Wall clock time and date at job start Sat Apr 11 2020 05:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.46933 * 2 1 4 4 O 1.42900 * 109.47474 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46849 * 240.00305 * 2 1 3 6 6 C 1.50701 * 109.47108 * 59.99857 * 5 2 1 7 7 C 1.38246 * 119.98821 * 90.00137 * 6 5 2 8 8 C 1.38215 * 120.01338 * 180.27925 * 7 6 5 9 9 C 1.38358 * 119.98339 * 359.46462 * 8 7 6 10 10 Cl 1.73596 * 120.00861 * 180.24067 * 9 8 7 11 11 C 1.38349 * 119.97593 * 0.51073 * 9 8 7 12 12 C 1.38212 * 119.98495 * 359.74279 * 11 9 8 13 13 N 1.46497 * 109.47594 * 120.00391 * 2 1 3 14 14 C 1.34774 * 119.99744 * 299.99917 * 13 2 1 15 15 O 1.21587 * 120.00508 * 0.02562 * 14 13 2 16 16 N 1.34780 * 120.00083 * 179.97438 * 14 13 2 17 17 C 1.46502 * 120.00115 * 180.02562 * 16 14 13 18 18 C 1.52994 * 109.46971 * 180.02562 * 17 16 14 19 19 C 1.50704 * 109.47105 * 179.97438 * 18 17 16 20 20 H 1.07998 * 119.99744 * 0.02562 * 19 18 17 21 21 C 1.37878 * 120.00082 * 180.02562 * 19 18 17 22 22 N 1.31515 * 119.99901 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 120.00067 * 359.97438 * 21 19 18 24 24 H 1.48495 * 109.46982 * 89.99998 * 23 21 19 25 25 H 1.48499 * 109.47375 * 210.00269 * 23 21 19 26 26 H 1.48503 * 109.47145 * 330.00167 * 23 21 19 27 27 H 1.09003 * 109.46601 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46750 * 299.99700 * 1 2 3 29 29 H 1.08995 * 109.47274 * 60.00030 * 1 2 3 30 30 H 1.09004 * 109.47604 * 300.00417 * 3 2 1 31 31 H 1.09003 * 109.47158 * 60.00550 * 3 2 1 32 32 H 0.96698 * 114.00340 * 180.02562 * 4 3 2 33 33 H 1.08991 * 109.47245 * 299.99784 * 5 2 1 34 34 H 1.09000 * 109.47115 * 179.97438 * 5 2 1 35 35 H 1.08002 * 119.98964 * 359.97438 * 7 6 5 36 36 H 1.07998 * 120.00901 * 179.70367 * 8 7 6 37 37 H 1.08000 * 120.00704 * 179.72657 * 11 9 8 38 38 H 1.08004 * 119.99489 * 179.97438 * 12 11 9 39 39 H 0.96993 * 120.00434 * 119.99783 * 13 2 1 40 40 H 0.97002 * 119.99794 * 0.02562 * 16 14 13 41 41 H 1.09005 * 109.47166 * 300.00351 * 17 16 14 42 42 H 1.09001 * 109.46778 * 60.00228 * 17 16 14 43 43 H 1.08999 * 109.47731 * 300.00305 * 18 17 16 44 44 H 1.09001 * 109.47293 * 60.00409 * 18 17 16 45 45 H 0.97001 * 119.99764 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4426 -0.0006 5 6 2.0400 -0.7212 -1.2493 6 6 1.5376 -0.0107 -2.4797 7 6 2.2849 1.0063 -3.0439 8 6 1.8219 1.6622 -4.1690 9 6 0.6155 1.2931 -4.7370 10 17 0.0363 2.1123 -6.1538 11 6 -0.1317 0.2749 -4.1723 12 6 0.3298 -0.3766 -3.0442 13 7 2.0185 -0.6907 1.1961 14 6 1.6929 -0.2302 2.4202 15 8 0.9935 0.7580 2.5319 16 7 2.1419 -0.8659 3.5206 17 6 1.7875 -0.3658 4.8513 18 6 2.4209 -1.2612 5.9179 19 6 2.0570 -0.7464 7.2867 20 1 1.4357 0.1314 7.3859 21 6 2.5172 -1.3960 8.4125 22 7 2.1991 -0.9470 9.6070 23 14 3.5912 -2.9147 8.2410 24 1 5.0188 -2.5086 8.1948 25 1 3.3691 -3.8119 9.4032 26 1 3.2395 -3.6308 6.9885 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.6766 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 3.8623 2.3260 -0.0002 33 1 1.6767 -1.7488 -1.2493 34 1 3.1300 -0.7208 -1.2496 35 1 3.2284 1.2917 -2.6025 36 1 2.4035 2.4599 -4.6069 37 1 -1.0756 -0.0106 -4.6127 38 1 -0.2536 -1.1713 -2.6029 39 1 2.5761 -1.4793 1.1070 40 1 2.6995 -1.6546 3.4315 41 1 2.1569 0.6533 4.9666 42 1 0.7036 -0.3745 4.9659 43 1 2.0520 -2.2804 5.8027 44 1 3.5048 -1.2520 5.8031 45 1 2.5232 -1.4038 10.3989 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000875481288.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:37 Heat of formation + Delta-G solvation = -71.059093 kcal Electronic energy + Delta-G solvation = -26969.109727 eV Core-core repulsion = 23012.109091 eV Total energy + Delta-G solvation = -3957.000637 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.66834 -39.56743 -37.62942 -36.75429 -35.48437 -34.73566 -33.02681 -32.52919 -31.52070 -30.65966 -29.34658 -27.15748 -26.15214 -24.81977 -23.15687 -22.47122 -20.95738 -20.65234 -19.60427 -18.15217 -17.43560 -17.33373 -16.84008 -16.36238 -15.96210 -15.58282 -15.32934 -14.89823 -14.47632 -14.18665 -14.03492 -13.93940 -13.81231 -13.62982 -13.55735 -13.38669 -12.95843 -12.59071 -12.33419 -12.22080 -11.97657 -11.85680 -11.70391 -11.47660 -11.44938 -11.19494 -11.18205 -11.02201 -10.40259 -10.26989 -10.10467 -9.93594 -9.50862 -9.40011 -9.29021 -9.00842 -8.92218 -8.61725 -8.35535 -6.10142 -4.09967 0.69869 0.87901 1.74207 2.89481 3.22886 3.25801 3.33378 3.34644 3.54619 4.08316 4.33069 4.35499 4.38489 4.48423 4.55475 4.68650 4.73791 4.91854 4.99104 5.14801 5.22900 5.25559 5.34627 5.39445 5.54254 5.60894 5.67302 5.70455 5.80807 5.82336 5.89175 6.10201 6.16584 6.26145 6.28162 6.38393 6.59277 6.66019 6.85624 7.09339 7.26543 7.33039 7.51429 7.68893 8.34192 8.47537 8.93657 8.96728 9.50129 11.02909 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.034752 B = 0.001850 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.523249 B =15132.470787 C =15145.975449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.211 3.789 3 C 0.058 3.942 4 O -0.568 6.568 5 C -0.084 4.084 6 C -0.067 4.067 7 C -0.098 4.098 8 C -0.112 4.112 9 C -0.038 4.038 10 Cl -0.075 7.075 11 C -0.111 4.111 12 C -0.101 4.101 13 N -0.739 5.739 14 C 0.706 3.294 15 O -0.595 6.595 16 N -0.743 5.743 17 C 0.150 3.850 18 C -0.022 4.022 19 C -0.521 4.521 20 H 0.076 0.924 21 C 0.069 3.931 22 N -0.899 5.899 23 Si 0.883 3.117 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.266 1.266 27 H 0.060 0.940 28 H 0.086 0.914 29 H 0.064 0.936 30 H 0.049 0.951 31 H 0.074 0.926 32 H 0.376 0.624 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.137 0.863 36 H 0.132 0.868 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.394 0.606 40 H 0.391 0.609 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.021 0.979 44 H 0.017 0.983 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.327 1.304 -32.412 32.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.123 3.877 3 C -0.020 4.020 4 O -0.372 6.372 5 C -0.121 4.121 6 C -0.067 4.067 7 C -0.116 4.116 8 C -0.131 4.131 9 C -0.064 4.064 10 Cl -0.047 7.047 11 C -0.130 4.130 12 C -0.119 4.119 13 N -0.394 5.394 14 C 0.406 3.594 15 O -0.474 6.474 16 N -0.396 5.396 17 C 0.027 3.973 18 C -0.060 4.060 19 C -0.560 4.560 20 H 0.094 0.906 21 C -0.133 4.133 22 N -0.537 5.537 23 Si 0.710 3.290 24 H -0.203 1.203 25 H -0.213 1.213 26 H -0.191 1.191 27 H 0.079 0.921 28 H 0.105 0.895 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.092 0.908 32 H 0.222 0.778 33 H 0.099 0.901 34 H 0.109 0.891 35 H 0.155 0.845 36 H 0.150 0.850 37 H 0.151 0.849 38 H 0.151 0.849 39 H 0.227 0.773 40 H 0.223 0.777 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.039 0.961 44 H 0.035 0.965 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.121 1.621 -32.187 32.248 hybrid contribution 1.119 -0.830 -0.153 1.402 sum -0.002 0.790 -32.340 32.350 Atomic orbital electron populations 1.22313 0.93568 1.02795 1.04027 1.19914 0.93865 0.90663 0.83223 1.22755 0.81081 0.96796 1.01394 1.86407 1.19674 1.33409 1.97750 1.20813 1.02406 0.98661 0.90266 1.19772 0.94534 0.96287 0.96149 1.21162 1.00371 0.95206 0.94836 1.21074 0.94849 1.00685 0.96455 1.20960 0.96447 0.97468 0.91573 1.98375 1.88666 1.78362 1.39258 1.21049 1.00110 0.95416 0.96396 1.21098 0.95691 1.00014 0.95077 1.45061 1.57226 1.33209 1.03937 1.15951 0.80279 0.82971 0.80195 1.90820 1.43099 1.27613 1.85862 1.45534 1.55607 1.32437 1.06011 1.21342 0.99791 0.98248 0.77917 1.19796 0.95930 0.95569 0.94684 1.20922 1.32856 1.14161 0.88051 0.90616 1.25002 0.95886 0.97276 0.95160 1.69907 1.45538 1.40653 0.97613 0.86746 0.81061 0.83351 0.77861 1.20254 1.21309 1.19118 0.92074 0.89509 0.91722 0.93342 0.90793 0.77821 0.90143 0.89110 0.84510 0.85000 0.84941 0.84894 0.77293 0.77655 0.92279 0.92221 0.96071 0.96488 0.92582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.81 7.81 37.16 0.29 -1.52 16 2 C 0.21 2.17 0.61 -131.82 -0.08 2.09 16 3 C 0.06 0.64 5.14 37.15 0.19 0.83 16 4 O -0.57 -5.75 12.42 -35.23 -0.44 -6.18 16 5 C -0.08 -0.64 4.43 -27.88 -0.12 -0.77 16 6 C -0.07 -0.50 4.01 -104.62 -0.42 -0.92 16 7 C -0.10 -0.71 7.88 -39.59 -0.31 -1.03 16 8 C -0.11 -0.82 9.83 -39.55 -0.39 -1.21 16 9 C -0.04 -0.30 6.32 -39.50 -0.25 -0.55 16 10 Cl -0.08 -0.58 28.96 -51.86 -1.50 -2.08 16 11 C -0.11 -0.80 9.83 -39.55 -0.39 -1.19 16 12 C -0.10 -0.70 7.88 -39.59 -0.31 -1.02 16 13 N -0.74 -8.71 4.98 -52.42 -0.26 -8.97 16 14 C 0.71 11.42 7.98 -86.92 -0.69 10.73 16 15 O -0.59 -11.57 12.55 5.29 0.07 -11.50 16 16 N -0.74 -12.26 5.56 -65.22 -0.36 -12.63 16 17 C 0.15 3.07 5.61 -4.04 -0.02 3.05 16 18 C -0.02 -0.50 4.16 -27.88 -0.12 -0.62 16 19 C -0.52 -14.62 9.66 -34.44 -0.33 -14.95 16 20 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 21 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 22 N -0.90 -27.35 13.96 55.43 0.77 -26.58 16 23 Si 0.88 21.06 27.47 -169.99 -4.67 16.39 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.27 -6.00 6.54 56.52 0.37 -5.63 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.09 1.22 6.16 -51.93 -0.32 0.90 16 29 H 0.06 0.60 6.17 -51.93 -0.32 0.28 16 30 H 0.05 0.47 6.17 -51.93 -0.32 0.15 16 31 H 0.07 1.06 6.16 -51.93 -0.32 0.74 16 32 H 0.38 2.53 9.12 45.56 0.42 2.95 16 33 H 0.08 0.52 8.08 -51.93 -0.42 0.10 16 34 H 0.09 0.72 7.62 -51.93 -0.40 0.33 16 35 H 0.14 0.91 7.59 -52.49 -0.40 0.51 16 36 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 37 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 38 H 0.13 0.74 8.03 -52.48 -0.42 0.32 16 39 H 0.39 3.70 8.49 -40.82 -0.35 3.36 16 40 H 0.39 5.41 8.49 -40.82 -0.35 5.06 16 41 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 42 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 43 H 0.02 0.47 7.20 -51.93 -0.37 0.10 16 44 H 0.02 0.38 7.57 -51.93 -0.39 -0.02 16 45 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 LS Contribution 376.97 15.07 5.68 5.68 Total: -1.00 -33.35 376.97 -9.43 -42.78 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -5.66 Total: 8.29 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: -3.06 Total: -5.19 kcal Atomic # 7 Polarization: -48.33 SS G_CDS: 0.15 Total: -48.18 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.37 Total: -17.69 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.67 Total: 16.39 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.50 Total: -2.08 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.35 -9.43 -42.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875481288.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.282 kcal (2) G-P(sol) polarization free energy of solvation -33.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds