Wall clock time and date at job start Sat Apr 11 2020 05:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50702 * 110.53387 * 2 1 4 4 C 1.38233 * 119.99831 * 92.55653 * 3 2 1 5 5 C 1.38239 * 119.99227 * 179.78669 * 4 3 2 6 6 C 1.38232 * 120.00674 * 0.46358 * 5 4 3 7 7 C 1.38244 * 119.99485 * 359.76733 * 6 5 4 8 8 C 1.38231 * 119.99820 * 0.02562 * 7 6 5 9 9 N 1.47307 * 110.60064 * 237.00173 * 2 1 3 10 10 C 1.34534 * 106.61730 * 241.47479 * 9 2 1 11 11 O 1.21543 * 123.76763 * 179.97438 * 10 9 2 12 12 N 1.33790 * 112.46010 * 0.02562 * 10 9 2 13 13 C 1.40397 * 124.17819 * 180.02562 * 12 10 9 14 14 C 1.40379 * 125.96812 * 184.94397 * 13 12 10 15 15 C 1.35239 * 107.87320 * 179.97438 * 14 13 12 16 16 N 1.34971 * 107.85180 * 0.02562 * 15 14 13 17 17 C 1.46502 * 125.97841 * 180.02562 * 16 15 14 18 18 C 1.50706 * 109.47280 * 124.99749 * 17 16 15 19 19 H 1.07998 * 119.99723 * 359.97438 * 18 17 16 20 20 C 1.37877 * 119.99957 * 179.97438 * 18 17 16 21 21 N 1.31507 * 119.99991 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 119.99789 * 359.97438 * 20 18 17 23 23 H 1.48507 * 109.46854 * 90.00259 * 22 20 18 24 24 H 1.48497 * 109.47051 * 209.99752 * 22 20 18 25 25 H 1.48495 * 109.47520 * 330.00068 * 22 20 18 26 26 N 1.31198 * 125.97072 * 4.63103 * 13 12 10 27 27 C 1.34771 * 111.64263 * 359.97438 * 12 10 9 28 28 O 1.21242 * 127.15589 * 180.26884 * 27 12 10 29 29 H 1.09003 * 109.46902 * 297.87385 * 1 2 3 30 30 H 1.08996 * 109.46698 * 57.86988 * 1 2 3 31 31 H 1.08996 * 109.46914 * 177.87380 * 1 2 3 32 32 H 1.07996 * 120.00619 * 359.97438 * 4 3 2 33 33 H 1.08006 * 119.99567 * 180.24952 * 5 4 3 34 34 H 1.08000 * 120.00144 * 179.79307 * 6 5 4 35 35 H 1.07998 * 119.99615 * 180.02562 * 7 6 5 36 36 H 1.07998 * 119.99532 * 179.97438 * 8 7 6 37 37 H 0.96994 * 126.69422 * 61.44967 * 9 2 1 38 38 H 1.07995 * 126.06446 * 0.02562 * 14 13 12 39 39 H 1.07995 * 126.07485 * 180.02562 * 15 14 13 40 40 H 1.08999 * 109.47066 * 244.99566 * 17 16 15 41 41 H 1.09000 * 109.47374 * 4.99704 * 17 16 15 42 42 H 0.97001 * 119.99954 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0587 1.4113 0.0000 4 6 2.3511 2.0398 1.1960 5 6 2.8401 3.3328 1.1956 6 6 3.0277 4.0006 0.0000 7 6 2.7307 3.3736 -1.1958 8 6 2.2457 2.0792 -1.1957 9 7 2.0484 -0.7510 -1.1564 10 6 2.7600 -1.7791 -0.6600 11 8 3.3285 -2.6027 -1.3497 12 7 2.7711 -1.7942 0.6778 13 6 3.4389 -2.7579 1.4502 14 6 3.3963 -2.8674 2.8490 15 6 4.1681 -3.9189 3.2067 16 7 4.6820 -4.4569 2.0806 17 6 5.5746 -5.6165 2.0104 18 6 4.9813 -6.6523 1.0904 19 1 4.0339 -6.4656 0.6067 20 6 5.6481 -7.8381 0.8662 21 7 5.1302 -8.7421 0.0638 22 14 7.2872 -8.1605 1.7023 23 1 7.0538 -8.8265 3.0090 24 1 8.1182 -9.0390 0.8404 25 1 7.9925 -6.8724 1.9223 26 7 4.2071 -3.7168 0.9902 27 6 2.0630 -0.7695 1.1924 28 8 1.8920 -0.5134 2.3651 29 1 -0.3633 0.4805 0.9085 30 1 -0.3632 0.5465 -0.8703 31 1 -0.3633 -1.0269 -0.0381 32 1 2.2004 1.5197 2.1304 33 1 3.0724 3.8224 2.1299 34 1 3.4066 5.0119 0.0000 35 1 2.8776 3.8953 -2.1300 36 1 2.0133 1.5896 -2.1298 37 1 1.9044 -0.5447 -2.0932 38 1 2.8445 -2.2264 3.5204 39 1 4.3422 -4.2662 4.2143 40 1 6.5462 -5.3043 1.6275 41 1 5.6962 -6.0422 3.0064 42 1 5.5994 -9.5762 -0.0942 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000804243815.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:42 Heat of formation + Delta-G solvation = 63.302968 kcal Electronic energy + Delta-G solvation = -29037.236385 eV Core-core repulsion = 24984.954631 eV Total energy + Delta-G solvation = -4052.281754 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.08888 -42.03951 -40.34036 -39.73222 -37.61788 -36.68245 -35.37011 -33.47899 -32.66333 -31.81776 -31.19212 -30.40410 -29.38920 -26.50316 -25.49135 -24.26280 -23.90363 -23.19924 -22.26093 -21.30180 -20.80755 -19.37243 -19.05711 -18.54861 -18.15405 -17.69254 -17.26748 -16.95951 -16.79827 -16.31937 -16.24262 -15.63636 -15.56772 -15.33789 -15.15967 -14.90904 -14.54996 -14.46682 -14.22836 -14.13308 -13.91149 -13.57421 -13.50449 -13.19504 -13.03918 -12.55773 -12.49216 -12.37640 -12.24075 -11.98789 -11.85079 -11.83115 -11.56204 -11.20027 -10.88919 -10.78890 -10.07592 -9.86840 -9.81320 -9.45458 -8.39337 -6.50781 0.17135 0.34332 0.45973 0.58764 0.89714 1.34061 1.38359 1.39806 1.48417 1.77153 2.02671 2.18111 2.27637 2.59018 2.81426 2.92709 3.17382 3.57035 3.71509 3.82910 3.98888 4.12450 4.15140 4.27235 4.33053 4.54511 4.56819 4.58102 4.60629 4.65828 4.69193 4.79768 4.89271 4.95225 5.05399 5.12390 5.19101 5.43475 5.50087 5.51968 5.59457 5.64413 5.79912 5.91646 6.02464 6.12281 6.31297 6.54481 6.77172 6.92995 7.11632 8.78589 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.020459 B = 0.002766 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.234881 B =10121.455419 C =10420.784099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.185 3.815 3 C -0.107 4.107 4 C -0.126 4.126 5 C -0.123 4.123 6 C -0.113 4.113 7 C -0.121 4.121 8 C -0.100 4.100 9 N -0.691 5.691 10 C 0.690 3.310 11 O -0.553 6.553 12 N -0.495 5.495 13 C 0.242 3.758 14 C -0.281 4.281 15 C 0.075 3.925 16 N -0.340 5.340 17 C 0.238 3.762 18 C -0.551 4.551 19 H 0.019 0.981 20 C 0.012 3.988 21 N -0.944 5.944 22 Si 0.960 3.040 23 H -0.246 1.246 24 H -0.282 1.282 25 H -0.239 1.239 26 N -0.311 5.311 27 C 0.535 3.465 28 O -0.454 6.454 29 H 0.096 0.904 30 H 0.114 0.886 31 H 0.069 0.931 32 H 0.128 0.872 33 H 0.141 0.859 34 H 0.149 0.851 35 H 0.151 0.849 36 H 0.143 0.857 37 H 0.455 0.545 38 H 0.177 0.823 39 H 0.228 0.772 40 H 0.045 0.955 41 H 0.094 0.906 42 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.781 28.538 3.663 29.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.095 3.905 3 C -0.108 4.108 4 C -0.145 4.145 5 C -0.141 4.141 6 C -0.130 4.130 7 C -0.139 4.139 8 C -0.118 4.118 9 N -0.358 5.358 10 C 0.390 3.610 11 O -0.425 6.425 12 N -0.238 5.238 13 C -0.011 4.011 14 C -0.312 4.312 15 C -0.072 4.072 16 N -0.122 5.122 17 C 0.119 3.881 18 C -0.589 4.589 19 H 0.038 0.962 20 C -0.187 4.187 21 N -0.582 5.582 22 Si 0.780 3.220 23 H -0.170 1.170 24 H -0.207 1.207 25 H -0.162 1.162 26 N -0.140 5.140 27 C 0.323 3.677 28 O -0.322 6.322 29 H 0.115 0.885 30 H 0.132 0.868 31 H 0.088 0.912 32 H 0.145 0.855 33 H 0.159 0.841 34 H 0.166 0.834 35 H 0.169 0.831 36 H 0.161 0.839 37 H 0.304 0.696 38 H 0.194 0.806 39 H 0.245 0.755 40 H 0.063 0.937 41 H 0.112 0.888 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.946 27.359 2.840 28.369 hybrid contribution 0.112 -0.606 0.017 0.617 sum -6.834 26.752 2.857 27.759 Atomic orbital electron populations 1.22134 0.86357 1.04589 1.06797 1.20224 0.98794 0.89781 0.81707 1.19320 1.03816 0.92172 0.95540 1.21449 0.98685 0.96409 0.97933 1.21412 0.98853 0.94079 0.99758 1.21627 0.98158 1.01068 0.92197 1.21492 0.98362 0.94517 0.99520 1.21086 0.98547 0.95252 0.96944 1.45457 1.53793 1.26697 1.09855 1.16108 0.80471 0.83150 0.81289 1.91120 1.48328 1.42016 1.61068 1.43231 1.47098 1.25899 1.07579 1.19313 0.98476 0.92167 0.91143 1.21383 1.12482 1.05996 0.91294 1.23379 0.95383 0.94037 0.94442 1.48841 1.36623 1.23883 1.02899 1.19990 0.88242 0.80022 0.99870 1.21219 1.07368 1.01432 1.28885 0.96232 1.26008 1.02659 0.94668 0.95333 1.70068 1.41523 1.08771 1.37887 0.85555 0.77250 0.79978 0.79184 1.17002 1.20716 1.16205 1.77766 1.17250 1.07232 1.11727 1.21308 0.76429 0.78939 0.91035 1.90685 1.56376 1.68135 1.17002 0.88497 0.86758 0.91213 0.85450 0.84101 0.83375 0.83106 0.83946 0.69599 0.80611 0.75548 0.93729 0.88815 0.91821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 8.96 71.98 0.65 -1.24 16 2 C 0.19 3.71 1.16 2.24 0.00 3.71 16 3 C -0.11 -1.90 4.89 -19.87 -0.10 -2.00 16 4 C -0.13 -2.37 9.18 22.27 0.20 -2.16 16 5 C -0.12 -1.81 10.05 22.27 0.22 -1.58 16 6 C -0.11 -1.32 10.05 22.27 0.22 -1.09 16 7 C -0.12 -1.37 10.05 22.27 0.22 -1.15 16 8 C -0.10 -1.34 9.35 22.27 0.21 -1.13 16 9 N -0.69 -15.70 5.37 -443.23 -2.38 -18.08 16 10 C 0.69 25.34 8.59 179.44 1.54 26.88 16 11 O -0.55 -26.58 16.83 -3.85 -0.06 -26.65 16 12 N -0.50 -18.36 2.83 -599.29 -1.70 -20.06 16 13 C 0.24 10.57 7.67 133.24 1.02 11.59 16 14 C -0.28 -10.23 9.98 22.10 0.22 -10.01 16 15 C 0.08 2.67 11.44 83.52 0.96 3.62 16 16 N -0.34 -15.82 3.67 -351.83 -1.29 -17.11 16 17 C 0.24 11.36 5.33 85.63 0.46 11.82 16 18 C -0.55 -33.36 9.78 25.60 0.25 -33.11 16 19 H 0.02 1.40 8.06 -2.91 -0.02 1.37 16 20 C 0.01 0.70 5.47 84.66 0.46 1.16 16 21 N -0.94 -60.43 13.96 21.45 0.30 -60.13 16 22 Si 0.96 41.74 27.47 68.60 1.88 43.62 16 23 H -0.25 -9.70 7.11 99.48 0.71 -8.99 16 24 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 25 H -0.24 -9.37 6.54 99.48 0.65 -8.72 16 26 N -0.31 -16.21 11.33 -54.32 -0.62 -16.83 16 27 C 0.54 15.39 6.41 87.94 0.56 15.95 16 28 O -0.45 -13.25 13.75 -2.91 -0.04 -13.29 16 29 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.13 2.70 5.61 -2.91 -0.02 2.68 16 33 H 0.14 1.54 8.06 -2.91 -0.02 1.52 16 34 H 0.15 0.97 8.06 -2.91 -0.02 0.94 16 35 H 0.15 0.93 8.06 -2.91 -0.02 0.91 16 36 H 0.14 1.25 7.12 -2.91 -0.02 1.23 16 37 H 0.46 7.10 8.20 -92.71 -0.76 6.34 16 38 H 0.18 5.49 6.69 -2.91 -0.02 5.47 16 39 H 0.23 5.32 8.06 -2.91 -0.02 5.29 16 40 H 0.04 2.11 7.20 -2.39 -0.02 2.09 16 41 H 0.09 3.67 7.50 -2.39 -0.02 3.66 16 42 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 Total: -1.00 -90.23 359.65 3.47 -86.77 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: 0.27 Total: 20.50 kcal Atomic # 6 Polarization: 14.15 SS G_CDS: 7.11 Total: 21.26 kcal Atomic # 7 Polarization: -126.52 SS G_CDS: -5.69 Total: -132.21 kcal Atomic # 8 Polarization: -39.83 SS G_CDS: -0.10 Total: -39.94 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 1.88 Total: 43.62 kcal Total: -90.23 3.47 -86.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804243815.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.069 kcal (2) G-P(sol) polarization free energy of solvation -90.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds