 5.5994 -9.5762 -0.0942 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000804243815.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:43 Heat of formation + Delta-G solvation = 89.112224 kcal Electronic energy + Delta-G solvation = -29036.117212 eV Core-core repulsion = 24984.954631 eV Total energy + Delta-G solvation = -4051.162581 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.88202 -40.52339 -39.43958 -38.61072 -36.41138 -35.34478 -33.43367 -32.03673 -31.40944 -31.10267 -29.71852 -29.61534 -27.57162 -25.40532 -24.01170 -23.28580 -22.88354 -21.80240 -21.17571 -20.00342 -19.40611 -18.16510 -17.51616 -16.99001 -16.71997 -16.56806 -16.17011 -15.87262 -15.33777 -15.27021 -14.79066 -14.54434 -14.36695 -14.23168 -13.91657 -13.69253 -13.43237 -13.27998 -12.85816 -12.80564 -12.72189 -12.57649 -12.45259 -12.20649 -11.70081 -11.50731 -11.20208 -10.82927 -10.76724 -10.70581 -10.35158 -10.09634 -9.85574 -9.68249 -9.55131 -9.25339 -9.15843 -8.74684 -8.46569 -7.84436 -6.20521 -4.23314 0.88379 1.06587 1.46892 1.89797 2.45194 2.81581 2.84443 3.16370 3.23632 3.24056 3.40257 3.48986 3.61969 3.71376 3.98127 4.24641 4.44844 4.59487 4.69235 4.82255 4.92650 5.06133 5.10982 5.16472 5.21173 5.22879 5.29549 5.45298 5.54793 5.64619 5.72103 5.83480 6.09483 6.10361 6.13733 6.18867 6.30726 6.35997 6.59913 6.61197 6.67461 6.93153 7.06367 7.29227 7.34992 7.66819 8.17463 8.30476 8.40296 8.90250 9.33220 10.92282 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.020459 B = 0.002766 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.234881 B =10121.455419 C =10420.784099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.172 3.828 3 C -0.093 4.093 4 C -0.108 4.108 5 C -0.115 4.115 6 C -0.113 4.113 7 C -0.120 4.120 8 C -0.096 4.096 9 N -0.721 5.721 10 C 0.695 3.305 11 O -0.491 6.491 12 N -0.482 5.482 13 C 0.246 3.754 14 C -0.280 4.280 15 C 0.060 3.940 16 N -0.314 5.314 17 C 0.230 3.770 18 C -0.536 4.536 19 H 0.087 0.913 20 C 0.077 3.923 21 N -0.886 5.886 22 Si 0.872 3.128 23 H -0.271 1.271 24 H -0.279 1.279 25 H -0.264 1.264 26 N -0.239 5.239 27 C 0.542 3.458 28 O -0.450 6.450 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.142 0.858 33 H 0.127 0.873 34 H 0.124 0.876 35 H 0.126 0.874 36 H 0.123 0.877 37 H 0.439 0.561 38 H 0.154 0.846 39 H 0.176 0.824 40 H 0.045 0.955 41 H 0.052 0.948 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.384 25.741 1.917 27.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.081 3.919 3 C -0.095 4.095 4 C -0.126 4.126 5 C -0.133 4.133 6 C -0.131 4.131 7 C -0.138 4.138 8 C -0.114 4.114 9 N -0.387 5.387 10 C 0.395 3.605 11 O -0.358 6.358 12 N -0.224 5.224 13 C -0.006 4.006 14 C -0.312 4.312 15 C -0.089 4.089 16 N -0.096 5.096 17 C 0.112 3.888 18 C -0.574 4.574 19 H 0.105 0.895 20 C -0.127 4.127 21 N -0.523 5.523 22 Si 0.698 3.302 23 H -0.197 1.197 24 H -0.205 1.205 25 H -0.188 1.188 26 N -0.068 5.068 27 C 0.327 3.673 28 O -0.318 6.318 29 H 0.105 0.895 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.160 0.840 33 H 0.145 0.855 34 H 0.142 0.858 35 H 0.144 0.856 36 H 0.141 0.859 37 H 0.285 0.715 38 H 0.172 0.828 39 H 0.193 0.807 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.477 24.463 1.078 25.603 hybrid contribution 0.458 0.089 0.577 0.742 sum -7.020 24.552 1.656 25.589 Atomic orbital electron populations 1.22042 0.89060 1.04286 1.04777 1.20075 0.97168 0.90043 0.84607 1.19382 1.02333 0.93048 0.94718 1.21462 0.97302 0.95432 0.98384 1.21179 0.99155 0.94586 0.98423 1.21270 0.99157 1.00029 0.92625 1.21123 0.99482 0.94813 0.98377 1.20819 0.98934 0.94743 0.96924 1.45576 1.55868 1.28713 1.08593 1.15845 0.80488 0.82700 0.81486 1.91167 1.45434 1.39381 1.59850 1.42877 1.46685 1.25570 1.07285 1.18782 0.99546 0.92653 0.89582 1.21059 1.12319 1.05527 0.92258 1.22510 0.97539 0.95276 0.93625 1.48961 1.35307 1.23455 1.01911 1.20145 0.88537 0.80839 0.99290 1.21091 1.09268 0.99219 1.27801 0.89510 1.24821 0.97491 0.95556 0.94794 1.69872 1.38933 1.07835 1.35615 0.86916 0.84164 0.79109 0.79967 1.19691 1.20482 1.18848 1.77864 1.14438 1.05010 1.09502 1.20529 0.77212 0.79657 0.89860 1.90705 1.56443 1.68277 1.16390 0.89465 0.89909 0.90578 0.83997 0.85528 0.85819 0.85622 0.85899 0.71532 0.82825 0.80671 0.93712 0.93017 0.92156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 8.96 37.16 0.33 -0.76 16 2 C 0.17 1.81 1.16 -133.24 -0.15 1.66 16 3 C -0.09 -0.90 4.89 -104.63 -0.51 -1.41 16 4 C -0.11 -1.07 9.18 -39.58 -0.36 -1.43 16 5 C -0.12 -0.96 10.05 -39.58 -0.40 -1.36 16 6 C -0.11 -0.83 10.05 -39.58 -0.40 -1.22 16 7 C -0.12 -0.87 10.05 -39.58 -0.40 -1.27 16 8 C -0.10 -0.77 9.35 -39.59 -0.37 -1.14 16 9 N -0.72 -8.27 5.37 -54.02 -0.29 -8.56 16 10 C 0.70 12.16 8.59 -88.01 -0.76 11.41 16 11 O -0.49 -10.96 16.83 5.33 0.09 -10.87 16 12 N -0.48 -8.61 2.83 -65.79 -0.19 -8.80 16 13 C 0.25 5.18 7.67 -154.18 -1.18 4.00 16 14 C -0.28 -5.17 9.98 -39.84 -0.40 -5.57 16 15 C 0.06 1.10 11.44 -17.24 -0.20 0.90 16 16 N -0.31 -7.20 3.67 -62.56 -0.23 -7.43 16 17 C 0.23 5.52 5.33 -5.19 -0.03 5.49 16 18 C -0.54 -15.49 9.78 -34.44 -0.34 -15.83 16 19 H 0.09 2.87 8.06 -52.49 -0.42 2.45 16 20 C 0.08 2.21 5.47 -17.82 -0.10 2.12 16 21 N -0.89 -27.11 13.96 55.43 0.77 -26.33 16 22 Si 0.87 20.36 27.47 -169.99 -4.67 15.69 16 23 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 25 H -0.26 -5.82 6.54 56.52 0.37 -5.45 16 26 N -0.24 -5.91 11.33 31.48 0.36 -5.55 16 27 C 0.54 7.77 6.41 -10.55 -0.07 7.71 16 28 O -0.45 -6.64 13.75 5.59 0.08 -6.57 16 29 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.14 1.52 5.61 -52.49 -0.29 1.23 16 33 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 34 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 35 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 36 H 0.12 0.73 7.12 -52.49 -0.37 0.36 16 37 H 0.44 3.64 8.20 -40.82 -0.33 3.30 16 38 H 0.15 2.51 6.69 -52.49 -0.35 2.16 16 39 H 0.18 2.41 8.06 -52.49 -0.42 1.99 16 40 H 0.05 1.08 7.20 -51.93 -0.37 0.70 16 41 H 0.05 1.09 7.50 -51.93 -0.39 0.70 16 42 H 0.27 7.58 8.31 -40.82 -0.34 7.25 16 LS Contribution 359.65 15.07 5.42 5.42 Total: -1.00 -36.97 359.65 -8.65 -45.62 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -4.67 Total: 4.10 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: -5.32 Total: 3.29 kcal Atomic # 7 Polarization: -57.10 SS G_CDS: 0.42 Total: -56.68 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: 0.17 Total: -17.44 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -4.67 Total: 15.69 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -36.97 -8.65 -45.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804243815.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.729 kcal (2) G-P(sol) polarization free energy of solvation -36.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds