Wall clock time and date at job start Sat Apr 11 2020 05:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 S 1.75458 * 124.58305 * 2 1 4 4 C 1.70436 * 92.54138 * 179.97438 * 3 2 1 5 5 N 1.38607 * 124.66449 * 179.97438 * 4 3 2 6 6 C 1.34785 * 119.99578 * 0.02562 * 5 4 3 7 7 O 1.21278 * 119.99888 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.99880 * 179.97438 * 6 5 4 9 9 N 1.46891 * 109.47203 * 179.97438 * 8 6 5 10 10 C 1.46900 * 110.99859 * 66.04864 * 9 8 6 11 11 C 1.46902 * 111.00371 * 190.00018 * 9 8 6 12 12 H 1.09000 * 109.47263 * 300.00454 * 11 9 8 13 13 C 1.53006 * 109.46626 * 60.00148 * 11 9 8 14 14 C 1.50697 * 109.47181 * 180.02562 * 11 9 8 15 15 H 1.07994 * 120.00496 * 0.02562 * 14 11 9 16 16 C 1.37887 * 119.99690 * 180.02562 * 14 11 9 17 17 N 1.31507 * 120.00093 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 119.99676 * 180.02562 * 16 14 11 19 19 H 1.48508 * 109.47028 * 90.00202 * 18 16 14 20 20 H 1.48493 * 109.46961 * 209.99772 * 18 16 14 21 21 H 1.48498 * 109.47538 * 330.00225 * 18 16 14 22 22 C 1.37192 * 110.67778 * 0.24302 * 4 3 2 23 23 C 1.46431 * 123.61087 * 179.75600 * 22 4 3 24 24 O 1.21645 * 119.99687 * 90.02477 * 23 22 4 25 25 O 1.34879 * 120.00484 * 270.02632 * 23 22 4 26 26 C 1.32505 * 124.58206 * 179.97438 * 2 1 3 27 27 C 1.50704 * 123.41702 * 0.02562 * 26 2 1 28 28 H 1.08994 * 109.47097 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.46762 * 120.02199 * 1 2 3 30 30 H 1.08997 * 109.47229 * 240.02386 * 1 2 3 31 31 H 0.97000 * 120.00923 * 180.02562 * 5 4 3 32 32 H 1.09007 * 109.46876 * 60.00192 * 8 6 5 33 33 H 1.09002 * 109.47527 * 300.00305 * 8 6 5 34 34 H 1.09007 * 109.47437 * 183.95227 * 10 9 8 35 35 H 1.09004 * 109.47505 * 303.95311 * 10 9 8 36 36 H 1.08998 * 109.47445 * 63.95753 * 10 9 8 37 37 H 1.09001 * 109.47002 * 179.97438 * 13 11 9 38 38 H 1.08993 * 109.46955 * 300.00347 * 13 11 9 39 39 H 1.09000 * 109.47050 * 60.00176 * 13 11 9 40 40 H 0.96999 * 120.00118 * 179.97438 * 17 16 14 41 41 H 0.96691 * 117.00633 * 180.02562 * 25 23 22 42 42 H 1.08992 * 109.47237 * 90.02274 * 27 26 2 43 43 H 1.09000 * 109.46975 * 210.02801 * 27 26 2 44 44 H 1.08999 * 109.46628 * 330.02738 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 16 2.5030 1.4445 0.0000 4 6 3.9477 0.5403 0.0008 5 7 5.2208 1.0884 0.0006 6 6 5.3781 2.4271 0.0003 7 8 4.4057 3.1519 0.0006 8 6 6.7622 3.0231 0.0007 9 7 6.6642 4.4887 -0.0004 10 6 6.0729 4.9777 1.2523 11 6 7.9768 5.1040 -0.2382 12 1 8.6682 4.8005 0.5479 13 6 8.5156 4.6474 -1.5955 14 6 7.8369 6.6045 -0.2317 15 1 6.8697 7.0559 -0.0669 16 6 8.9437 7.4010 -0.4361 17 7 10.1215 6.8513 -0.6362 18 14 8.7703 9.2609 -0.4273 19 1 8.9675 9.7699 0.9538 20 1 9.7916 9.8574 -1.3251 21 1 7.4141 9.6340 -0.9034 22 6 3.6774 -0.8047 -0.0044 23 6 4.7133 -1.8396 -0.0104 24 8 5.1448 -2.2742 1.0406 25 8 5.1890 -2.3111 -1.1811 26 6 2.2592 -1.0909 0.0005 27 6 1.6946 -2.4882 0.0006 28 1 -0.3633 1.0276 -0.0005 29 1 -0.3633 -0.5142 -0.8898 30 1 -0.3633 -0.5134 0.8902 31 1 5.9985 0.5088 0.0007 32 1 7.2995 2.6946 -0.8891 33 1 7.2989 2.6951 0.8909 34 1 5.9472 6.0591 1.1970 35 1 5.1018 4.5064 1.4040 36 1 6.7308 4.7306 2.0854 37 1 9.4894 5.1043 -1.7722 38 1 8.6168 3.5622 -1.5998 39 1 7.8243 4.9509 -2.3816 40 1 10.9000 7.4116 -0.7804 41 1 5.8718 -2.9940 -1.1345 42 1 1.5592 -2.8255 -1.0270 43 1 2.3832 -3.1583 0.5152 44 1 0.7329 -2.4914 0.5136 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833034080.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:51 Heat of formation + Delta-G solvation = -85.692832 kcal Electronic energy + Delta-G solvation = -27302.057767 eV Core-core repulsion = 23346.466270 eV Total energy + Delta-G solvation = -3955.591497 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.78468 -40.07439 -38.05261 -36.78563 -36.22530 -35.27148 -32.85002 -31.70665 -29.72659 -29.33952 -28.27416 -26.22107 -25.30076 -24.41402 -23.37522 -21.35932 -21.30920 -19.68630 -19.01889 -18.38077 -17.96027 -17.48703 -16.50839 -16.33058 -15.90619 -15.48642 -15.10154 -14.97832 -14.53251 -14.28000 -13.98316 -13.88891 -13.81056 -13.44265 -13.00811 -12.77413 -12.74034 -12.67335 -12.40523 -12.30897 -11.99261 -11.77379 -11.73732 -11.32377 -11.26065 -11.03707 -10.89580 -10.75639 -10.73042 -10.54001 -10.24167 -10.17087 -10.01554 -9.53168 -8.97782 -8.49184 -8.42637 -8.10956 -7.34592 -6.07982 -4.12106 0.74755 1.16946 1.69311 1.95503 2.03928 2.58079 2.68349 3.05621 3.28153 3.34953 3.39871 4.36147 4.60893 4.70615 4.76492 4.88949 4.98804 5.20911 5.23544 5.24946 5.30160 5.42590 5.43695 5.50634 5.52934 5.61428 5.68324 5.84453 6.08409 6.13525 6.21561 6.30264 6.33489 6.67164 6.77129 6.88186 6.91964 7.02436 7.36583 7.54823 7.61146 7.76114 7.85963 8.06611 8.19725 8.45422 8.93904 9.53142 10.99203 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.020119 B = 0.002619 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.365820 B =10690.301495 C =11709.431257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.263 4.263 3 S 0.317 5.683 4 C 0.066 3.934 5 N -0.641 5.641 6 C 0.509 3.491 7 O -0.475 6.475 8 C 0.037 3.963 9 N -0.519 5.519 10 C 0.032 3.968 11 C 0.213 3.787 12 H 0.002 0.998 13 C -0.136 4.136 14 C -0.503 4.503 15 H 0.066 0.934 16 C 0.059 3.941 17 N -0.894 5.894 18 Si 0.899 3.101 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.273 1.273 22 C -0.214 4.214 23 C 0.558 3.442 24 O -0.504 6.504 25 O -0.508 6.508 26 C -0.049 4.049 27 C -0.095 4.095 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.416 0.584 32 H 0.112 0.888 33 H 0.060 0.940 34 H 0.079 0.921 35 H 0.059 0.941 36 H 0.009 0.991 37 H 0.089 0.911 38 H 0.006 0.994 39 H 0.037 0.963 40 H 0.261 0.739 41 H 0.410 0.590 42 H 0.073 0.927 43 H 0.062 0.938 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.432 -18.862 0.012 23.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.380 4.380 3 S 0.581 5.419 4 C -0.153 4.153 5 N -0.286 5.286 6 C 0.297 3.703 7 O -0.347 6.347 8 C -0.094 4.094 9 N -0.244 5.244 10 C -0.117 4.117 11 C 0.108 3.892 12 H 0.019 0.981 13 C -0.194 4.194 14 C -0.542 4.542 15 H 0.084 0.916 16 C -0.142 4.142 17 N -0.533 5.533 18 Si 0.726 3.274 19 H -0.208 1.208 20 H -0.212 1.212 21 H -0.197 1.197 22 C -0.233 4.233 23 C 0.399 3.601 24 O -0.391 6.391 25 O -0.319 6.319 26 C -0.060 4.060 27 C -0.154 4.154 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.252 0.748 32 H 0.130 0.870 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.078 0.922 36 H 0.027 0.973 37 H 0.107 0.893 38 H 0.025 0.975 39 H 0.057 0.943 40 H 0.071 0.929 41 H 0.268 0.732 42 H 0.092 0.908 43 H 0.081 0.919 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.647 -16.284 -0.138 22.583 hybrid contribution 2.089 -1.716 0.664 2.783 sum -13.558 -17.999 0.526 22.540 Atomic orbital electron populations 1.20196 0.87620 1.02700 1.02513 1.24655 1.01122 0.98540 1.13720 1.84400 0.87310 1.01353 1.68837 1.21905 0.93578 0.95652 1.04134 1.43174 1.05105 1.08512 1.71767 1.21756 0.94054 0.79876 0.74609 1.90579 1.40786 1.57911 1.45460 1.21998 0.90125 0.93826 1.03491 1.61949 1.28064 0.99703 1.34668 1.22374 0.97750 1.02580 0.88955 1.19336 0.82169 0.94257 0.93482 0.98080 1.21908 1.03515 0.95466 0.98549 1.21116 0.94655 0.89769 1.48644 0.91596 1.24924 0.95173 0.98972 0.95126 1.69873 0.99034 1.35165 1.49268 0.86481 0.77971 0.85069 0.77838 1.20750 1.21232 1.19735 1.18531 0.92736 0.89033 1.22969 1.20144 0.79342 0.79653 0.80953 1.90957 1.57561 1.57395 1.33234 1.84785 1.55915 1.55995 1.35247 1.19034 0.88569 0.96364 1.02015 1.20489 1.01022 0.91412 1.02439 0.91484 0.90920 0.90942 0.74766 0.86996 0.92200 0.90199 0.92200 0.97286 0.89269 0.97485 0.94340 0.92897 0.73224 0.90791 0.91937 0.90808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.54 9.44 36.01 0.34 -0.20 16 2 C -0.26 -2.82 6.42 -36.22 -0.23 -3.05 16 3 S 0.32 4.05 19.92 -107.50 -2.14 1.91 16 4 C 0.07 0.89 6.99 -14.87 -0.10 0.79 16 5 N -0.64 -8.46 5.37 -11.61 -0.06 -8.53 16 6 C 0.51 8.01 7.48 -10.98 -0.08 7.92 16 7 O -0.48 -8.55 11.75 5.56 0.07 -8.49 16 8 C 0.04 0.62 5.26 -4.98 -0.03 0.59 16 9 N -0.52 -10.95 4.36 -237.73 -1.04 -11.98 16 10 C 0.03 0.64 8.88 60.06 0.53 1.17 16 11 C 0.21 5.17 2.06 -68.86 -0.14 5.03 16 12 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 13 C -0.14 -3.15 8.77 37.16 0.33 -2.83 16 14 C -0.50 -13.50 7.93 -34.44 -0.27 -13.77 16 15 H 0.07 1.79 6.39 -52.49 -0.34 1.45 16 16 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 17 N -0.89 -24.82 11.32 55.43 0.63 -24.19 16 18 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 22 C -0.21 -2.73 5.87 -104.44 -0.61 -3.35 16 23 C 0.56 6.73 6.61 34.03 0.22 6.95 16 24 O -0.50 -7.25 17.90 -19.38 -0.35 -7.60 16 25 O -0.51 -4.62 13.44 -40.98 -0.55 -5.17 16 26 C -0.05 -0.55 6.00 -103.99 -0.62 -1.18 16 27 C -0.09 -0.80 9.67 36.01 0.35 -0.45 16 28 H 0.07 0.46 8.13 -51.93 -0.42 0.04 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.46 7.93 -51.93 -0.41 0.05 16 31 H 0.42 4.55 8.16 -40.82 -0.33 4.22 16 32 H 0.11 1.75 5.83 -51.92 -0.30 1.45 16 33 H 0.06 0.92 8.12 -51.93 -0.42 0.50 16 34 H 0.08 1.72 6.23 -51.93 -0.32 1.39 16 35 H 0.06 1.14 5.82 -51.93 -0.30 0.83 16 36 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 37 H 0.09 2.28 6.07 -51.93 -0.32 1.96 16 38 H 0.01 0.13 6.20 -51.93 -0.32 -0.20 16 39 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.26 6.93 8.31 -40.82 -0.34 6.60 16 41 H 0.41 1.73 9.11 45.56 0.42 2.15 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.56 7.70 -51.93 -0.40 0.16 16 44 H 0.07 0.50 7.36 -51.93 -0.38 0.12 16 LS Contribution 373.70 15.07 5.63 5.63 Total: -1.00 -32.56 373.70 -8.36 -40.92 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -5.11 Total: 2.33 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -0.42 Total: -0.86 kcal Atomic # 7 Polarization: -44.23 SS G_CDS: -0.47 Total: -44.70 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -0.83 Total: -21.26 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: 4.05 SS G_CDS: -2.14 Total: 1.91 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.56 -8.36 -40.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833034080.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.773 kcal (2) G-P(sol) polarization free energy of solvation -32.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds