Wall clock time and date at job start Sat Apr 11 2020 05:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31785 * 122.74991 * 2 1 4 4 C 1.29022 * 117.12387 * 179.97438 * 3 2 1 5 5 S 1.70976 * 110.16969 * 359.72096 * 4 3 2 6 6 C 1.33638 * 122.75163 * 179.97438 * 2 1 3 7 7 C 1.50703 * 126.03349 * 0.02562 * 6 2 1 8 8 C 1.52992 * 109.47195 * 89.99989 * 7 6 2 9 9 C 1.50700 * 109.47416 * 179.97438 * 8 7 6 10 10 O 1.20821 * 119.99635 * 0.02562 * 9 8 7 11 11 O 1.34235 * 120.00318 * 179.97438 * 9 8 7 12 12 C 1.45194 * 116.99927 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.47239 * 330.00128 * 12 11 9 14 14 C 1.52997 * 109.47339 * 90.00371 * 12 11 9 15 15 C 1.50708 * 109.47032 * 210.00472 * 12 11 9 16 16 O 1.21280 * 119.99888 * 354.99873 * 15 12 11 17 17 N 1.34777 * 119.99928 * 174.99982 * 15 12 11 18 18 C 1.46496 * 119.99889 * 359.97438 * 17 15 12 19 19 C 1.46500 * 119.99779 * 179.97438 * 17 15 12 20 20 C 1.50694 * 109.46954 * 89.99836 * 19 17 15 21 21 H 1.08003 * 120.00102 * 0.02562 * 20 19 17 22 22 C 1.37878 * 119.99994 * 179.97438 * 20 19 17 23 23 N 1.31509 * 120.00205 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00154 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.46984 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.46858 * 120.00458 * 24 22 20 27 27 H 1.48495 * 109.47352 * 240.00328 * 24 22 20 28 28 H 1.09004 * 109.47416 * 270.00491 * 1 2 3 29 29 H 1.08998 * 109.47011 * 30.00264 * 1 2 3 30 30 H 1.08997 * 109.46782 * 150.00255 * 1 2 3 31 31 H 1.08000 * 124.91328 * 180.02562 * 4 3 2 32 32 H 1.08997 * 109.47250 * 329.99346 * 7 6 2 33 33 H 1.09007 * 109.47050 * 209.99788 * 7 6 2 34 34 H 1.09005 * 109.47276 * 59.99327 * 8 7 6 35 35 H 1.09002 * 109.47423 * 299.99895 * 8 7 6 36 36 H 1.09002 * 109.47153 * 59.99705 * 14 12 11 37 37 H 1.09001 * 109.46832 * 299.99896 * 14 12 11 38 38 H 1.09004 * 109.47261 * 179.97438 * 14 12 11 39 39 H 1.09003 * 109.47373 * 90.00178 * 18 17 15 40 40 H 1.09005 * 109.46584 * 209.99714 * 18 17 15 41 41 H 1.08999 * 109.47384 * 329.99408 * 18 17 15 42 42 H 1.08993 * 109.47001 * 209.99914 * 19 17 15 43 43 H 1.09002 * 109.47216 * 330.00108 * 19 17 15 44 44 H 0.97004 * 120.00789 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5039 0.9819 0.0005 5 16 3.9333 -0.6731 0.0089 6 6 2.2300 -1.1239 0.0005 7 6 1.6846 -2.5288 0.0006 8 6 1.5006 -3.0045 -1.4418 9 6 0.9559 -4.4096 -1.4418 10 8 0.7368 -4.9726 -0.3954 11 8 0.7131 -5.0354 -2.6042 12 6 0.1884 -6.3871 -2.5281 13 1 0.5530 -6.8678 -1.6203 14 6 -1.3406 -6.3400 -2.5015 15 6 0.6460 -7.1720 -3.7305 16 8 1.2687 -6.6209 -4.6134 17 7 0.3633 -8.4865 -3.8247 18 6 -0.3884 -9.1523 -2.7581 19 6 0.8076 -9.2493 -4.9939 20 6 2.1771 -9.8202 -4.7302 21 1 2.6672 -9.6339 -3.7860 22 6 2.8039 -10.5814 -5.6939 23 7 2.2069 -10.8088 -6.8434 24 14 4.5012 -11.2898 -5.3669 25 1 4.9502 -10.8920 -4.0084 26 1 4.4447 -12.7711 -5.4552 27 1 5.4576 -10.7699 -6.3768 28 1 -0.3634 0.0001 1.0277 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 4.2059 1.8026 0.0010 32 1 0.7234 -2.5454 0.5141 33 1 2.3827 -3.1895 0.5148 34 1 2.4620 -2.9879 -1.9554 35 1 0.8026 -2.3439 -1.9561 36 1 -1.7051 -5.8594 -3.4094 37 1 -1.6715 -5.7724 -1.6319 38 1 -1.7345 -7.3549 -2.4449 39 1 -1.4552 -9.0936 -2.9741 40 1 -0.0866 -10.1980 -2.6992 41 1 -0.1826 -8.6607 -1.8072 42 1 0.1063 -10.0612 -5.1859 43 1 0.8491 -8.5919 -5.8623 44 1 2.6479 -11.3440 -7.5217 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840604697.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:08 Heat of formation + Delta-G solvation = -79.644401 kcal Electronic energy + Delta-G solvation = -26692.604540 eV Core-core repulsion = 22737.275323 eV Total energy + Delta-G solvation = -3955.329217 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.82164 -40.22452 -39.00948 -36.62668 -34.95993 -34.78507 -32.92316 -31.80359 -31.22113 -28.32747 -27.71433 -26.20930 -25.54307 -24.61877 -23.83688 -22.41407 -20.67672 -19.24281 -18.88001 -18.54000 -17.88955 -16.75046 -16.56518 -16.51918 -16.00460 -15.68448 -15.37727 -15.00058 -14.71757 -14.44541 -14.02404 -13.86708 -13.52595 -13.39320 -13.05872 -12.96685 -12.89977 -12.77563 -12.46314 -12.38633 -12.18377 -12.12303 -11.93162 -11.69335 -11.44982 -11.23605 -11.23071 -10.92376 -10.74683 -10.65660 -10.58350 -10.19887 -10.00012 -9.66256 -9.61852 -9.08100 -8.93805 -8.47903 -7.76090 -6.08649 -4.13616 0.31539 0.99850 1.39194 2.09157 2.34018 2.52049 3.22801 3.27659 3.35544 3.39979 3.81026 3.88222 4.34443 4.41729 4.50767 4.56791 4.72819 4.78876 4.86061 4.88308 4.99352 5.05572 5.14863 5.25693 5.26103 5.33060 5.47558 5.49532 5.56945 5.60637 5.61935 5.62504 5.82293 5.92948 5.96169 6.18649 6.39618 6.95102 7.34983 7.35784 7.43235 7.65507 7.87408 8.17145 8.25777 8.81592 8.96396 9.51600 10.99520 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015701 B = 0.002231 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.948461 B =12549.689400 C =13716.799814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.064 3.936 3 N -0.469 5.469 4 C 0.018 3.982 5 S 0.127 5.873 6 C -0.221 4.221 7 C -0.029 4.029 8 C -0.110 4.110 9 C 0.463 3.537 10 O -0.512 6.512 11 O -0.324 6.324 12 C 0.069 3.931 13 H 0.106 0.894 14 C -0.169 4.169 15 C 0.508 3.492 16 O -0.520 6.520 17 N -0.596 5.596 18 C 0.076 3.924 19 C 0.246 3.754 20 C -0.528 4.528 21 H 0.058 0.942 22 C 0.061 3.939 23 N -0.894 5.894 24 Si 0.899 3.101 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.282 1.282 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.199 0.801 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.089 0.911 39 H 0.051 0.949 40 H 0.079 0.921 41 H 0.058 0.942 42 H 0.036 0.964 43 H 0.046 0.954 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.151 19.329 16.076 25.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.068 4.068 3 N -0.182 5.182 4 C -0.280 4.280 5 S 0.381 5.619 6 C -0.342 4.342 7 C -0.069 4.069 8 C -0.148 4.148 9 C 0.306 3.694 10 O -0.400 6.400 11 O -0.239 6.239 12 C 0.011 3.989 13 H 0.123 0.877 14 C -0.227 4.227 15 C 0.292 3.708 16 O -0.395 6.395 17 N -0.329 5.329 18 C -0.068 4.068 19 C 0.128 3.872 20 C -0.567 4.567 21 H 0.076 0.924 22 C -0.141 4.141 23 N -0.533 5.533 24 Si 0.727 3.273 25 H -0.198 1.198 26 H -0.209 1.209 27 H -0.208 1.208 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.216 0.784 32 H 0.115 0.885 33 H 0.107 0.893 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.107 0.893 39 H 0.069 0.931 40 H 0.097 0.903 41 H 0.076 0.924 42 H 0.054 0.946 43 H 0.064 0.936 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.102 19.359 15.709 25.123 hybrid contribution 0.223 -0.482 0.227 0.577 sum -2.879 18.877 15.937 24.872 Atomic orbital electron populations 1.20407 0.86962 1.03573 1.03138 1.20283 0.98344 0.86115 1.02063 1.66200 1.05073 1.31561 1.15390 1.28311 0.95254 1.00163 1.04238 1.84205 1.06796 1.03473 1.67383 1.25624 0.95237 1.00311 1.12999 1.19815 1.02922 0.88709 0.95446 1.21386 1.04417 0.90072 0.98968 1.23627 0.74573 0.89194 0.82006 1.90651 1.49282 1.67183 1.32918 1.86619 1.74944 1.28715 1.33647 1.22647 0.95378 0.80721 1.00169 0.87653 1.22274 0.92368 1.04569 1.03468 1.19776 0.81121 0.82768 0.87131 1.90707 1.39309 1.69127 1.40363 1.48075 1.54169 1.07529 1.23151 1.21846 0.95281 0.99689 0.89956 1.19359 0.94858 0.90640 0.82379 1.21453 1.01990 1.31616 1.01640 0.92386 1.24937 0.98107 0.96215 0.94835 1.69934 1.38251 1.39293 1.05787 0.86427 0.84002 0.78516 0.78402 1.19792 1.20909 1.20809 0.90479 0.90416 0.90514 0.78396 0.88469 0.89275 0.87145 0.87146 0.90953 0.91304 0.89278 0.93107 0.90274 0.92357 0.94579 0.93638 0.92689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.57 9.82 36.01 0.35 -0.22 16 2 C 0.06 0.59 6.74 -84.22 -0.57 0.02 16 3 N -0.47 -4.66 10.53 -11.90 -0.13 -4.79 16 4 C 0.02 0.14 12.23 51.58 0.63 0.77 16 5 S 0.13 0.97 23.22 -107.50 -2.50 -1.53 16 6 C -0.22 -1.91 5.84 -35.92 -0.21 -2.12 16 7 C -0.03 -0.25 4.44 -27.89 -0.12 -0.37 16 8 C -0.11 -1.03 5.79 -27.89 -0.16 -1.19 16 9 C 0.46 6.10 7.93 36.01 0.29 6.39 16 10 O -0.51 -7.44 15.20 -18.75 -0.28 -7.73 16 11 O -0.32 -5.23 9.42 -45.90 -0.43 -5.66 16 12 C 0.07 1.12 2.16 -27.88 -0.06 1.06 16 13 H 0.11 1.64 6.14 -51.93 -0.32 1.32 16 14 C -0.17 -2.12 9.27 37.16 0.34 -1.78 16 15 C 0.51 10.76 7.10 -10.98 -0.08 10.69 16 16 O -0.52 -13.41 16.09 -14.05 -0.23 -13.63 16 17 N -0.60 -12.48 2.86 -182.96 -0.52 -13.00 16 18 C 0.08 1.16 8.92 59.84 0.53 1.70 16 19 C 0.25 6.36 5.16 -5.20 -0.03 6.33 16 20 C -0.53 -14.89 9.39 -34.44 -0.32 -15.22 16 21 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 22 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 23 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 24 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 25 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 27 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 28 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.45 7.19 -51.93 -0.37 0.08 16 31 H 0.20 0.86 8.06 -52.49 -0.42 0.44 16 32 H 0.10 0.77 7.39 -51.93 -0.38 0.38 16 33 H 0.09 0.79 8.10 -51.93 -0.42 0.37 16 34 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.11 0.85 7.98 -51.93 -0.41 0.44 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.09 0.99 5.12 -51.93 -0.27 0.72 16 39 H 0.05 0.64 7.02 -51.93 -0.36 0.27 16 40 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 41 H 0.06 0.75 6.08 -51.93 -0.32 0.44 16 42 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 43 H 0.05 1.32 7.42 -51.93 -0.39 0.94 16 44 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 385.18 15.07 5.80 5.80 Total: -1.00 -35.79 385.18 -8.23 -44.02 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -6.16 Total: -2.35 kcal Atomic # 6 Polarization: 7.21 SS G_CDS: 0.50 Total: 7.71 kcal Atomic # 7 Polarization: -43.48 SS G_CDS: 0.09 Total: -43.40 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: -0.94 Total: -27.02 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: 0.97 SS G_CDS: -2.50 Total: -1.53 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.79 -8.23 -44.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840604697.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.624 kcal (2) G-P(sol) polarization free energy of solvation -35.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds