Wall clock time and date at job start Sat Apr 11 2020 05:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31785 * 122.74991 * 2 1 4 4 C 1.29022 * 117.12387 * 179.97438 * 3 2 1 5 5 S 1.70976 * 110.16969 * 359.72096 * 4 3 2 6 6 C 1.33638 * 122.75163 * 179.97438 * 2 1 3 7 7 C 1.50703 * 126.03349 * 0.02562 * 6 2 1 8 8 C 1.52992 * 109.47195 * 89.99989 * 7 6 2 9 9 C 1.50700 * 109.47416 * 179.97438 * 8 7 6 10 10 O 1.20821 * 119.99635 * 0.02562 * 9 8 7 11 11 O 1.34235 * 120.00318 * 179.97438 * 9 8 7 12 12 C 1.45194 * 116.99927 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.47239 * 330.00128 * 12 11 9 14 14 C 1.52997 * 109.47339 * 90.00371 * 12 11 9 15 15 C 1.50708 * 109.47032 * 210.00472 * 12 11 9 16 16 O 1.21280 * 119.99888 * 354.99873 * 15 12 11 17 17 N 1.34777 * 119.99928 * 174.99982 * 15 12 11 18 18 C 1.46496 * 119.99889 * 359.97438 * 17 15 12 19 19 C 1.46500 * 119.99779 * 179.97438 * 17 15 12 20 20 C 1.50694 * 109.46954 * 89.99836 * 19 17 15 21 21 H 1.08003 * 120.00102 * 0.02562 * 20 19 17 22 22 C 1.37878 * 119.99994 * 179.97438 * 20 19 17 23 23 N 1.31509 * 120.00205 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00154 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.46984 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.46858 * 120.00458 * 24 22 20 27 27 H 1.48495 * 109.47352 * 240.00328 * 24 22 20 28 28 H 1.09004 * 109.47416 * 270.00491 * 1 2 3 29 29 H 1.08998 * 109.47011 * 30.00264 * 1 2 3 30 30 H 1.08997 * 109.46782 * 150.00255 * 1 2 3 31 31 H 1.08000 * 124.91328 * 180.02562 * 4 3 2 32 32 H 1.08997 * 109.47250 * 329.99346 * 7 6 2 33 33 H 1.09007 * 109.47050 * 209.99788 * 7 6 2 34 34 H 1.09005 * 109.47276 * 59.99327 * 8 7 6 35 35 H 1.09002 * 109.47423 * 299.99895 * 8 7 6 36 36 H 1.09002 * 109.47153 * 59.99705 * 14 12 11 37 37 H 1.09001 * 109.46832 * 299.99896 * 14 12 11 38 38 H 1.09004 * 109.47261 * 179.97438 * 14 12 11 39 39 H 1.09003 * 109.47373 * 90.00178 * 18 17 15 40 40 H 1.09005 * 109.46584 * 209.99714 * 18 17 15 41 41 H 1.08999 * 109.47384 * 329.99408 * 18 17 15 42 42 H 1.08993 * 109.47001 * 209.99914 * 19 17 15 43 43 H 1.09002 * 109.47216 * 330.00108 * 19 17 15 44 44 H 0.97004 * 120.00789 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5039 0.9819 0.0005 5 16 3.9333 -0.6731 0.0089 6 6 2.2300 -1.1239 0.0005 7 6 1.6846 -2.5288 0.0006 8 6 1.5006 -3.0045 -1.4418 9 6 0.9559 -4.4096 -1.4418 10 8 0.7368 -4.9726 -0.3954 11 8 0.7131 -5.0354 -2.6042 12 6 0.1884 -6.3871 -2.5281 13 1 0.5530 -6.8678 -1.6203 14 6 -1.3406 -6.3400 -2.5015 15 6 0.6460 -7.1720 -3.7305 16 8 1.2687 -6.6209 -4.6134 17 7 0.3633 -8.4865 -3.8247 18 6 -0.3884 -9.1523 -2.7581 19 6 0.8076 -9.2493 -4.9939 20 6 2.1771 -9.8202 -4.7302 21 1 2.6672 -9.6339 -3.7860 22 6 2.8039 -10.5814 -5.6939 23 7 2.2069 -10.8088 -6.8434 24 14 4.5012 -11.2898 -5.3669 25 1 4.9502 -10.8920 -4.0084 26 1 4.4447 -12.7711 -5.4552 27 1 5.4576 -10.7699 -6.3768 28 1 -0.3634 0.0001 1.0277 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 4.2059 1.8026 0.0010 32 1 0.7234 -2.5454 0.5141 33 1 2.3827 -3.1895 0.5148 34 1 2.4620 -2.9879 -1.9554 35 1 0.8026 -2.3439 -1.9561 36 1 -1.7051 -5.8594 -3.4094 37 1 -1.6715 -5.7724 -1.6319 38 1 -1.7345 -7.3549 -2.4449 39 1 -1.4552 -9.0936 -2.9741 40 1 -0.0866 -10.1980 -2.6992 41 1 -0.1826 -8.6607 -1.8072 42 1 0.1063 -10.0612 -5.1859 43 1 0.8491 -8.5919 -5.8623 44 1 2.6479 -11.3440 -7.5217 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840604697.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:08 Heat of formation + Delta-G solvation = -101.794610 kcal Electronic energy + Delta-G solvation = -26693.565045 eV Core-core repulsion = 22737.275323 eV Total energy + Delta-G solvation = -3956.289722 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.97024 -40.91624 -40.51772 -37.81456 -36.71353 -35.53610 -34.90924 -33.08664 -31.97630 -29.65207 -28.94314 -27.65963 -26.30687 -25.87974 -24.96736 -23.86066 -21.76275 -20.43593 -19.87044 -19.22770 -18.92044 -18.67558 -18.12506 -17.56258 -17.32258 -16.87671 -16.54682 -16.26740 -15.98468 -15.68330 -15.16344 -14.80136 -14.59556 -14.40993 -14.30980 -14.10702 -13.78720 -13.63563 -13.54737 -13.46494 -13.37314 -13.31648 -13.07548 -13.01152 -12.82395 -12.62297 -12.55703 -12.52511 -12.23698 -11.94303 -11.83911 -11.71528 -11.66528 -10.66737 -10.63576 -10.61873 -10.24917 -9.67753 -9.52859 -8.25128 -6.39652 -0.29152 0.41381 0.79377 1.05022 1.30758 1.35754 1.38083 1.49652 1.61802 1.79769 2.30945 2.43433 3.04914 3.32016 3.40025 3.46988 3.74493 3.81253 3.85894 3.90802 4.05532 4.24747 4.29762 4.33575 4.46150 4.54961 4.63105 4.69436 4.74778 4.76704 4.87746 4.90675 4.93055 4.95170 5.00017 5.10227 5.18569 5.32803 5.38739 5.50219 5.76908 6.02078 6.51540 6.64681 6.69437 6.74518 7.19660 7.34850 8.82360 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015701 B = 0.002231 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.948461 B =12549.689400 C =13716.799814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.054 3.946 3 N -0.500 5.500 4 C 0.022 3.978 5 S 0.136 5.864 6 C -0.233 4.233 7 C -0.021 4.021 8 C -0.104 4.104 9 C 0.464 3.536 10 O -0.524 6.524 11 O -0.346 6.346 12 C 0.079 3.921 13 H 0.116 0.884 14 C -0.161 4.161 15 C 0.498 3.502 16 O -0.580 6.580 17 N -0.600 5.600 18 C 0.069 3.931 19 C 0.260 3.740 20 C -0.545 4.545 21 H 0.051 0.949 22 C 0.009 3.991 23 N -0.926 5.926 24 Si 0.967 3.033 25 H -0.269 1.269 26 H -0.267 1.267 27 H -0.281 1.281 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.227 0.773 32 H 0.104 0.896 33 H 0.083 0.917 34 H 0.113 0.887 35 H 0.130 0.870 36 H 0.067 0.933 37 H 0.091 0.909 38 H 0.106 0.894 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.088 0.912 42 H 0.033 0.967 43 H 0.001 0.999 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.259 19.650 18.082 27.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.078 4.078 3 N -0.214 5.214 4 C -0.275 4.275 5 S 0.390 5.610 6 C -0.354 4.354 7 C -0.060 4.060 8 C -0.142 4.142 9 C 0.308 3.692 10 O -0.414 6.414 11 O -0.262 6.262 12 C 0.021 3.979 13 H 0.133 0.867 14 C -0.218 4.218 15 C 0.285 3.715 16 O -0.460 6.460 17 N -0.332 5.332 18 C -0.073 4.073 19 C 0.139 3.861 20 C -0.583 4.583 21 H 0.070 0.930 22 C -0.190 4.190 23 N -0.565 5.565 24 Si 0.792 3.208 25 H -0.193 1.193 26 H -0.192 1.192 27 H -0.207 1.207 28 H 0.103 0.897 29 H 0.094 0.906 30 H 0.106 0.894 31 H 0.243 0.757 32 H 0.122 0.878 33 H 0.101 0.899 34 H 0.131 0.869 35 H 0.148 0.852 36 H 0.086 0.914 37 H 0.110 0.890 38 H 0.125 0.875 39 H 0.103 0.897 40 H 0.093 0.907 41 H 0.106 0.894 42 H 0.051 0.949 43 H 0.019 0.981 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.245 19.664 17.767 26.699 hybrid contribution 0.264 -0.531 -0.385 0.707 sum -2.981 19.133 17.382 26.020 Atomic orbital electron populations 1.20484 0.85881 1.04034 1.03774 1.20615 0.99312 0.86122 1.01751 1.66260 1.06065 1.32198 1.16912 1.28845 0.95158 1.01004 1.02472 1.84175 1.06259 1.03489 1.67072 1.25624 0.95750 1.00150 1.13864 1.19727 1.03174 0.88498 0.94636 1.21490 1.04726 0.87947 1.00013 1.24275 0.73911 0.90016 0.80978 1.90636 1.49940 1.67729 1.33053 1.86632 1.75516 1.28558 1.35472 1.22532 0.97602 0.80659 0.97137 0.86665 1.22286 0.89199 1.06072 1.04282 1.20720 0.79952 0.82811 0.88030 1.90664 1.42003 1.70366 1.42922 1.48060 1.54293 1.07769 1.23076 1.22194 0.96460 0.99240 0.89412 1.18846 0.94339 0.89797 0.83147 1.21703 1.03134 1.31971 1.01539 0.93039 1.25837 1.02148 0.96516 0.94535 1.70041 1.40001 1.39876 1.06631 0.85374 0.78835 0.78398 0.78242 1.19298 1.19242 1.20710 0.89720 0.90569 0.89427 0.75650 0.87775 0.89853 0.86870 0.85246 0.91433 0.89030 0.87543 0.89695 0.90726 0.89396 0.94861 0.98109 0.92290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.04 9.82 71.24 0.70 -0.34 16 2 C 0.05 0.92 6.74 41.52 0.28 1.20 16 3 N -0.50 -9.36 10.53 -191.55 -2.02 -11.37 16 4 C 0.02 0.31 12.23 130.66 1.60 1.91 16 5 S 0.14 1.89 23.22 -56.49 -1.31 0.58 16 6 C -0.23 -3.71 5.84 24.64 0.14 -3.57 16 7 C -0.02 -0.32 4.44 29.85 0.13 -0.18 16 8 C -0.10 -1.79 5.79 29.85 0.17 -1.62 16 9 C 0.46 11.58 7.93 71.24 0.56 12.14 16 10 O -0.52 -14.26 15.20 21.98 0.33 -13.92 16 11 O -0.35 -10.91 9.42 -45.12 -0.43 -11.33 16 12 C 0.08 2.46 2.16 29.85 0.06 2.52 16 13 H 0.12 3.35 6.14 -2.39 -0.01 3.34 16 14 C -0.16 -3.63 9.27 71.98 0.67 -2.96 16 15 C 0.50 21.36 7.10 87.66 0.62 21.99 16 16 O -0.58 -31.20 16.09 15.72 0.25 -30.95 16 17 N -0.60 -25.25 2.86 -851.14 -2.43 -27.68 16 18 C 0.07 1.96 8.92 127.77 1.14 3.09 16 19 C 0.26 13.87 5.16 85.63 0.44 14.31 16 20 C -0.54 -31.36 9.39 25.60 0.24 -31.12 16 21 H 0.05 2.96 7.81 -2.91 -0.02 2.93 16 22 C 0.01 0.51 5.46 84.66 0.46 0.97 16 23 N -0.93 -55.56 13.29 21.45 0.28 -55.28 16 24 Si 0.97 44.82 29.54 68.60 2.03 46.85 16 25 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 26 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 27 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 28 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.09 0.87 7.19 -2.39 -0.02 0.85 16 31 H 0.23 1.49 8.06 -2.91 -0.02 1.47 16 32 H 0.10 1.45 7.39 -2.39 -0.02 1.43 16 33 H 0.08 1.38 8.10 -2.38 -0.02 1.36 16 34 H 0.11 1.93 8.14 -2.38 -0.02 1.91 16 35 H 0.13 1.75 7.98 -2.39 -0.02 1.74 16 36 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.11 1.99 5.12 -2.38 -0.01 1.98 16 39 H 0.08 1.87 7.02 -2.39 -0.02 1.85 16 40 H 0.07 2.22 8.07 -2.38 -0.02 2.20 16 41 H 0.09 2.00 6.08 -2.39 -0.01 1.98 16 42 H 0.03 1.77 8.07 -2.39 -0.02 1.75 16 43 H 0.00 0.05 7.42 -2.39 -0.02 0.03 16 44 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -80.18 385.18 4.96 -75.22 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: 1.02 Total: 9.54 kcal Atomic # 6 Polarization: 11.12 SS G_CDS: 7.23 Total: 18.35 kcal Atomic # 7 Polarization: -90.16 SS G_CDS: -4.16 Total: -94.33 kcal Atomic # 8 Polarization: -56.37 SS G_CDS: 0.16 Total: -56.21 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -1.31 Total: 0.58 kcal Total: -80.18 4.96 -75.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840604697.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.578 kcal (2) G-P(sol) polarization free energy of solvation -80.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds