Wall clock time and date at job start Sat Apr 11 2020 05:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.46933 * 2 1 4 4 O 1.42900 * 109.47474 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46849 * 240.00305 * 2 1 3 6 6 C 1.50701 * 109.47108 * 59.99857 * 5 2 1 7 7 C 1.38246 * 119.98821 * 90.00137 * 6 5 2 8 8 C 1.38215 * 120.01338 * 180.27925 * 7 6 5 9 9 C 1.38358 * 119.98339 * 359.46462 * 8 7 6 10 10 Cl 1.73596 * 120.00861 * 180.24067 * 9 8 7 11 11 C 1.38349 * 119.97593 * 0.51073 * 9 8 7 12 12 C 1.38212 * 119.98495 * 359.74279 * 11 9 8 13 13 N 1.46497 * 109.47594 * 120.00391 * 2 1 3 14 14 C 1.34774 * 119.99744 * 299.99917 * 13 2 1 15 15 O 1.21587 * 120.00508 * 0.02562 * 14 13 2 16 16 N 1.34780 * 120.00083 * 179.97438 * 14 13 2 17 17 C 1.46502 * 120.00115 * 180.02562 * 16 14 13 18 18 C 1.52994 * 109.46971 * 180.02562 * 17 16 14 19 19 C 1.50704 * 109.47105 * 179.97438 * 18 17 16 20 20 H 1.07998 * 119.99744 * 0.02562 * 19 18 17 21 21 C 1.37878 * 120.00082 * 180.02562 * 19 18 17 22 22 N 1.31515 * 119.99901 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 120.00067 * 359.97438 * 21 19 18 24 24 H 1.48495 * 109.46982 * 89.99998 * 23 21 19 25 25 H 1.48499 * 109.47375 * 210.00269 * 23 21 19 26 26 H 1.48503 * 109.47145 * 330.00167 * 23 21 19 27 27 H 1.09003 * 109.46601 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46750 * 299.99700 * 1 2 3 29 29 H 1.08995 * 109.47274 * 60.00030 * 1 2 3 30 30 H 1.09004 * 109.47604 * 300.00417 * 3 2 1 31 31 H 1.09003 * 109.47158 * 60.00550 * 3 2 1 32 32 H 0.96698 * 114.00340 * 180.02562 * 4 3 2 33 33 H 1.08991 * 109.47245 * 299.99784 * 5 2 1 34 34 H 1.09000 * 109.47115 * 179.97438 * 5 2 1 35 35 H 1.08002 * 119.98964 * 359.97438 * 7 6 5 36 36 H 1.07998 * 120.00901 * 179.70367 * 8 7 6 37 37 H 1.08000 * 120.00704 * 179.72657 * 11 9 8 38 38 H 1.08004 * 119.99489 * 179.97438 * 12 11 9 39 39 H 0.96993 * 120.00434 * 119.99783 * 13 2 1 40 40 H 0.97002 * 119.99794 * 0.02562 * 16 14 13 41 41 H 1.09005 * 109.47166 * 300.00351 * 17 16 14 42 42 H 1.09001 * 109.46778 * 60.00228 * 17 16 14 43 43 H 1.08999 * 109.47731 * 300.00305 * 18 17 16 44 44 H 1.09001 * 109.47293 * 60.00409 * 18 17 16 45 45 H 0.97001 * 119.99764 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4426 -0.0006 5 6 2.0400 -0.7212 -1.2493 6 6 1.5376 -0.0107 -2.4797 7 6 2.2849 1.0063 -3.0439 8 6 1.8219 1.6622 -4.1690 9 6 0.6155 1.2931 -4.7370 10 17 0.0363 2.1123 -6.1538 11 6 -0.1317 0.2749 -4.1723 12 6 0.3298 -0.3766 -3.0442 13 7 2.0185 -0.6907 1.1961 14 6 1.6929 -0.2302 2.4202 15 8 0.9935 0.7580 2.5319 16 7 2.1419 -0.8659 3.5206 17 6 1.7875 -0.3658 4.8513 18 6 2.4209 -1.2612 5.9179 19 6 2.0570 -0.7464 7.2867 20 1 1.4357 0.1314 7.3859 21 6 2.5172 -1.3960 8.4125 22 7 2.1991 -0.9470 9.6070 23 14 3.5912 -2.9147 8.2410 24 1 5.0188 -2.5086 8.1948 25 1 3.3691 -3.8119 9.4032 26 1 3.2395 -3.6308 6.9885 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.6766 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 3.8623 2.3260 -0.0002 33 1 1.6767 -1.7488 -1.2493 34 1 3.1300 -0.7208 -1.2496 35 1 3.2284 1.2917 -2.6025 36 1 2.4035 2.4599 -4.6069 37 1 -1.0756 -0.0106 -4.6127 38 1 -0.2536 -1.1713 -2.6029 39 1 2.5761 -1.4793 1.1070 40 1 2.6995 -1.6546 3.4315 41 1 2.1569 0.6533 4.9666 42 1 0.7036 -0.3745 4.9659 43 1 2.0520 -2.2804 5.8027 44 1 3.5048 -1.2520 5.8031 45 1 2.5232 -1.4038 10.3989 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875481288.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:37 Heat of formation + Delta-G solvation = -95.731479 kcal Electronic energy + Delta-G solvation = -26970.179602 eV Core-core repulsion = 23012.109091 eV Total energy + Delta-G solvation = -3958.070512 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.58737 -40.41988 -38.53354 -37.37182 -36.62383 -36.05918 -34.79555 -33.67230 -32.06786 -31.98534 -30.61481 -27.85021 -26.97970 -26.64728 -23.68672 -23.38401 -22.55762 -21.83271 -20.57457 -19.41684 -18.85962 -18.20905 -17.92540 -17.33463 -16.64457 -16.55021 -16.36738 -16.15463 -15.98663 -15.52772 -15.20574 -14.91651 -14.65142 -14.57648 -14.41052 -14.35299 -14.28477 -13.78865 -13.32457 -13.15109 -13.08352 -12.94998 -12.67404 -12.52028 -12.34114 -12.15004 -12.12172 -12.08839 -11.78714 -11.74790 -11.72115 -11.49781 -11.20778 -10.77448 -10.62951 -10.21245 -9.94343 -9.68529 -9.49421 -8.28674 -6.35704 0.14004 0.35983 1.18567 1.40062 1.42663 1.53938 1.77446 2.26676 2.38046 2.65150 3.06391 3.29276 3.34655 3.80245 3.90279 3.91004 3.99430 4.01075 4.34835 4.37907 4.40291 4.44310 4.48401 4.55251 4.70026 4.75622 4.77909 4.79168 4.80136 4.93516 5.07453 5.10005 5.19796 5.27513 5.29958 5.34513 5.44188 5.50482 5.63556 5.66831 5.72090 5.86871 6.12052 6.25176 6.71656 6.84831 7.22795 7.28888 7.71215 8.88089 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.034752 B = 0.001850 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.523249 B =15132.470787 C =15145.975449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.206 3.794 3 C 0.065 3.935 4 O -0.572 6.572 5 C -0.072 4.072 6 C -0.074 4.074 7 C -0.101 4.101 8 C -0.118 4.118 9 C -0.049 4.049 10 Cl -0.080 7.080 11 C -0.117 4.117 12 C -0.101 4.101 13 N -0.720 5.720 14 C 0.702 3.298 15 O -0.630 6.630 16 N -0.735 5.735 17 C 0.168 3.832 18 C -0.012 4.012 19 C -0.538 4.538 20 H 0.028 0.972 21 C 0.003 3.997 22 N -0.951 5.951 23 Si 0.960 3.040 24 H -0.266 1.266 25 H -0.287 1.287 26 H -0.237 1.237 27 H 0.073 0.927 28 H 0.048 0.952 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.034 0.966 32 H 0.390 0.610 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.143 0.857 36 H 0.142 0.858 37 H 0.144 0.856 38 H 0.149 0.851 39 H 0.409 0.591 40 H 0.408 0.592 41 H 0.037 0.963 42 H 0.040 0.960 43 H 0.037 0.963 44 H 0.034 0.966 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.151 -1.150 -34.904 34.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.119 3.881 3 C -0.014 4.014 4 O -0.379 6.379 5 C -0.109 4.109 6 C -0.074 4.074 7 C -0.119 4.119 8 C -0.137 4.137 9 C -0.076 4.076 10 Cl -0.051 7.051 11 C -0.136 4.136 12 C -0.119 4.119 13 N -0.376 5.376 14 C 0.402 3.598 15 O -0.512 6.512 16 N -0.390 5.390 17 C 0.043 3.957 18 C -0.049 4.049 19 C -0.577 4.577 20 H 0.047 0.953 21 C -0.194 4.194 22 N -0.591 5.591 23 Si 0.782 3.218 24 H -0.191 1.191 25 H -0.213 1.213 26 H -0.159 1.159 27 H 0.092 0.908 28 H 0.067 0.933 29 H 0.097 0.903 30 H 0.081 0.919 31 H 0.053 0.947 32 H 0.238 0.762 33 H 0.118 0.882 34 H 0.112 0.888 35 H 0.161 0.839 36 H 0.159 0.841 37 H 0.162 0.838 38 H 0.167 0.833 39 H 0.246 0.754 40 H 0.243 0.757 41 H 0.056 0.944 42 H 0.058 0.942 43 H 0.055 0.945 44 H 0.052 0.948 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.383 -0.850 -34.749 34.761 hybrid contribution 0.596 0.073 0.587 0.840 sum 0.979 -0.777 -34.162 34.185 Atomic orbital electron populations 1.22242 0.93877 1.03224 1.02806 1.20100 0.93699 0.90632 0.83639 1.22588 0.81574 0.97070 1.00124 1.86364 1.19032 1.34885 1.97652 1.20713 1.02482 0.99203 0.88514 1.19811 0.94891 0.96518 0.96215 1.21272 1.00648 0.95137 0.94813 1.21235 0.94891 1.01009 0.96555 1.21136 0.96873 0.97868 0.91694 1.98373 1.88716 1.78484 1.39508 1.21252 1.00570 0.95221 0.96526 1.21297 0.95577 1.00202 0.94848 1.44917 1.56509 1.33348 1.02781 1.16102 0.79971 0.82530 0.81150 1.90822 1.44603 1.29267 1.86526 1.45158 1.56135 1.33117 1.04630 1.20804 0.98287 0.96921 0.79676 1.19639 0.96907 0.96196 0.92198 1.21258 1.32225 1.13002 0.91185 0.95336 1.26085 0.97554 1.01320 0.94404 1.70080 1.47385 1.42801 0.98804 0.85531 0.78858 0.78403 0.79023 1.19071 1.21280 1.15946 0.90785 0.93261 0.90342 0.91945 0.94723 0.76170 0.88231 0.88839 0.83920 0.84065 0.83813 0.83293 0.75441 0.75657 0.94405 0.94152 0.94496 0.94792 0.92366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.28 7.81 71.98 0.56 -2.72 16 2 C 0.21 3.85 0.61 3.60 0.00 3.85 16 3 C 0.07 1.37 5.14 71.98 0.37 1.74 16 4 O -0.57 -10.62 12.42 -148.98 -1.85 -12.47 16 5 C -0.07 -0.87 4.43 29.85 0.13 -0.74 16 6 C -0.07 -0.91 4.01 -19.86 -0.08 -0.99 16 7 C -0.10 -1.25 7.88 22.27 0.18 -1.08 16 8 C -0.12 -1.53 9.83 22.29 0.22 -1.31 16 9 C -0.05 -0.69 6.32 22.32 0.14 -0.55 16 10 Cl -0.08 -1.14 28.96 -2.72 -0.08 -1.22 16 11 C -0.12 -1.45 9.83 22.29 0.22 -1.23 16 12 C -0.10 -1.14 7.88 22.26 0.18 -0.97 16 13 N -0.72 -15.49 4.98 -438.02 -2.18 -17.67 16 14 C 0.70 22.18 7.98 179.05 1.43 23.61 16 15 O -0.63 -25.08 12.55 -3.99 -0.05 -25.13 16 16 N -0.74 -23.26 5.56 -478.53 -2.66 -25.92 16 17 C 0.17 6.93 5.61 86.38 0.48 7.42 16 18 C -0.01 -0.52 4.16 29.85 0.12 -0.39 16 19 C -0.54 -30.86 9.66 25.60 0.25 -30.62 16 20 H 0.03 1.83 7.99 -2.91 -0.02 1.81 16 21 C 0.00 0.19 5.47 84.65 0.46 0.66 16 22 N -0.95 -59.38 13.96 21.45 0.30 -59.08 16 23 Si 0.96 42.31 27.47 68.60 1.88 44.19 16 24 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 25 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 26 H -0.24 -9.23 6.54 99.48 0.65 -8.58 16 27 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.05 1.40 6.16 -2.39 -0.01 1.38 16 29 H 0.08 1.33 6.17 -2.39 -0.01 1.31 16 30 H 0.06 1.12 6.17 -2.39 -0.01 1.11 16 31 H 0.03 1.02 6.16 -2.39 -0.01 1.00 16 32 H 0.39 4.70 9.12 -74.06 -0.68 4.03 16 33 H 0.10 0.87 8.08 -2.39 -0.02 0.86 16 34 H 0.09 1.15 7.62 -2.39 -0.02 1.14 16 35 H 0.14 1.57 7.59 -2.91 -0.02 1.55 16 36 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 37 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16 38 H 0.15 1.16 8.03 -2.91 -0.02 1.14 16 39 H 0.41 6.34 8.49 -92.71 -0.79 5.56 16 40 H 0.41 10.07 8.49 -92.71 -0.79 9.29 16 41 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 42 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.04 1.55 7.20 -2.39 -0.02 1.53 16 44 H 0.03 1.41 7.57 -2.39 -0.02 1.40 16 45 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -75.00 376.97 -1.23 -76.23 By element: Atomic # 1 Polarization: 25.64 SS G_CDS: -1.26 Total: 24.38 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: 4.67 Total: -3.31 kcal Atomic # 7 Polarization: -98.13 SS G_CDS: -4.54 Total: -102.67 kcal Atomic # 8 Polarization: -35.70 SS G_CDS: -1.90 Total: -37.60 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 1.88 Total: 44.19 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -0.08 Total: -1.22 kcal Total: -75.00 -1.23 -76.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875481288.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.501 kcal (2) G-P(sol) polarization free energy of solvation -75.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds