Wall clock time and date at job start Sat Apr 11 2020 05:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 S 1.75458 * 124.58305 * 2 1 4 4 C 1.70436 * 92.54138 * 179.97438 * 3 2 1 5 5 N 1.38607 * 124.66449 * 179.97438 * 4 3 2 6 6 C 1.34785 * 119.99578 * 0.02562 * 5 4 3 7 7 O 1.21278 * 119.99888 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.99880 * 179.97438 * 6 5 4 9 9 N 1.46891 * 109.47203 * 179.97438 * 8 6 5 10 10 C 1.46900 * 110.99859 * 66.04864 * 9 8 6 11 11 C 1.46902 * 111.00371 * 190.00018 * 9 8 6 12 12 H 1.09000 * 109.47263 * 300.00454 * 11 9 8 13 13 C 1.53006 * 109.46626 * 60.00148 * 11 9 8 14 14 C 1.50697 * 109.47181 * 180.02562 * 11 9 8 15 15 H 1.07994 * 120.00496 * 0.02562 * 14 11 9 16 16 C 1.37887 * 119.99690 * 180.02562 * 14 11 9 17 17 N 1.31507 * 120.00093 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 119.99676 * 180.02562 * 16 14 11 19 19 H 1.48508 * 109.47028 * 90.00202 * 18 16 14 20 20 H 1.48493 * 109.46961 * 209.99772 * 18 16 14 21 21 H 1.48498 * 109.47538 * 330.00225 * 18 16 14 22 22 C 1.37192 * 110.67778 * 0.24302 * 4 3 2 23 23 C 1.46431 * 123.61087 * 179.75600 * 22 4 3 24 24 O 1.21645 * 119.99687 * 90.02477 * 23 22 4 25 25 O 1.34879 * 120.00484 * 270.02632 * 23 22 4 26 26 C 1.32505 * 124.58206 * 179.97438 * 2 1 3 27 27 C 1.50704 * 123.41702 * 0.02562 * 26 2 1 28 28 H 1.08994 * 109.47097 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.46762 * 120.02199 * 1 2 3 30 30 H 1.08997 * 109.47229 * 240.02386 * 1 2 3 31 31 H 0.97000 * 120.00923 * 180.02562 * 5 4 3 32 32 H 1.09007 * 109.46876 * 60.00192 * 8 6 5 33 33 H 1.09002 * 109.47527 * 300.00305 * 8 6 5 34 34 H 1.09007 * 109.47437 * 183.95227 * 10 9 8 35 35 H 1.09004 * 109.47505 * 303.95311 * 10 9 8 36 36 H 1.08998 * 109.47445 * 63.95753 * 10 9 8 37 37 H 1.09001 * 109.47002 * 179.97438 * 13 11 9 38 38 H 1.08993 * 109.46955 * 300.00347 * 13 11 9 39 39 H 1.09000 * 109.47050 * 60.00176 * 13 11 9 40 40 H 0.96999 * 120.00118 * 179.97438 * 17 16 14 41 41 H 0.96691 * 117.00633 * 180.02562 * 25 23 22 42 42 H 1.08992 * 109.47237 * 90.02274 * 27 26 2 43 43 H 1.09000 * 109.46975 * 210.02801 * 27 26 2 44 44 H 1.08999 * 109.46628 * 330.02738 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 16 2.5030 1.4445 0.0000 4 6 3.9477 0.5403 0.0008 5 7 5.2208 1.0884 0.0006 6 6 5.3781 2.4271 0.0003 7 8 4.4057 3.1519 0.0006 8 6 6.7622 3.0231 0.0007 9 7 6.6642 4.4887 -0.0004 10 6 6.0729 4.9777 1.2523 11 6 7.9768 5.1040 -0.2382 12 1 8.6682 4.8005 0.5479 13 6 8.5156 4.6474 -1.5955 14 6 7.8369 6.6045 -0.2317 15 1 6.8697 7.0559 -0.0669 16 6 8.9437 7.4010 -0.4361 17 7 10.1215 6.8513 -0.6362 18 14 8.7703 9.2609 -0.4273 19 1 8.9675 9.7699 0.9538 20 1 9.7916 9.8574 -1.3251 21 1 7.4141 9.6340 -0.9034 22 6 3.6774 -0.8047 -0.0044 23 6 4.7133 -1.8396 -0.0104 24 8 5.1448 -2.2742 1.0406 25 8 5.1890 -2.3111 -1.1811 26 6 2.2592 -1.0909 0.0005 27 6 1.6946 -2.4882 0.0006 28 1 -0.3633 1.0276 -0.0005 29 1 -0.3633 -0.5142 -0.8898 30 1 -0.3633 -0.5134 0.8902 31 1 5.9985 0.5088 0.0007 32 1 7.2995 2.6946 -0.8891 33 1 7.2989 2.6951 0.8909 34 1 5.9472 6.0591 1.1970 35 1 5.1018 4.5064 1.4040 36 1 6.7308 4.7306 2.0854 37 1 9.4894 5.1043 -1.7722 38 1 8.6168 3.5622 -1.5998 39 1 7.8243 4.9509 -2.3816 40 1 10.9000 7.4116 -0.7804 41 1 5.8718 -2.9940 -1.1345 42 1 1.5592 -2.8255 -1.0270 43 1 2.3832 -3.1583 0.5152 44 1 0.7329 -2.4914 0.5136 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833034080.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:51 Heat of formation + Delta-G solvation = -108.311097 kcal Electronic energy + Delta-G solvation = -27303.038569 eV Core-core repulsion = 23346.466270 eV Total energy + Delta-G solvation = -3956.572298 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.84182 -41.15908 -39.01262 -38.35634 -37.10381 -36.38194 -34.78531 -32.63663 -31.24064 -30.43888 -29.64079 -27.11641 -26.99604 -25.82390 -24.79089 -22.60280 -22.21578 -21.31468 -20.02399 -19.30546 -19.09133 -18.55717 -18.20215 -17.56304 -17.17894 -16.72417 -16.44188 -16.05081 -15.79042 -15.61649 -15.45062 -15.19695 -14.69710 -14.52381 -14.20891 -14.17728 -13.72560 -13.59198 -13.44744 -13.37440 -13.04899 -12.97850 -12.85901 -12.72977 -12.67773 -12.63477 -12.58576 -12.22068 -12.11916 -11.99797 -11.89037 -11.70858 -11.45127 -10.95647 -10.74148 -10.52257 -9.38055 -9.08016 -8.99691 -8.13223 -6.23576 -0.23681 0.23106 0.76861 1.05767 1.11801 1.41749 1.43513 1.45408 1.53259 1.58879 2.21898 2.42394 3.15224 3.29814 3.52875 3.79508 3.96489 4.16967 4.27019 4.28547 4.38738 4.49554 4.52161 4.66776 4.72235 4.74466 4.77210 4.88347 4.89041 4.96711 4.99446 5.08928 5.13692 5.23851 5.30059 5.38487 5.46292 5.53419 5.67343 5.72942 5.86097 6.23170 6.28916 6.58155 6.72189 6.85510 6.88937 7.45141 8.92797 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.020119 B = 0.002619 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.365820 B =10690.301495 C =11709.431257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.246 4.246 3 S 0.282 5.718 4 C 0.041 3.959 5 N -0.630 5.630 6 C 0.515 3.485 7 O -0.503 6.503 8 C 0.037 3.963 9 N -0.532 5.532 10 C 0.040 3.960 11 C 0.218 3.782 12 H -0.024 1.024 13 C -0.126 4.126 14 C -0.521 4.521 15 H 0.056 0.944 16 C 0.015 3.985 17 N -0.917 5.917 18 Si 0.957 3.043 19 H -0.277 1.277 20 H -0.282 1.282 21 H -0.272 1.272 22 C -0.214 4.214 23 C 0.566 3.434 24 O -0.532 6.532 25 O -0.501 6.501 26 C -0.066 4.066 27 C -0.092 4.092 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.425 0.575 32 H 0.124 0.876 33 H 0.077 0.923 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.010 0.990 37 H 0.064 0.936 38 H 0.040 0.960 39 H 0.030 0.970 40 H 0.262 0.738 41 H 0.432 0.568 42 H 0.087 0.913 43 H 0.055 0.945 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.803 -20.478 -0.344 25.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.363 4.363 3 S 0.546 5.454 4 C -0.177 4.177 5 N -0.275 5.275 6 C 0.304 3.696 7 O -0.377 6.377 8 C -0.094 4.094 9 N -0.257 5.257 10 C -0.108 4.108 11 C 0.112 3.888 12 H -0.007 1.007 13 C -0.184 4.184 14 C -0.559 4.559 15 H 0.074 0.926 16 C -0.184 4.184 17 N -0.557 5.557 18 Si 0.783 3.217 19 H -0.202 1.202 20 H -0.207 1.207 21 H -0.197 1.197 22 C -0.234 4.234 23 C 0.408 3.592 24 O -0.422 6.422 25 O -0.314 6.314 26 C -0.076 4.076 27 C -0.150 4.150 28 H 0.090 0.910 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.264 0.736 32 H 0.142 0.858 33 H 0.095 0.905 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.029 0.971 37 H 0.082 0.918 38 H 0.059 0.941 39 H 0.049 0.951 40 H 0.072 0.928 41 H 0.294 0.706 42 H 0.106 0.894 43 H 0.074 0.926 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -17.013 -17.949 -0.511 24.736 hybrid contribution 2.444 -1.371 0.756 2.902 sum -14.569 -19.320 0.245 24.199 Atomic orbital electron populations 1.20370 0.85171 1.03605 1.04133 1.24965 1.02469 0.96928 1.11987 1.84464 0.88184 1.03361 1.69342 1.21998 0.93447 0.96056 1.06159 1.42841 1.05713 1.07684 1.71242 1.21380 0.93123 0.80583 0.74559 1.90581 1.41318 1.58880 1.46949 1.22025 0.91392 0.91141 1.04848 1.61790 1.26192 1.02438 1.35245 1.22264 0.98313 1.01427 0.88793 1.19119 0.83171 0.93376 0.93164 1.00699 1.21723 1.01656 0.97484 0.97508 1.21391 0.94319 0.91555 1.48661 0.92576 1.25625 0.94952 1.02903 0.94884 1.69981 0.99487 1.36431 1.49787 0.85572 0.77834 0.80387 0.77943 1.20242 1.20734 1.19669 1.18910 0.93965 0.88964 1.21567 1.20005 0.78873 0.79207 0.81102 1.90954 1.58539 1.58439 1.34300 1.84730 1.56501 1.56597 1.33604 1.19414 0.87923 0.97922 1.02317 1.20556 1.01598 0.89372 1.03514 0.91033 0.89111 0.89251 0.73612 0.85797 0.90538 0.92167 0.90988 0.97137 0.91750 0.94109 0.95117 0.92836 0.70622 0.89423 0.92610 0.88828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.90 9.44 71.24 0.67 -0.23 16 2 C -0.25 -4.81 6.42 24.55 0.16 -4.65 16 3 S 0.28 7.07 19.92 -56.49 -1.13 5.95 16 4 C 0.04 1.07 6.99 83.37 0.58 1.66 16 5 N -0.63 -16.11 5.37 -309.03 -1.66 -17.77 16 6 C 0.52 15.93 7.48 87.66 0.66 16.58 16 7 O -0.50 -18.09 11.75 -3.02 -0.04 -18.13 16 8 C 0.04 1.20 5.26 85.56 0.45 1.65 16 9 N -0.53 -22.49 4.36 -906.03 -3.95 -26.44 16 10 C 0.04 1.64 8.88 127.69 1.13 2.77 16 11 C 0.22 10.71 2.06 44.17 0.09 10.80 16 12 H -0.02 -1.31 8.14 -2.39 -0.02 -1.33 16 13 C -0.13 -5.81 8.77 71.98 0.63 -5.18 16 14 C -0.52 -28.40 7.93 25.60 0.20 -28.20 16 15 H 0.06 3.11 6.39 -2.91 -0.02 3.09 16 16 C 0.02 0.84 5.30 84.66 0.45 1.28 16 17 N -0.92 -51.47 11.32 21.45 0.24 -51.22 16 18 Si 0.96 43.50 29.54 68.60 2.03 45.53 16 19 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 20 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 21 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 22 C -0.21 -5.20 5.87 -19.74 -0.12 -5.31 16 23 C 0.57 12.76 6.61 69.96 0.46 13.22 16 24 O -0.53 -14.70 17.90 19.36 0.35 -14.36 16 25 O -0.50 -7.99 13.44 -57.93 -0.78 -8.77 16 26 C -0.07 -1.35 6.00 -19.35 -0.12 -1.46 16 27 C -0.09 -1.30 9.67 71.24 0.69 -0.61 16 28 H 0.07 0.83 8.13 -2.39 -0.02 0.81 16 29 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.09 0.83 7.93 -2.39 -0.02 0.81 16 31 H 0.43 8.83 8.16 -92.71 -0.76 8.07 16 32 H 0.12 3.68 5.83 -2.38 -0.01 3.67 16 33 H 0.08 2.26 8.12 -2.39 -0.02 2.24 16 34 H 0.06 2.65 6.23 -2.38 -0.01 2.64 16 35 H 0.07 2.75 5.82 -2.39 -0.01 2.74 16 36 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 37 H 0.06 3.31 6.07 -2.39 -0.01 3.30 16 38 H 0.04 1.55 6.20 -2.39 -0.01 1.54 16 39 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 41 H 0.43 2.57 9.11 -74.06 -0.67 1.90 16 42 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.05 0.88 7.70 -2.39 -0.02 0.86 16 44 H 0.09 0.94 7.36 -2.39 -0.02 0.93 16 Total: -1.00 -70.37 373.70 0.65 -69.72 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -0.36 Total: 13.17 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: 5.95 Total: 2.33 kcal Atomic # 7 Polarization: -90.07 SS G_CDS: -5.37 Total: -95.44 kcal Atomic # 8 Polarization: -40.79 SS G_CDS: -0.47 Total: -41.26 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Atomic # 16 Polarization: 7.07 SS G_CDS: -1.13 Total: 5.95 kcal Total: -70.37 0.65 -69.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833034080.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.587 kcal (2) G-P(sol) polarization free energy of solvation -70.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds